Wall clock time and date at job start Mon Mar 30 2020 02:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34346 * 124.94847 * 2 1 4 4 C 1.37006 * 115.30986 * 179.73866 * 3 2 1 5 5 C 1.37779 * 114.26125 * 0.44001 * 4 3 2 6 6 C 1.40544 * 125.39247 * 179.85482 * 5 4 3 7 7 C 1.38755 * 120.00033 * 179.71728 * 6 5 4 8 8 C 1.38525 * 119.99836 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00553 * 359.97438 * 8 7 6 10 10 C 1.40515 * 120.00087 * 179.97438 * 8 7 6 11 11 N 1.30655 * 119.99769 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00179 * 179.72384 * 10 8 7 13 13 H 1.48501 * 109.47229 * 89.99620 * 12 10 8 14 14 H 1.48496 * 109.47201 * 209.99911 * 12 10 8 15 15 H 1.48507 * 109.47000 * 330.00012 * 12 10 8 16 16 S 1.75806 * 124.95462 * 179.97438 * 2 1 3 17 17 H 1.09003 * 109.47249 * 179.97438 * 1 2 3 18 18 H 1.09002 * 109.47330 * 299.99679 * 1 2 3 19 19 H 1.09004 * 109.47635 * 59.99852 * 1 2 3 20 20 H 1.07997 * 122.34254 * 359.97438 * 3 2 1 21 21 H 1.08003 * 122.86837 * 180.25474 * 4 3 2 22 22 H 1.08005 * 119.99900 * 359.71613 * 6 5 4 23 23 H 1.07997 * 120.00343 * 359.97438 * 7 6 5 24 24 H 0.97000 * 120.00267 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2765 1.1012 0.0000 4 6 3.6272 0.8718 0.0056 5 6 3.9751 -0.4613 0.0008 6 6 5.2892 -0.9597 0.0020 7 6 5.5118 -2.3293 0.0026 8 6 6.8071 -2.8204 0.0044 9 1 7.6437 -2.1374 0.0048 10 6 7.0325 -4.2074 0.0055 11 7 6.0205 -5.0337 0.0054 12 14 8.7791 -4.8697 0.0000 13 1 9.2471 -5.0432 1.3987 14 1 8.8095 -6.1799 -0.6982 15 1 9.6693 -3.9125 -0.7046 16 16 2.5142 -1.4409 0.0006 17 1 -0.3634 -1.0277 -0.0005 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 1.8596 2.0974 -0.0004 21 1 4.3570 1.6680 0.0103 22 1 6.1258 -0.2766 0.0025 23 1 4.6753 -3.0124 0.0025 24 1 6.1761 -5.9912 0.0066 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687678522.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:53 Heat of formation + Delta-G solvation = -6.341335 kcal Electronic energy + Delta-G solvation = -9284.513936 eV Core-core repulsion = 7480.713631 eV Total energy + Delta-G solvation = -1803.800305 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 194.046 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.26229 -36.75021 -34.26963 -31.79527 -28.91986 -25.62521 -23.55607 -21.60405 -19.89371 -18.79028 -17.42996 -16.52648 -16.03497 -14.89269 -14.53386 -14.39032 -13.74584 -13.62338 -13.31127 -12.94081 -12.86257 -12.56232 -12.17482 -11.94560 -11.87865 -11.66478 -11.18699 -10.58538 -9.18239 -9.18049 -8.83971 -6.40255 0.11310 1.13299 1.24559 1.33231 1.52459 1.54791 1.76100 2.06089 2.38980 3.17921 4.40022 4.59499 4.62174 4.71592 4.77353 4.88233 5.04474 5.17419 5.38781 5.44288 5.55272 5.80146 6.08896 6.11704 6.19413 6.57176 6.70593 7.82583 Molecular weight = 194.05amu Principal moments of inertia in cm(-1) A = 0.085903 B = 0.007995 C = 0.007343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 325.869636 B = 3501.388947 C = 3812.111839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.294 4.294 3 C -0.088 4.088 4 C -0.326 4.326 5 C -0.014 4.014 6 C -0.406 4.406 7 C 0.056 3.944 8 C -0.404 4.404 9 H 0.096 0.904 10 C 0.023 3.977 11 N -0.787 5.787 12 Si 1.010 2.990 13 H -0.251 1.251 14 H -0.255 1.255 15 H -0.250 1.250 16 S -0.004 6.004 17 H 0.057 0.943 18 H 0.075 0.925 19 H 0.075 0.925 20 H 0.142 0.858 21 H 0.117 0.883 22 H 0.090 0.910 23 H 0.080 0.920 24 H 0.313 0.687 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.209 -0.003 0.002 1.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.409 4.409 3 C -0.117 4.117 4 C -0.350 4.350 5 C -0.131 4.131 6 C -0.432 4.432 7 C 0.032 3.968 8 C -0.430 4.430 9 H 0.114 0.886 10 C -0.200 4.200 11 N -0.408 5.408 12 Si 0.827 3.173 13 H -0.175 1.175 14 H -0.179 1.179 15 H -0.174 1.174 16 S 0.256 5.744 17 H 0.077 0.923 18 H 0.093 0.907 19 H 0.093 0.907 20 H 0.160 0.840 21 H 0.135 0.865 22 H 0.108 0.892 23 H 0.098 0.902 24 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.696 -1.716 -0.005 2.413 hybrid contribution 0.901 1.254 0.006 1.544 sum -0.795 -0.462 0.001 0.919 Atomic orbital electron populations 1.20064 0.86626 1.02004 1.02564 1.24324 1.00033 0.93876 1.22673 1.19730 0.92487 0.98739 1.00709 1.20234 0.96409 0.94348 1.24025 1.22393 0.95977 0.95831 0.98867 1.19566 0.91915 0.94464 1.37283 1.20938 0.96594 0.93123 0.86127 1.20299 0.95106 0.93272 1.34294 0.88641 1.27707 1.05807 0.96785 0.89743 1.69547 1.36727 1.07112 1.27429 0.84765 0.73432 0.78547 0.80543 1.17545 1.17871 1.17354 1.83825 0.99086 1.12686 1.78823 0.92350 0.90663 0.90664 0.84020 0.86536 0.89183 0.90223 0.87492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.63 10.37 71.23 0.74 -0.89 14 2 C -0.29 -12.01 6.52 24.79 0.16 -11.85 14 3 C -0.09 -3.66 10.00 21.09 0.21 -3.45 14 4 C -0.33 -15.50 10.19 21.87 0.22 -15.28 14 5 C -0.01 -0.72 6.20 22.72 0.14 -0.58 14 6 C -0.41 -21.96 9.62 22.96 0.22 -21.74 14 7 C 0.06 3.04 8.91 22.46 0.20 3.24 14 8 C -0.40 -20.13 9.01 22.89 0.21 -19.93 14 9 H 0.10 4.50 7.85 -2.91 -0.02 4.48 14 10 C 0.02 1.03 5.50 85.42 0.47 1.50 14 11 N -0.79 -36.50 12.85 21.94 0.28 -36.22 14 12 Si 1.01 32.08 29.57 68.60 2.03 34.11 14 13 H -0.25 -7.64 7.11 99.48 0.71 -6.93 14 14 H -0.26 -7.48 7.11 99.48 0.71 -6.77 14 15 H -0.25 -7.80 7.11 99.48 0.71 -7.10 14 16 S 0.00 -0.20 21.97 -56.49 -1.24 -1.44 14 17 H 0.06 1.69 8.14 -2.39 -0.02 1.67 14 18 H 0.07 1.99 8.14 -2.39 -0.02 1.97 14 19 H 0.07 1.99 8.14 -2.38 -0.02 1.97 14 20 H 0.14 4.88 8.06 -2.91 -0.02 4.85 14 21 H 0.12 5.27 8.06 -2.91 -0.02 5.25 14 22 H 0.09 4.82 8.06 -2.91 -0.02 4.80 14 23 H 0.08 4.49 6.41 -2.91 -0.02 4.48 14 24 H 0.31 12.47 8.29 -92.71 -0.77 11.70 14 Total: -1.00 -56.99 233.17 4.82 -52.16 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 1.18 Total: 20.37 kcal Atomic # 6 Polarization: -71.56 SS G_CDS: 2.57 Total: -68.99 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.28 Total: -36.22 kcal Atomic # 14 Polarization: 32.08 SS G_CDS: 2.03 Total: 34.11 kcal Atomic # 16 Polarization: -0.20 SS G_CDS: -1.24 Total: -1.44 kcal Total: -56.99 4.82 -52.16 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687678522.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.823 kcal (2) G-P(sol) polarization free energy of solvation -56.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds