Wall clock time and date at job start Mon Mar 30 2020 02:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30686 * 1 3 3 Si 1.86803 * 119.99791 * 2 1 4 4 H 1.48503 * 109.46800 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47257 * 299.99730 * 3 2 1 6 6 H 1.48497 * 109.46908 * 60.00204 * 3 2 1 7 7 C 1.40305 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00129 * 180.02562 * 7 2 1 9 9 C 1.40079 * 120.00064 * 0.02562 * 7 2 1 10 10 C 1.35030 * 119.99677 * 187.46624 * 9 7 2 11 11 C 1.51521 * 121.01028 * 5.66218 * 10 9 7 12 12 C 1.53906 * 107.77145 * 134.74029 * 11 10 9 13 13 H 1.08997 * 112.43006 * 181.87822 * 12 11 10 14 14 C 1.54464 * 107.94246 * 305.97484 * 12 11 10 15 15 C 1.54226 * 105.06292 * 90.11560 * 14 12 11 16 16 C 1.54462 * 105.06294 * 0.02562 * 15 14 12 17 17 H 1.09005 * 112.52091 * 145.81232 * 16 15 14 18 18 C 1.51529 * 120.99635 * 185.95160 * 10 9 7 19 19 N 1.48620 * 107.38682 * 58.15479 * 12 11 10 20 20 H 0.96999 * 120.00388 * 0.02562 * 1 2 3 21 21 H 1.07998 * 119.99617 * 7.46163 * 9 7 2 22 22 H 1.08996 * 109.80309 * 254.31654 * 11 10 9 23 23 H 1.09004 * 109.79539 * 15.18041 * 11 10 9 24 24 H 1.08996 * 110.32536 * 209.01364 * 14 12 11 25 25 H 1.09000 * 110.32310 * 331.11820 * 14 12 11 26 26 H 1.08999 * 110.31926 * 241.10635 * 15 14 12 27 27 H 1.08996 * 110.32191 * 118.89739 * 15 14 12 28 28 H 1.08994 * 109.80559 * 344.82262 * 18 10 9 29 29 H 1.08997 * 109.80193 * 105.69696 * 18 10 9 30 30 H 1.00897 * 111.00075 * 44.74133 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.7008 1.3464 0.0006 5 1 1.8821 2.3964 -1.2125 6 1 1.8821 2.3964 1.2125 7 6 2.0084 -1.2151 0.0005 8 1 3.0884 -1.2151 0.0010 9 6 1.3080 -2.4282 0.0005 10 6 1.9746 -3.5926 0.1530 11 6 3.4599 -3.6083 0.4524 12 6 3.7011 -4.6287 1.5791 13 1 4.7480 -4.6777 1.8787 14 6 2.7764 -4.2608 2.7604 15 6 1.4709 -5.0413 2.5056 16 6 1.7162 -5.8161 1.1920 17 1 1.2204 -6.7868 1.1810 18 6 1.2610 -4.9230 0.0234 19 7 3.1942 -5.9427 1.1043 20 1 -0.4851 0.8400 -0.0004 21 1 0.2349 -2.4321 -0.1213 22 1 4.0131 -3.9045 -0.4388 23 1 3.7818 -2.6184 0.7758 24 1 3.2254 -4.5717 3.7037 25 1 2.5824 -3.1883 2.7695 26 1 0.6346 -4.3522 2.3885 27 1 1.2790 -5.7354 3.3238 28 1 0.1830 -4.7703 0.0735 29 1 1.5246 -5.3926 -0.9243 30 1 3.4863 -6.1214 0.1552 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718967296.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:33 Heat of formation + Delta-G solvation = -5.816573 kcal Electronic energy + Delta-G solvation = -12337.320223 eV Core-core repulsion = 10324.341559 eV Total energy + Delta-G solvation = -2012.978664 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.22839 -34.23881 -31.73521 -30.56290 -29.63764 -27.22324 -23.70574 -23.13114 -19.85294 -19.55370 -17.70742 -16.42763 -15.49516 -14.67798 -14.24421 -13.23799 -13.04101 -12.80690 -12.09331 -11.87782 -11.68270 -11.36009 -11.13770 -10.94814 -10.91320 -10.43712 -10.28743 -10.05840 -9.66625 -9.52152 -9.46010 -8.84980 -7.82237 -7.34009 -6.75320 -4.21047 2.92215 3.08368 3.14289 3.84883 3.97241 5.00352 5.35062 5.50590 5.58364 5.81821 6.05591 6.14489 6.23735 6.38845 6.48108 6.52056 6.64974 6.72731 6.88045 6.94005 7.06589 7.08641 7.20696 7.21667 7.38894 7.59445 7.92162 8.02431 8.42955 8.68425 9.08801 9.27596 10.28113 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.055700 B = 0.010759 C = 0.010217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.569555 B = 2601.802174 C = 2740.001768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.072 3.928 3 Si 0.908 3.092 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.458 4.458 8 H 0.074 0.926 9 C 0.062 3.938 10 C -0.389 4.389 11 C -0.058 4.058 12 C 0.065 3.935 13 H 0.074 0.926 14 C -0.103 4.103 15 C -0.102 4.102 16 C 0.065 3.935 17 H 0.074 0.926 18 C -0.062 4.062 19 N -0.666 5.666 20 H 0.279 0.721 21 H 0.077 0.923 22 H 0.025 0.975 23 H 0.062 0.938 24 H 0.046 0.954 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.045 0.955 29 H 0.029 0.971 30 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.872 -3.966 2.315 5.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.488 4.488 8 H 0.092 0.908 9 C 0.042 3.958 10 C -0.393 4.393 11 C -0.096 4.096 12 C -0.045 4.045 13 H 0.092 0.908 14 C -0.141 4.141 15 C -0.140 4.140 16 C -0.044 4.044 17 H 0.092 0.908 18 C -0.101 4.101 19 N -0.294 5.294 20 H 0.090 0.910 21 H 0.095 0.905 22 H 0.043 0.957 23 H 0.080 0.920 24 H 0.065 0.935 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.782 -4.208 2.945 5.841 hybrid contribution 0.012 1.514 -0.870 1.746 sum 2.794 -2.694 2.075 4.401 Atomic orbital electron populations 1.69578 1.07684 1.29258 1.38282 1.26119 0.94754 1.01680 0.91863 0.86268 0.80912 0.81118 0.78418 1.18451 1.19999 1.19973 1.19679 0.94756 0.90663 1.43709 0.90794 1.19645 0.96024 0.91413 0.88708 1.20790 0.93941 0.92166 1.32413 1.20858 0.95894 0.98096 0.94786 1.22822 0.96970 0.88948 0.95771 0.90819 1.22111 0.95085 1.00693 0.96238 1.22088 0.98366 0.97769 0.95742 1.22798 0.88950 0.96681 0.96020 0.90832 1.20917 0.98377 0.95734 0.95046 1.63782 1.07704 1.31054 1.26843 0.91035 0.90537 0.95680 0.91991 0.93536 0.90865 0.91339 0.93441 0.93667 0.95229 0.85824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.80 12.88 55.57 0.72 -21.09 16 2 C 0.07 1.85 5.50 -17.26 -0.09 1.75 16 3 Si 0.91 19.24 29.56 -169.99 -5.03 14.21 16 4 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.46 -12.23 8.51 -38.11 -0.32 -12.56 16 8 H 0.07 1.95 5.95 -52.48 -0.31 1.64 16 9 C 0.06 1.65 9.04 -40.03 -0.36 1.29 16 10 C -0.39 -9.18 4.23 -99.68 -0.42 -9.60 16 11 C -0.06 -1.26 5.01 -27.01 -0.14 -1.40 16 12 C 0.06 1.23 4.55 -65.52 -0.30 0.94 16 13 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 14 C -0.10 -1.96 6.08 -25.32 -0.15 -2.12 16 15 C -0.10 -1.90 6.08 -25.32 -0.15 -2.05 16 16 C 0.07 1.22 4.55 -65.50 -0.30 0.92 16 17 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 18 C -0.06 -1.30 5.40 -26.97 -0.15 -1.45 16 19 N -0.67 -12.27 7.35 -94.74 -0.70 -12.97 16 20 H 0.28 6.75 8.29 -40.82 -0.34 6.41 16 21 H 0.08 2.15 7.40 -52.49 -0.39 1.77 16 22 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 1.42 5.95 -51.93 -0.31 1.11 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 1.53 7.71 -51.93 -0.40 1.13 16 26 H 0.07 1.38 7.71 -51.93 -0.40 0.98 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.95 8.00 -51.93 -0.42 0.54 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.33 5.82 8.32 -39.29 -0.33 5.50 16 LS Contribution 238.23 15.07 3.59 3.59 Total: -1.00 -26.40 238.23 -8.03 -34.42 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -4.22 Total: 6.10 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: -2.39 Total: -24.27 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.02 Total: -34.05 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -26.40 -8.03 -34.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718967296.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.607 kcal (2) G-P(sol) polarization free energy of solvation -26.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds