Wall clock time and date at job start Mon Mar 30 2020 02:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99982 * 2 1 4 4 H 1.48497 * 109.47017 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46796 * 299.99953 * 3 2 1 6 6 H 1.48503 * 109.47162 * 59.99654 * 3 2 1 7 7 C 1.37880 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99750 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99920 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47549 * 179.97438 * 9 7 2 11 11 C 1.46898 * 111.00595 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.63422 * 32.13388 * 11 10 9 13 13 C 1.54837 * 110.58078 * 269.26600 * 11 10 9 14 14 C 1.56200 * 103.68394 * 241.44809 * 13 11 10 15 15 H 1.08988 * 116.28848 * 163.13719 * 14 13 11 16 16 C 1.53362 * 103.87308 * 293.28459 * 14 13 11 17 17 C 1.31790 * 108.42891 * 70.43988 * 16 14 13 18 18 C 1.53362 * 108.42186 * 359.60330 * 17 16 14 19 19 H 1.09005 * 116.33003 * 159.99503 * 18 17 16 20 20 C 1.57250 * 99.79937 * 33.60304 * 18 17 16 21 21 H 0.96993 * 119.99705 * 0.02562 * 1 2 3 22 22 H 1.09009 * 109.47299 * 59.99703 * 9 7 2 23 23 H 1.09000 * 109.47520 * 299.99997 * 9 7 2 24 24 H 1.00907 * 110.99711 * 303.95994 * 10 9 7 25 25 H 1.09000 * 110.57852 * 122.90137 * 13 11 10 26 26 H 1.09001 * 110.71033 * 0.06232 * 13 11 10 27 27 H 1.07998 * 125.78315 * 250.30947 * 16 14 13 28 28 H 1.08002 * 125.79147 * 179.87332 * 17 16 14 29 29 H 1.09003 * 112.52673 * 66.63133 * 20 18 17 30 30 H 1.09005 * 112.52620 * 194.49705 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5054 -4.9071 -0.0001 12 1 0.5631 -4.8328 -0.5430 13 6 1.2617 -5.3948 1.4491 14 6 2.0489 -6.7420 1.5229 15 1 2.2571 -7.1253 2.5216 16 6 1.2865 -7.6662 0.5656 17 6 1.4985 -7.2545 -0.6683 18 6 2.4088 -6.0213 -0.6180 19 1 2.9388 -5.7738 -1.5378 20 6 3.2938 -6.3926 0.6277 21 1 -0.4849 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5568 0.8903 24 1 2.8406 -3.5486 -0.7808 25 1 0.1988 -5.5621 1.6235 26 1 1.6590 -4.6789 2.1687 27 1 0.6804 -8.5125 0.8536 28 1 1.0956 -7.7060 -1.5628 29 1 3.9317 -7.2571 0.4441 30 1 3.8563 -5.5404 1.0092 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698795980.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:21 Heat of formation + Delta-G solvation = 29.030841 kcal Electronic energy + Delta-G solvation = -11914.789023 eV Core-core repulsion = 9903.321456 eV Total energy + Delta-G solvation = -2011.467567 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.24169 -34.61091 -32.26471 -29.47744 -28.23925 -27.19119 -25.30546 -21.82563 -20.13911 -19.76874 -17.70917 -16.42861 -16.07136 -15.10245 -14.56171 -14.35850 -12.98448 -12.53772 -12.22362 -12.09699 -11.54247 -11.21645 -11.01081 -10.99547 -10.83641 -10.70035 -10.59897 -10.28758 -10.08138 -9.72585 -9.11105 -8.69588 -8.45995 -7.24166 -6.01357 -4.03225 2.42964 3.31961 3.39070 3.44334 4.44536 4.79322 4.87202 4.96378 5.16705 5.34526 5.45883 5.61066 5.68770 5.75056 5.82080 5.96763 6.21842 6.33403 6.38689 6.47968 6.55449 6.56278 6.76401 7.16813 7.32733 7.45978 7.82439 8.16929 8.44710 8.66423 9.06984 9.61736 11.09812 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.079353 B = 0.007775 C = 0.007615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.770514 B = 3600.482324 C = 3676.305399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.680 5.680 11 C 0.088 3.912 12 H 0.039 0.961 13 C -0.107 4.107 14 C -0.080 4.080 15 H 0.094 0.906 16 C -0.168 4.168 17 C -0.169 4.169 18 C -0.082 4.082 19 H 0.095 0.905 20 C -0.112 4.112 21 H 0.260 0.740 22 H -0.015 1.015 23 H 0.027 0.973 24 H 0.328 0.672 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.062 0.938 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.515 -12.608 0.322 13.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.311 5.311 11 C -0.023 4.023 12 H 0.057 0.943 13 C -0.145 4.145 14 C -0.099 4.099 15 H 0.112 0.888 16 C -0.186 4.186 17 C -0.187 4.187 18 C -0.101 4.101 19 H 0.113 0.887 20 C -0.149 4.149 21 H 0.070 0.930 22 H 0.002 0.998 23 H 0.045 0.955 24 H 0.145 0.855 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.081 0.919 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.429 -12.443 1.012 12.946 hybrid contribution -0.225 0.871 -0.988 1.336 sum 3.205 -11.571 0.025 12.007 Atomic orbital electron populations 1.69980 1.06090 1.26621 1.51090 1.25005 0.94874 0.99382 0.95412 0.86434 0.80066 0.83380 0.77482 1.19654 1.21117 1.21012 1.21245 0.93549 0.90279 1.50063 0.91910 1.19592 0.90617 0.87401 0.95659 1.60738 1.20906 1.00813 1.48630 1.22641 0.95096 0.89663 0.94854 0.94268 1.22741 0.98700 0.95221 0.97840 1.22916 0.95049 0.94699 0.97206 0.88766 1.24079 1.00654 0.98598 0.95296 1.24057 1.00406 0.96939 0.97285 1.23102 0.95401 0.93750 0.97847 0.88729 1.23987 0.96179 1.00521 0.94258 0.93007 0.99751 0.95465 0.85475 0.92618 0.90061 0.86204 0.86167 0.91893 0.89610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.92 29.54 -169.99 -5.02 16.89 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.51 -14.74 9.32 -34.44 -0.32 -15.07 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.19 5.20 5.31 -4.98 -0.03 5.17 16 10 N -0.68 -14.82 6.19 -105.17 -0.65 -15.47 16 11 C 0.09 1.64 2.62 -65.03 -0.17 1.47 16 12 H 0.04 0.80 7.77 -51.93 -0.40 0.40 16 13 C -0.11 -1.83 6.04 -24.05 -0.15 -1.98 16 14 C -0.08 -1.13 5.26 -86.40 -0.45 -1.58 16 15 H 0.09 1.16 8.14 -51.94 -0.42 0.74 16 16 C -0.17 -2.22 10.13 -34.86 -0.35 -2.57 16 17 C -0.17 -2.31 10.14 -34.86 -0.35 -2.66 16 18 C -0.08 -1.25 4.64 -86.41 -0.40 -1.65 16 19 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 20 C -0.11 -1.59 6.65 -22.11 -0.15 -1.74 16 21 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 22 H -0.02 -0.44 8.08 -51.92 -0.42 -0.86 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.33 6.83 8.41 -39.29 -0.33 6.50 16 25 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 26 H 0.08 1.53 7.98 -51.93 -0.41 1.12 16 27 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 28 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 1.32 8.09 -51.93 -0.42 0.90 16 LS Contribution 249.13 15.07 3.75 3.75 Total: -1.00 -29.97 249.13 -8.14 -38.11 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -4.49 Total: 2.36 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: -2.47 Total: -19.13 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.09 Total: -41.99 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -29.97 -8.14 -38.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698795980.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.141 kcal (2) G-P(sol) polarization free energy of solvation -29.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds