Wall clock time and date at job start Mon Mar 30 2020 02:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50702 * 121.08769 * 2 1 4 4 C 1.53899 * 107.88489 * 134.54391 * 3 2 1 5 5 H 1.09001 * 112.39428 * 181.91260 * 4 3 2 6 6 C 1.54463 * 107.95871 * 305.97014 * 4 3 2 7 7 C 1.54237 * 104.97528 * 90.22746 * 6 4 3 8 8 C 1.54869 * 104.93266 * 359.80568 * 7 6 4 9 9 H 1.09005 * 112.09474 * 145.69600 * 8 7 6 10 10 C 1.51543 * 121.02500 * 180.29934 * 2 1 3 11 11 N 1.48193 * 107.42508 * 58.21453 * 4 3 2 12 12 C 1.36940 * 127.84227 * 105.17048 * 11 4 3 13 13 H 1.07991 * 119.99718 * 165.37663 * 12 11 4 14 14 C 1.38814 * 119.99772 * 345.37699 * 12 11 4 15 15 N 1.31617 * 120.00176 * 350.71901 * 14 12 11 16 16 Si 1.86801 * 119.99890 * 170.72321 * 14 12 11 17 17 H 1.48496 * 109.46784 * 269.99966 * 16 14 12 18 18 H 1.48501 * 109.46879 * 29.99448 * 16 14 12 19 19 H 1.48493 * 109.47149 * 149.99845 * 16 14 12 20 20 H 1.08003 * 120.00012 * 179.70904 * 1 2 3 21 21 H 1.07992 * 119.99884 * 359.70434 * 1 2 3 22 22 H 1.08993 * 109.61663 * 15.00543 * 3 2 1 23 23 H 1.09000 * 109.85727 * 254.21402 * 3 2 1 24 24 H 1.09004 * 110.33725 * 209.10007 * 6 4 3 25 25 H 1.08999 * 110.33971 * 331.24668 * 6 4 3 26 26 H 1.08999 * 110.34184 * 118.87466 * 7 6 4 27 27 H 1.09004 * 110.34044 * 241.02315 * 7 6 4 28 28 H 1.09001 * 109.80424 * 105.85662 * 10 2 1 29 29 H 1.08994 * 109.80752 * 344.97115 * 10 2 1 30 30 H 0.96997 * 120.00286 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0882 1.2906 0.0000 4 6 3.2121 1.1649 1.0439 5 1 3.8039 2.0762 1.1286 6 6 2.5691 0.7642 2.3900 7 6 2.5726 -0.7782 2.3899 8 6 3.2146 -1.1757 1.0378 9 1 3.8086 -2.0862 1.1179 10 6 2.0911 -1.2986 -0.0068 11 7 4.0411 -0.0035 0.6648 12 6 5.2859 -0.0007 0.0940 13 1 5.8771 -0.9043 0.0835 14 6 5.7876 1.1638 -0.4711 15 7 5.0054 2.2113 -0.6236 16 14 7.5728 1.2440 -1.0152 17 1 8.4125 1.7240 0.1116 18 1 8.0255 -0.1086 -1.4286 19 1 7.6995 2.1801 -2.1608 20 1 -0.5400 -0.9353 -0.0047 21 1 -0.5399 0.9352 0.0048 22 1 1.4279 2.1160 0.2658 23 1 2.5182 1.4636 -0.9865 24 1 3.1628 1.1444 3.2214 25 1 1.5486 1.1423 2.4498 26 1 3.1679 -1.1558 3.2212 27 1 1.5533 -1.1594 2.4508 28 1 2.5216 -1.4655 -0.9942 29 1 1.4328 -2.1269 0.2548 30 1 5.3561 3.0251 -1.0182 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595843102.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:40 Heat of formation + Delta-G solvation = 22.621741 kcal Electronic energy + Delta-G solvation = -12728.153127 eV Core-core repulsion = 10716.407641 eV Total energy + Delta-G solvation = -2011.745486 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.70646 -35.29431 -33.98982 -32.08027 -30.99263 -28.21207 -25.71888 -25.06529 -21.47177 -21.04042 -19.71213 -17.84976 -16.72129 -16.32678 -15.69898 -15.09545 -14.67801 -14.52222 -13.85717 -13.32368 -13.24741 -13.11705 -12.82722 -12.58513 -12.46998 -12.15697 -11.92021 -11.55310 -11.32857 -11.02095 -10.91676 -10.57570 -9.82158 -8.70187 -7.82567 -5.17125 1.46649 1.47296 1.55913 1.57749 2.51395 3.35172 3.64181 4.00412 4.12721 4.30977 4.38194 4.46270 4.57228 4.74812 4.86289 4.92359 5.04870 5.11680 5.18633 5.23643 5.28404 5.37495 5.51051 5.54672 5.67923 5.80019 5.97390 6.27379 6.31061 7.11779 7.78308 8.58288 9.28529 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.051424 B = 0.013518 C = 0.012912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.358170 B = 2070.863773 C = 2168.019943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.103 4.103 3 C -0.081 4.081 4 C 0.174 3.826 5 H 0.064 0.936 6 C -0.130 4.130 7 C -0.114 4.114 8 C 0.138 3.862 9 H 0.068 0.932 10 C -0.093 4.093 11 N -0.608 5.608 12 C -0.236 4.236 13 H 0.075 0.925 14 C -0.060 4.060 15 N -0.937 5.937 16 Si 0.971 3.029 17 H -0.288 1.288 18 H -0.272 1.272 19 H -0.297 1.297 20 H 0.112 0.888 21 H 0.098 0.902 22 H 0.053 0.947 23 H 0.039 0.961 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.042 0.958 29 H 0.085 0.915 30 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.940 -4.828 4.003 9.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.103 4.103 3 C -0.120 4.120 4 C 0.068 3.932 5 H 0.082 0.918 6 C -0.169 4.169 7 C -0.152 4.152 8 C 0.031 3.969 9 H 0.086 0.914 10 C -0.132 4.132 11 N -0.330 5.330 12 C -0.365 4.365 13 H 0.093 0.907 14 C -0.254 4.254 15 N -0.585 5.585 16 Si 0.801 3.199 17 H -0.216 1.216 18 H -0.197 1.197 19 H -0.224 1.224 20 H 0.130 0.870 21 H 0.116 0.884 22 H 0.071 0.929 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.739 -4.709 3.883 9.092 hybrid contribution 1.127 0.502 -0.696 1.417 sum -5.611 -4.207 3.186 7.703 Atomic orbital electron populations 1.23557 0.93946 1.02152 1.05318 1.21910 0.95213 0.95792 0.97398 1.21079 0.96772 0.93951 1.00168 1.21391 0.89548 0.91694 0.90606 0.91756 1.22568 1.00011 0.96711 0.97584 1.22495 1.00657 0.95348 0.96725 1.21911 0.90693 0.90923 0.93371 0.91382 1.21450 0.97613 0.94887 0.99250 1.45382 1.15268 1.01792 1.70528 1.19337 0.91009 0.96921 1.29208 0.90726 1.25567 1.01865 0.97061 1.00885 1.70078 1.34933 1.03704 1.49752 0.85183 0.80449 0.77335 0.76980 1.21568 1.19654 1.22370 0.87021 0.88397 0.92865 0.94198 0.93205 0.90940 0.91952 0.89959 0.93925 0.89640 0.94514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.48 14.00 67.77 0.95 -5.53 16 2 C -0.10 -3.86 4.09 -16.22 -0.07 -3.93 16 3 C -0.08 -3.62 5.45 30.15 0.16 -3.45 16 4 C 0.17 8.37 3.06 45.47 0.14 8.51 16 5 H 0.06 3.61 6.38 -2.39 -0.02 3.59 16 6 C -0.13 -4.96 6.08 31.51 0.19 -4.77 16 7 C -0.11 -3.90 6.11 31.65 0.19 -3.71 16 8 C 0.14 5.59 4.27 45.61 0.19 5.78 16 9 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 10 C -0.09 -3.46 5.62 30.42 0.17 -3.29 16 11 N -0.61 -30.89 2.79 -636.74 -1.78 -32.66 16 12 C -0.24 -13.19 10.36 84.03 0.87 -12.32 16 13 H 0.07 4.05 7.85 -2.91 -0.02 4.03 16 14 C -0.06 -3.39 5.42 84.86 0.46 -2.93 16 15 N -0.94 -55.53 10.23 21.65 0.22 -55.31 16 16 Si 0.97 45.99 29.56 68.60 2.03 48.02 16 17 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 18 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 20 H 0.11 2.84 7.97 -2.91 -0.02 2.81 16 21 H 0.10 2.79 7.96 -2.91 -0.02 2.76 16 22 H 0.05 2.18 7.94 -2.39 -0.02 2.16 16 23 H 0.04 2.13 7.69 -2.39 -0.02 2.11 16 24 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 25 H 0.07 2.47 7.71 -2.39 -0.02 2.45 16 26 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.08 2.39 7.73 -2.39 -0.02 2.37 16 28 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.09 2.55 7.96 -2.39 -0.02 2.53 16 30 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -61.69 238.42 4.83 -56.86 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 1.09 Total: 8.73 kcal Atomic # 6 Polarization: -28.89 SS G_CDS: 3.27 Total: -25.63 kcal Atomic # 7 Polarization: -86.42 SS G_CDS: -1.56 Total: -87.98 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -61.69 4.83 -56.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595843102.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.483 kcal (2) G-P(sol) polarization free energy of solvation -61.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds