Wall clock time and date at job start Mon Mar 30 2020 01:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32162 * 119.99902 * 2 1 4 4 C 1.32113 * 119.99904 * 180.27223 * 3 2 1 5 5 C 1.38394 * 120.00027 * 359.73563 * 4 3 2 6 6 N 1.32123 * 119.99410 * 359.97438 * 5 4 3 7 7 C 1.32153 * 120.00062 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99754 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.46949 * 90.00091 * 8 7 6 10 10 C 1.36931 * 120.00400 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99768 * 0.02562 * 10 9 8 12 12 C 1.38815 * 120.00410 * 179.97438 * 10 9 8 13 13 N 1.31614 * 119.99694 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99814 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47619 * 60.00366 * 14 12 10 16 16 H 1.48509 * 109.46896 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47210 * 299.99974 * 14 12 10 18 18 H 1.08992 * 109.47411 * 270.24775 * 1 2 3 19 19 H 1.09006 * 109.46935 * 30.24756 * 1 2 3 20 20 H 1.09000 * 109.47132 * 150.24306 * 1 2 3 21 21 H 1.08001 * 120.00474 * 179.71616 * 4 3 2 22 22 H 1.08003 * 120.00226 * 179.97438 * 5 4 3 23 23 H 1.09000 * 109.47318 * 209.99478 * 8 7 6 24 24 H 1.09000 * 109.47161 * 330.00108 * 8 7 6 25 25 H 0.97010 * 119.99909 * 359.97438 * 9 8 7 26 26 H 0.97001 * 119.99453 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1446 0.0000 4 6 3.4889 1.1446 -0.0054 5 6 4.1809 -0.0539 -0.0056 6 7 3.5202 -1.1981 0.0002 7 6 2.1987 -1.1980 0.0056 8 6 1.4451 -2.5031 0.0117 9 7 1.2066 -2.9229 1.3948 10 6 0.5341 -4.0879 1.6505 11 1 0.1797 -4.6976 0.8325 12 6 0.3086 -4.4859 2.9612 13 7 0.7408 -3.7432 3.9580 14 14 -0.6084 -6.0756 3.3098 15 1 0.1315 -7.2154 2.7111 16 1 -0.7177 -6.2722 4.7778 17 1 -1.9684 -6.0026 2.7180 18 1 -0.3634 0.0044 1.0276 19 1 -0.3633 0.8878 -0.5177 20 1 -0.3633 -0.8922 -0.5101 21 1 4.0290 2.0798 -0.0101 22 1 5.2609 -0.0540 -0.0105 23 1 0.4906 -2.3739 -0.4985 24 1 2.0321 -3.2639 -0.5029 25 1 1.5252 -2.3755 2.1296 26 1 0.5829 -4.0211 4.8738 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700002976.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:59 Heat of formation + Delta-G solvation = 57.232721 kcal Electronic energy + Delta-G solvation = -11536.701274 eV Core-core repulsion = 9422.916289 eV Total energy + Delta-G solvation = -2113.784985 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.83748 -35.18809 -34.16021 -32.73727 -30.48838 -27.85577 -26.34495 -23.43681 -22.61515 -21.52059 -17.49261 -17.36358 -16.07012 -15.24665 -14.93152 -14.35557 -13.49644 -13.14169 -12.96641 -12.56588 -12.46339 -11.97614 -11.37773 -11.21087 -10.98138 -10.79218 -10.67621 -10.15800 -9.79147 -8.93041 -8.74992 -8.70386 -6.97585 -5.78120 -3.08702 1.05709 1.44226 3.44324 3.48334 3.49679 3.94711 4.31808 4.48668 4.61708 4.77778 5.05661 5.38583 5.50451 5.58388 5.69468 5.89692 5.98135 6.08109 6.28251 6.43819 6.61990 6.77744 7.60620 7.66776 8.12989 8.38201 9.50048 10.03240 10.39179 11.44451 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.061795 B = 0.008912 C = 0.008563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.005017 B = 3141.124869 C = 3269.053672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.092 3.908 3 N -0.446 5.446 4 C 0.039 3.961 5 C 0.036 3.964 6 N -0.425 5.425 7 C 0.090 3.910 8 C 0.199 3.801 9 N -0.721 5.721 10 C -0.242 4.242 11 H 0.073 0.927 12 C -0.011 4.011 13 N -0.932 5.932 14 Si 0.911 3.089 15 H -0.285 1.285 16 H -0.291 1.291 17 H -0.285 1.285 18 H 0.087 0.913 19 H 0.071 0.929 20 H 0.087 0.913 21 H 0.164 0.836 22 H 0.164 0.836 23 H 0.045 0.955 24 H 0.040 0.960 25 H 0.384 0.616 26 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.827 8.057 -8.224 11.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.049 4.049 3 N -0.162 5.162 4 C -0.121 4.121 5 C -0.124 4.124 6 N -0.139 5.139 7 C -0.051 4.051 8 C 0.071 3.929 9 N -0.366 5.366 10 C -0.373 4.373 11 H 0.091 0.909 12 C -0.207 4.207 13 N -0.580 5.580 14 Si 0.742 3.258 15 H -0.212 1.212 16 H -0.217 1.217 17 H -0.211 1.211 18 H 0.106 0.894 19 H 0.090 0.910 20 H 0.105 0.895 21 H 0.181 0.819 22 H 0.181 0.819 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.218 0.782 26 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.738 7.889 -8.235 11.728 hybrid contribution -0.072 -0.567 0.612 0.838 sum 2.666 7.322 -7.623 10.901 Atomic orbital electron populations 1.20766 0.87563 1.03338 1.04179 1.22170 0.98607 0.88876 0.95210 1.68254 1.08871 1.29451 1.09609 1.23637 0.90997 0.99577 0.97910 1.23719 1.01684 0.89028 0.97953 1.68352 1.08666 1.29446 1.07471 1.22558 0.90318 0.97457 0.94811 1.19637 0.95064 0.88003 0.90212 1.42188 1.68402 1.26212 0.99840 1.19177 1.28086 0.98159 0.91890 0.90861 1.24763 1.01467 0.98994 0.95481 1.69668 1.51086 1.38935 0.98355 0.86214 0.79580 0.83144 0.76897 1.21168 1.21695 1.21131 0.89414 0.91026 0.89466 0.81905 0.81869 0.93755 0.94188 0.78225 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.54 9.79 36.01 0.35 -1.19 15 2 C 0.09 1.62 6.78 -82.41 -0.56 1.06 15 3 N -0.45 -7.38 10.42 -9.29 -0.10 -7.48 15 4 C 0.04 0.54 11.23 -17.37 -0.20 0.35 15 5 C 0.04 0.53 11.23 -17.37 -0.19 0.34 15 6 N -0.42 -7.98 10.42 -9.29 -0.10 -8.08 15 7 C 0.09 1.73 6.15 -82.42 -0.51 1.22 15 8 C 0.20 4.18 6.16 -5.19 -0.03 4.14 15 9 N -0.72 -18.64 5.59 -61.08 -0.34 -18.98 15 10 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 15 11 H 0.07 1.94 7.83 -52.48 -0.41 1.53 15 12 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 15 13 N -0.93 -28.49 13.06 55.49 0.72 -27.76 15 14 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 15 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 16 H -0.29 -7.20 7.11 56.52 0.40 -6.80 15 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 18 H 0.09 1.42 8.14 -51.93 -0.42 1.00 15 19 H 0.07 0.94 8.14 -51.93 -0.42 0.51 15 20 H 0.09 1.28 5.95 -51.93 -0.31 0.97 15 21 H 0.16 1.57 8.06 -52.49 -0.42 1.15 15 22 H 0.16 1.76 8.06 -52.48 -0.42 1.33 15 23 H 0.05 0.86 5.94 -51.93 -0.31 0.55 15 24 H 0.04 0.86 8.14 -51.93 -0.42 0.44 15 25 H 0.38 10.75 7.66 -40.82 -0.31 10.44 15 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 15 LS Contribution 233.43 15.07 3.52 3.52 Total: -1.00 -32.10 233.43 -5.29 -37.39 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -2.59 Total: 5.50 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -1.38 Total: -1.40 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: 0.19 Total: -62.30 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -32.10 -5.29 -37.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700002976.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.626 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds