Wall clock time and date at job start Mon Mar 30 2020 02:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 N 1.30614 * 125.54710 * 193.91995 * 3 2 1 5 5 C 1.30906 * 115.83834 * 179.97438 * 4 3 2 6 6 C 1.50701 * 122.09845 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.47191 * 305.02569 * 6 5 4 8 8 H 1.07995 * 119.99831 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99950 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00219 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99857 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46937 * 89.99983 * 11 9 7 13 13 H 1.48500 * 109.46929 * 209.99976 * 11 9 7 14 14 H 1.48502 * 109.47144 * 330.00056 * 11 9 7 15 15 C 1.34016 * 115.80281 * 0.02562 * 5 4 3 16 16 S 1.71064 * 109.14125 * 359.97438 * 15 5 4 17 17 H 1.08992 * 109.47180 * 65.02695 * 6 5 4 18 18 H 1.09003 * 109.46823 * 185.02805 * 6 5 4 19 19 H 0.96995 * 120.00476 * 179.97438 * 10 9 7 20 20 H 1.08004 * 125.43549 * 180.02562 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3269 1.0325 0.2557 5 6 4.6173 0.8187 0.2031 6 6 5.6214 1.9096 0.4728 7 6 5.3482 3.0798 -0.4366 8 1 4.5292 3.0380 -1.1392 9 6 6.1440 4.2039 -0.3715 10 7 7.1417 4.2547 0.4838 11 14 5.8058 5.6542 -1.4992 12 1 4.8613 6.5879 -0.8350 13 1 7.0785 6.3617 -1.7908 14 1 5.2089 5.1658 -2.7682 15 6 4.9893 -0.4310 -0.1068 16 16 3.5925 -1.3895 -0.3443 17 1 5.5398 2.2297 1.5114 18 1 6.6269 1.5319 0.2869 19 1 7.7018 5.0453 0.5294 20 1 6.0086 -0.7779 -0.1921 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694844172.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:31 Heat of formation + Delta-G solvation = 69.974144 kcal Electronic energy + Delta-G solvation = -9167.472118 eV Core-core repulsion = 7263.440757 eV Total energy + Delta-G solvation = -1904.031361 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 194.021 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.52838 -36.48735 -33.25435 -31.06891 -27.92881 -25.92053 -23.39981 -19.60876 -18.86136 -16.96772 -16.13339 -14.71147 -14.66481 -14.13641 -13.38905 -13.01394 -12.91956 -12.40218 -12.02672 -11.70239 -11.31677 -10.76135 -10.61746 -9.84113 -9.56038 -9.41326 -9.33796 -8.51130 -8.15114 -6.08713 -4.10364 0.51632 1.17398 1.92883 2.74951 2.76832 3.31338 3.37305 3.41336 3.61948 3.83295 4.43403 5.21114 5.31817 5.62223 5.82764 6.68719 7.28229 7.35495 7.41903 7.86992 8.07383 8.28372 8.92625 9.53080 11.02178 Molecular weight = 194.02amu Principal moments of inertia in cm(-1) A = 0.047341 B = 0.009891 C = 0.008653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.308344 B = 2830.169715 C = 3234.994455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C 0.304 3.696 3 C 0.070 3.930 4 N -0.380 5.380 5 C 0.106 3.894 6 C 0.081 3.919 7 C -0.508 4.508 8 H 0.060 0.940 9 C 0.058 3.942 10 N -0.896 5.896 11 Si 0.897 3.103 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.274 1.274 15 C -0.266 4.266 16 S 0.170 5.830 17 H 0.044 0.956 18 H 0.042 0.958 19 H 0.263 0.737 20 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.034 -10.402 -1.383 10.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.071 5.071 2 C -0.014 4.014 3 C -0.204 4.204 4 N -0.097 5.097 5 C -0.030 4.030 6 C 0.041 3.959 7 C -0.546 4.546 8 H 0.078 0.922 9 C -0.143 4.143 10 N -0.535 5.535 11 Si 0.725 3.275 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.407 4.407 16 S 0.423 5.577 17 H 0.062 0.938 18 H 0.060 0.940 19 H 0.072 0.928 20 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -5.042 -10.843 -1.461 12.047 hybrid contribution 1.052 1.591 -0.426 1.954 sum -3.990 -9.252 -1.887 10.251 Atomic orbital electron populations 1.81240 1.10604 1.06640 1.08569 1.23754 0.90033 0.93982 0.93660 1.22226 0.91134 0.93999 1.13026 1.66866 1.04960 1.26982 1.10937 1.21217 0.89874 0.95241 0.96642 1.18125 0.89972 0.89158 0.98606 1.20996 1.14396 0.99275 1.19963 0.92163 1.24968 0.95001 0.98553 0.95772 1.69931 1.18145 1.29408 1.36055 0.86498 0.77579 0.82401 0.81007 1.20529 1.21182 1.19859 1.26600 1.04478 0.97711 1.11910 1.83442 0.97163 1.13453 1.63685 0.93837 0.94028 0.92762 0.79807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -6.59 18.54 41.83 0.78 -5.82 14 2 C 0.30 4.96 15.97 -22.47 -0.36 4.60 14 3 C 0.07 1.17 7.32 -16.14 -0.12 1.06 14 4 N -0.38 -7.81 10.45 -8.82 -0.09 -7.90 14 5 C 0.11 2.15 5.98 -84.47 -0.50 1.64 14 6 C 0.08 1.97 5.45 -29.03 -0.16 1.81 14 7 C -0.51 -13.91 8.97 -34.44 -0.31 -14.22 14 8 H 0.06 1.67 7.72 -52.49 -0.41 1.27 14 9 C 0.06 1.62 5.46 -17.82 -0.10 1.53 14 10 N -0.90 -25.74 13.29 55.43 0.74 -25.01 14 11 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 14 12 H -0.28 -6.68 7.11 56.52 0.40 -6.27 14 13 H -0.29 -6.72 7.11 56.52 0.40 -6.31 14 14 H -0.27 -6.47 7.11 56.52 0.40 -6.07 14 15 C -0.27 -4.20 10.75 29.25 0.31 -3.88 14 16 S 0.17 2.21 23.19 -107.50 -2.49 -0.28 14 17 H 0.04 1.13 8.14 -51.93 -0.42 0.71 14 18 H 0.04 1.01 8.01 -51.93 -0.42 0.59 14 19 H 0.26 7.15 8.31 -40.82 -0.34 6.81 14 20 H 0.18 2.42 8.06 -52.48 -0.42 2.00 14 LS Contribution 216.44 15.07 3.26 3.26 Total: -1.00 -29.17 216.44 -4.87 -34.04 By element: Atomic # 1 Polarization: -6.48 SS G_CDS: -0.80 Total: -7.28 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -1.23 Total: -7.46 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 1.42 Total: -38.72 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.49 Total: -0.28 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -29.17 -4.87 -34.04 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694844172.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.012 kcal (2) G-P(sol) polarization free energy of solvation -29.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds