Wall clock time and date at job start Mon Mar 30 2020 02:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30686 * 1 3 3 Si 1.86798 * 120.00105 * 2 1 4 4 H 1.48500 * 109.47202 * 269.99628 * 3 2 1 5 5 H 1.48501 * 109.47089 * 29.99904 * 3 2 1 6 6 H 1.48498 * 109.47308 * 149.99695 * 3 2 1 7 7 C 1.40304 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00525 * 180.02562 * 7 2 1 9 9 C 1.40074 * 120.00033 * 0.02562 * 7 2 1 10 10 C 1.35029 * 120.00302 * 180.02562 * 9 7 2 11 11 C 1.50707 * 120.00168 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.47011 * 124.99809 * 11 10 9 13 13 C 1.33381 * 125.20534 * 90.00054 * 12 11 10 14 14 C 1.38427 * 114.92374 * 180.02562 * 13 12 11 15 15 C 1.33387 * 114.91991 * 0.25034 * 14 13 12 16 16 S 1.75886 * 109.59194 * 359.63459 * 15 14 13 17 17 H 0.96997 * 119.99760 * 0.02562 * 1 2 3 18 18 H 1.08002 * 119.99762 * 359.97438 * 9 7 2 19 19 H 1.07996 * 120.00317 * 359.97438 * 10 9 7 20 20 H 1.09000 * 109.46910 * 4.99975 * 11 10 9 21 21 H 1.08995 * 109.47242 * 245.00021 * 11 10 9 22 22 H 1.08001 * 122.53741 * 0.05729 * 13 12 11 23 23 H 1.08002 * 122.53759 * 179.97438 * 14 13 12 24 24 H 1.08002 * 125.20431 * 179.75072 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.4885 2.0463 -1.4001 5 1 1.4383 2.6527 0.7000 6 1 3.5384 1.4402 0.7001 7 6 2.0084 -1.2150 0.0005 8 1 3.0884 -1.2151 0.0010 9 6 1.3081 -2.4282 0.0005 10 6 1.9832 -3.5975 0.0016 11 6 1.2297 -4.9027 0.0022 12 6 1.6848 -5.7460 -1.1610 13 6 2.6899 -6.6222 -1.1288 14 6 2.9263 -7.2828 -2.3221 15 6 2.1165 -6.9392 -3.3248 16 16 0.9722 -5.7246 -2.7689 17 1 -0.4849 0.8400 -0.0004 18 1 0.2281 -2.4282 0.0005 19 1 3.0632 -3.5976 0.0020 20 1 0.1615 -4.7055 -0.0879 21 1 1.4238 -5.4339 0.9339 22 1 3.2747 -6.8030 -0.2390 23 1 3.7101 -8.0174 -2.4340 24 1 2.1560 -7.3461 -4.3244 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687678523.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:07 Heat of formation + Delta-G solvation = 7.133462 kcal Electronic energy + Delta-G solvation = -9266.158059 eV Core-core repulsion = 7462.942065 eV Total energy + Delta-G solvation = -1803.215994 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 194.046 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.72307 -36.41838 -34.45744 -31.47515 -28.25774 -25.70244 -23.67621 -20.66061 -19.82091 -19.08052 -17.75074 -16.73668 -16.23325 -15.16238 -14.72270 -14.15517 -13.76068 -13.54506 -13.28672 -13.06156 -12.86379 -12.40828 -12.18219 -11.67616 -11.58611 -11.51359 -11.42142 -9.77474 -9.39926 -9.32161 -8.72692 -6.36487 0.23678 0.84498 1.22999 1.26244 1.35456 1.50394 1.89108 2.01960 2.19926 3.33570 4.21153 4.31682 4.43220 4.77568 4.80140 4.93657 5.04975 5.19801 5.23889 5.33104 5.52560 5.71790 5.91787 6.30853 6.58322 6.96565 7.16117 8.32644 Molecular weight = 194.05amu Principal moments of inertia in cm(-1) A = 0.065293 B = 0.007437 C = 0.007354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.730911 B = 3764.090023 C = 3806.328840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.027 3.973 3 Si 0.990 3.010 4 H -0.260 1.260 5 H -0.261 1.261 6 H -0.259 1.259 7 C -0.499 4.499 8 H 0.064 0.936 9 C 0.032 3.968 10 C -0.407 4.407 11 C 0.025 3.975 12 C -0.155 4.155 13 C -0.169 4.169 14 C -0.132 4.132 15 C -0.224 4.224 16 S 0.050 5.950 17 H 0.292 0.708 18 H 0.061 0.939 19 H 0.064 0.936 20 H 0.046 0.954 21 H 0.068 0.932 22 H 0.145 0.855 23 H 0.167 0.833 24 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.856 -8.035 -4.313 9.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.186 4.186 3 Si 0.810 3.190 4 H -0.185 1.185 5 H -0.185 1.185 6 H -0.183 1.183 7 C -0.529 4.529 8 H 0.082 0.918 9 C 0.012 3.988 10 C -0.430 4.430 11 C -0.014 4.014 12 C -0.272 4.272 13 C -0.199 4.199 14 C -0.162 4.162 15 C -0.359 4.359 16 S 0.312 5.688 17 H 0.102 0.898 18 H 0.079 0.921 19 H 0.082 0.918 20 H 0.065 0.935 21 H 0.086 0.914 22 H 0.162 0.838 23 H 0.184 0.816 24 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 1.445 -7.119 -4.998 8.818 hybrid contribution 1.254 0.033 0.707 1.440 sum 2.699 -7.086 -4.292 8.713 Atomic orbital electron populations 1.69609 1.09178 1.31224 1.37985 1.27065 0.95744 1.05320 0.90499 0.85089 0.78873 0.75330 0.79691 1.18461 1.18550 1.18305 1.19799 0.94592 0.92143 1.46413 0.91802 1.19971 0.95725 0.93141 0.89985 1.21976 0.95876 0.92045 1.33070 1.18584 0.97197 0.92909 0.92679 1.24941 1.01883 1.01731 0.98688 1.20360 0.99355 0.99360 1.00784 1.20404 1.01776 1.02379 0.91648 1.25847 1.01772 1.03551 1.04715 1.84369 1.36856 1.41456 1.06100 0.89761 0.92105 0.91792 0.93529 0.91354 0.83783 0.81561 0.79310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.71 12.86 21.89 0.28 -46.43 14 2 C 0.03 1.44 5.50 85.37 0.47 1.91 14 3 Si 0.99 39.85 29.56 68.60 2.03 41.88 14 4 H -0.26 -10.04 7.11 99.48 0.71 -9.34 14 5 H -0.26 -9.77 7.11 99.48 0.71 -9.06 14 6 H -0.26 -10.23 7.11 99.48 0.71 -9.53 14 7 C -0.50 -28.80 9.05 23.22 0.21 -28.59 14 8 H 0.06 3.63 7.85 -2.91 -0.02 3.60 14 9 C 0.03 1.84 9.00 21.98 0.20 2.04 14 10 C -0.41 -21.25 9.26 24.95 0.23 -21.02 14 11 C 0.03 1.10 6.17 29.10 0.18 1.28 14 12 C -0.16 -6.03 5.75 24.59 0.14 -5.89 14 13 C -0.17 -5.64 10.05 21.22 0.21 -5.42 14 14 C -0.13 -3.63 10.18 21.22 0.22 -3.42 14 15 C -0.22 -6.18 11.23 66.72 0.75 -5.43 14 16 S 0.05 1.76 23.33 -56.49 -1.32 0.44 14 17 H 0.29 14.28 8.29 -92.71 -0.77 13.51 14 18 H 0.06 3.66 7.27 -2.91 -0.02 3.64 14 19 H 0.06 3.44 8.05 -2.91 -0.02 3.42 14 20 H 0.05 2.06 7.84 -2.39 -0.02 2.04 14 21 H 0.07 2.72 8.14 -2.39 -0.02 2.70 14 22 H 0.14 4.36 8.06 -2.91 -0.02 4.33 14 23 H 0.17 3.35 8.06 -2.91 -0.02 3.33 14 24 H 0.19 3.82 8.06 -2.91 -0.02 3.79 14 Total: -1.00 -61.00 234.88 4.78 -56.22 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 1.18 Total: 12.44 kcal Atomic # 6 Polarization: -67.16 SS G_CDS: 2.61 Total: -64.55 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.28 Total: -46.43 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -1.32 Total: 0.44 kcal Total: -61.00 4.78 -56.22 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687678523.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.354 kcal (2) G-P(sol) polarization free energy of solvation -60.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds