Wall clock time and date at job start Mon Mar 30 2020 02:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99982 * 2 1 4 4 H 1.48497 * 109.47017 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46796 * 299.99953 * 3 2 1 6 6 H 1.48503 * 109.47162 * 59.99654 * 3 2 1 7 7 C 1.37880 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99750 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99920 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47549 * 179.97438 * 9 7 2 11 11 C 1.46898 * 111.00595 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.63422 * 32.13388 * 11 10 9 13 13 C 1.54837 * 110.58078 * 269.26600 * 11 10 9 14 14 C 1.56200 * 103.68394 * 241.44809 * 13 11 10 15 15 H 1.08988 * 116.28848 * 163.13719 * 14 13 11 16 16 C 1.53362 * 103.87308 * 293.28459 * 14 13 11 17 17 C 1.31790 * 108.42891 * 70.43988 * 16 14 13 18 18 C 1.53362 * 108.42186 * 359.60330 * 17 16 14 19 19 H 1.09005 * 116.33003 * 159.99503 * 18 17 16 20 20 C 1.57250 * 99.79937 * 33.60304 * 18 17 16 21 21 H 0.96993 * 119.99705 * 0.02562 * 1 2 3 22 22 H 1.09009 * 109.47299 * 59.99703 * 9 7 2 23 23 H 1.09000 * 109.47520 * 299.99997 * 9 7 2 24 24 H 1.00907 * 110.99711 * 303.95994 * 10 9 7 25 25 H 1.09000 * 110.57852 * 122.90137 * 13 11 10 26 26 H 1.09001 * 110.71033 * 0.06232 * 13 11 10 27 27 H 1.07998 * 125.78315 * 250.30947 * 16 14 13 28 28 H 1.08002 * 125.79147 * 179.87332 * 17 16 14 29 29 H 1.09003 * 112.52673 * 66.63133 * 20 18 17 30 30 H 1.09005 * 112.52620 * 194.49705 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5054 -4.9071 -0.0001 12 1 0.5631 -4.8328 -0.5430 13 6 1.2617 -5.3948 1.4491 14 6 2.0489 -6.7420 1.5229 15 1 2.2571 -7.1253 2.5216 16 6 1.2865 -7.6662 0.5656 17 6 1.4985 -7.2545 -0.6683 18 6 2.4088 -6.0213 -0.6180 19 1 2.9388 -5.7738 -1.5378 20 6 3.2938 -6.3926 0.6277 21 1 -0.4849 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5568 0.8903 24 1 2.8406 -3.5486 -0.7808 25 1 0.1988 -5.5621 1.6235 26 1 1.6590 -4.6789 2.1687 27 1 0.6804 -8.5125 0.8536 28 1 1.0956 -7.7060 -1.5628 29 1 3.9317 -7.2571 0.4441 30 1 3.8563 -5.5404 1.0092 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698795980.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:21 Heat of formation + Delta-G solvation = 9.838482 kcal Electronic energy + Delta-G solvation = -11915.621267 eV Core-core repulsion = 9903.321456 eV Total energy + Delta-G solvation = -2012.299810 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.49113 -36.49897 -34.34532 -30.84686 -29.70695 -28.60084 -27.11078 -23.87487 -21.44756 -21.14045 -18.97297 -18.41057 -17.30208 -16.81867 -16.34207 -16.05013 -14.75704 -14.43970 -13.75026 -13.51268 -13.38541 -12.80587 -12.72406 -12.39095 -12.20213 -12.16205 -12.13920 -11.98876 -11.52767 -11.35721 -11.10122 -10.69101 -9.83039 -9.10963 -8.24344 -6.36263 1.35949 1.40163 1.41116 1.55323 2.38937 3.08705 3.45660 3.65777 3.69277 3.88415 4.18544 4.36835 4.40157 4.50656 4.59145 4.74146 4.96727 4.97281 5.08791 5.16200 5.17918 5.24500 5.30325 5.38381 5.52656 5.62616 6.01670 6.11302 6.44806 6.72858 6.88875 7.35195 8.87684 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.079353 B = 0.007775 C = 0.007615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.770514 B = 3600.482324 C = 3676.305399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.977 3.023 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.535 4.535 8 H 0.066 0.934 9 C 0.211 3.789 10 N -0.674 5.674 11 C 0.079 3.921 12 H 0.015 0.985 13 C -0.109 4.109 14 C -0.073 4.073 15 H 0.117 0.883 16 C -0.160 4.160 17 C -0.177 4.177 18 C -0.081 4.081 19 H 0.102 0.898 20 C -0.108 4.108 21 H 0.265 0.735 22 H -0.045 1.045 23 H -0.004 1.004 24 H 0.334 0.666 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.147 0.853 28 H 0.139 0.861 29 H 0.088 0.912 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.758 -13.512 0.349 14.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.573 4.573 8 H 0.084 0.916 9 C 0.084 3.916 10 N -0.305 5.305 11 C -0.031 4.031 12 H 0.033 0.967 13 C -0.148 4.148 14 C -0.091 4.091 15 H 0.136 0.864 16 C -0.178 4.178 17 C -0.195 4.195 18 C -0.100 4.100 19 H 0.120 0.880 20 C -0.145 4.145 21 H 0.074 0.926 22 H -0.028 1.028 23 H 0.014 0.986 24 H 0.152 0.848 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.164 0.836 28 H 0.157 0.843 29 H 0.106 0.894 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.684 -13.373 1.039 14.208 hybrid contribution -0.657 1.120 -0.986 1.630 sum 4.027 -12.253 0.052 12.898 Atomic orbital electron populations 1.70113 1.07931 1.27980 1.51584 1.26018 0.95817 1.03591 0.94511 0.85229 0.78929 0.78006 0.77783 1.18500 1.20212 1.20344 1.21590 0.93870 0.91345 1.50531 0.91560 1.19202 0.90609 0.89135 0.92698 1.60631 1.20005 1.01000 1.48845 1.22778 0.94761 0.89331 0.96258 0.96686 1.22698 0.99081 0.96927 0.96075 1.22977 0.94429 0.92925 0.98802 0.86449 1.24295 1.00135 0.98809 0.94574 1.24173 1.00519 0.96305 0.98510 1.23108 0.95452 0.92923 0.98508 0.87983 1.23965 0.96220 1.00874 0.93438 0.92606 1.02784 0.98600 0.84839 0.92905 0.92326 0.83550 0.84283 0.89392 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.94 13.29 21.45 0.28 -57.66 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 3 Si 0.98 45.00 29.54 68.60 2.03 47.02 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.54 -31.39 9.32 25.60 0.24 -31.15 16 8 H 0.07 3.76 7.81 -2.91 -0.02 3.73 16 9 C 0.21 11.86 5.31 85.56 0.45 12.31 16 10 N -0.67 -30.27 6.19 -486.65 -3.01 -33.28 16 11 C 0.08 3.00 2.62 46.65 0.12 3.12 16 12 H 0.02 0.64 7.77 -2.39 -0.02 0.62 16 13 C -0.11 -3.79 6.04 32.33 0.20 -3.59 16 14 C -0.07 -1.90 5.26 -8.06 -0.04 -1.94 16 15 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 16 C -0.16 -3.74 10.13 25.79 0.26 -3.48 16 17 C -0.18 -4.41 10.14 25.79 0.26 -4.15 16 18 C -0.08 -2.37 4.64 -8.07 -0.04 -2.40 16 19 H 0.10 2.80 8.14 -2.38 -0.02 2.78 16 20 C -0.11 -2.83 6.65 33.59 0.22 -2.61 16 21 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 22 H -0.05 -2.76 8.08 -2.38 -0.02 -2.78 16 23 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 24 H 0.33 14.16 8.41 -89.69 -0.75 13.40 16 25 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 26 H 0.06 2.27 7.98 -2.39 -0.02 2.25 16 27 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 28 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 29 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.07 2.07 8.09 -2.38 -0.02 2.05 16 Total: -1.00 -65.28 249.13 1.79 -63.49 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.35 Total: 13.94 kcal Atomic # 6 Polarization: -35.65 SS G_CDS: 2.14 Total: -33.51 kcal Atomic # 7 Polarization: -88.21 SS G_CDS: -2.73 Total: -90.94 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -65.28 1.79 -63.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698795980.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.329 kcal (2) G-P(sol) polarization free energy of solvation -65.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds