Wall clock time and date at job start Mon Mar 30 2020 02:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30686 * 1 3 3 Si 1.86803 * 119.99791 * 2 1 4 4 H 1.48503 * 109.46800 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47257 * 299.99730 * 3 2 1 6 6 H 1.48497 * 109.46908 * 60.00204 * 3 2 1 7 7 C 1.40305 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00129 * 180.02562 * 7 2 1 9 9 C 1.40079 * 120.00064 * 0.02562 * 7 2 1 10 10 C 1.35030 * 119.99677 * 187.46624 * 9 7 2 11 11 C 1.51521 * 121.01028 * 5.66218 * 10 9 7 12 12 C 1.53906 * 107.77145 * 134.74029 * 11 10 9 13 13 H 1.08997 * 112.43006 * 181.87822 * 12 11 10 14 14 C 1.54464 * 107.94246 * 305.97484 * 12 11 10 15 15 C 1.54226 * 105.06292 * 90.11560 * 14 12 11 16 16 C 1.54462 * 105.06294 * 0.02562 * 15 14 12 17 17 H 1.09005 * 112.52091 * 145.81232 * 16 15 14 18 18 C 1.51529 * 120.99635 * 185.95160 * 10 9 7 19 19 N 1.48620 * 107.38682 * 58.15479 * 12 11 10 20 20 H 0.96999 * 120.00388 * 0.02562 * 1 2 3 21 21 H 1.07998 * 119.99617 * 7.46163 * 9 7 2 22 22 H 1.08996 * 109.80309 * 254.31654 * 11 10 9 23 23 H 1.09004 * 109.79539 * 15.18041 * 11 10 9 24 24 H 1.08996 * 110.32536 * 209.01364 * 14 12 11 25 25 H 1.09000 * 110.32310 * 331.11820 * 14 12 11 26 26 H 1.08999 * 110.31926 * 241.10635 * 15 14 12 27 27 H 1.08996 * 110.32191 * 118.89739 * 15 14 12 28 28 H 1.08994 * 109.80559 * 344.82262 * 18 10 9 29 29 H 1.08997 * 109.80193 * 105.69696 * 18 10 9 30 30 H 1.00897 * 111.00075 * 44.74133 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.7008 1.3464 0.0006 5 1 1.8821 2.3964 -1.2125 6 1 1.8821 2.3964 1.2125 7 6 2.0084 -1.2151 0.0005 8 1 3.0884 -1.2151 0.0010 9 6 1.3080 -2.4282 0.0005 10 6 1.9746 -3.5926 0.1530 11 6 3.4599 -3.6083 0.4524 12 6 3.7011 -4.6287 1.5791 13 1 4.7480 -4.6777 1.8787 14 6 2.7764 -4.2608 2.7604 15 6 1.4709 -5.0413 2.5056 16 6 1.7162 -5.8161 1.1920 17 1 1.2204 -6.7868 1.1810 18 6 1.2610 -4.9230 0.0234 19 7 3.1942 -5.9427 1.1043 20 1 -0.4851 0.8400 -0.0004 21 1 0.2349 -2.4321 -0.1213 22 1 4.0131 -3.9045 -0.4388 23 1 3.7818 -2.6184 0.7758 24 1 3.2254 -4.5717 3.7037 25 1 2.5824 -3.1883 2.7695 26 1 0.6346 -4.3522 2.3885 27 1 1.2790 -5.7354 3.3238 28 1 0.1830 -4.7703 0.0735 29 1 1.5246 -5.3926 -0.9243 30 1 3.4863 -6.1214 0.1552 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718967296.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:33 Heat of formation + Delta-G solvation = -22.088120 kcal Electronic energy + Delta-G solvation = -12338.025811 eV Core-core repulsion = 10324.341559 eV Total energy + Delta-G solvation = -2013.684251 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.84823 -36.16585 -33.62528 -32.19584 -31.16192 -29.09699 -25.54068 -24.85484 -21.50894 -21.11901 -19.49908 -18.34482 -17.22458 -16.29278 -15.96075 -15.00076 -14.92704 -14.39219 -13.87941 -13.47584 -13.28744 -13.06746 -12.72363 -12.67203 -12.62452 -12.11346 -11.99331 -11.76676 -11.48028 -11.34743 -11.06195 -10.70838 -9.60516 -9.13996 -8.67215 -6.20941 1.21167 1.34616 1.49539 1.94565 2.20008 3.37797 3.47505 3.94805 4.05877 4.29509 4.43008 4.52524 4.66262 4.68726 4.82695 4.90519 5.03844 5.15507 5.17593 5.26402 5.30128 5.31473 5.37704 5.54457 5.58746 5.92313 6.06851 6.43908 6.54293 6.66921 7.09712 7.25916 8.38927 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.055700 B = 0.010759 C = 0.010217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.569555 B = 2601.802174 C = 2740.001768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.025 3.975 3 Si 0.981 3.019 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.486 4.486 8 H 0.072 0.928 9 C 0.026 3.974 10 C -0.368 4.368 11 C -0.060 4.060 12 C 0.070 3.930 13 H 0.098 0.902 14 C -0.106 4.106 15 C -0.104 4.104 16 C 0.072 3.928 17 H 0.101 0.899 18 C -0.067 4.067 19 N -0.655 5.655 20 H 0.287 0.713 21 H 0.047 0.953 22 H 0.031 0.969 23 H 0.045 0.955 24 H 0.072 0.928 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.074 0.926 28 H 0.035 0.965 29 H 0.039 0.961 30 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.266 -4.897 2.935 7.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.187 4.187 3 Si 0.802 3.198 4 H -0.182 1.182 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.517 4.517 8 H 0.090 0.910 9 C 0.006 3.994 10 C -0.372 4.372 11 C -0.098 4.098 12 C -0.039 4.039 13 H 0.116 0.884 14 C -0.144 4.144 15 C -0.142 4.142 16 C -0.038 4.038 17 H 0.119 0.881 18 C -0.106 4.106 19 N -0.283 5.283 20 H 0.097 0.903 21 H 0.065 0.935 22 H 0.049 0.951 23 H 0.063 0.937 24 H 0.091 0.909 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.093 0.907 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.176 -5.161 3.561 7.533 hybrid contribution -0.436 1.655 -1.075 2.021 sum 3.739 -3.506 2.485 5.696 Atomic orbital electron populations 1.69647 1.09169 1.30597 1.39459 1.26981 0.95569 1.05083 0.91099 0.85170 0.79333 0.76394 0.78889 1.18169 1.19036 1.19028 1.19819 0.94688 0.91643 1.45526 0.91014 1.19635 0.94793 0.93050 0.91947 1.21285 0.95236 0.92561 1.28117 1.20894 0.94215 0.98441 0.96268 1.22822 0.98404 0.88225 0.94488 0.88409 1.22119 0.95511 0.99109 0.97628 1.22110 0.97362 0.97858 0.96877 1.22825 0.89323 0.97229 0.94438 0.88116 1.21005 0.97646 0.95004 0.96923 1.63811 1.07152 1.29955 1.27342 0.90312 0.93508 0.95066 0.93677 0.90892 0.93658 0.93766 0.90714 0.94645 0.94241 0.85074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.27 12.88 21.89 0.28 -46.99 16 2 C 0.02 1.30 5.50 85.37 0.47 1.77 16 3 Si 0.98 39.89 29.56 68.60 2.03 41.92 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 6 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 7 C -0.49 -26.88 8.51 23.22 0.20 -26.68 16 8 H 0.07 3.88 5.95 -2.91 -0.02 3.87 16 9 C 0.03 1.42 9.04 21.98 0.20 1.62 16 10 C -0.37 -17.50 4.23 -16.66 -0.07 -17.57 16 11 C -0.06 -2.54 5.01 30.42 0.15 -2.39 16 12 C 0.07 2.50 4.55 45.39 0.21 2.71 16 13 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 14 C -0.11 -3.81 6.08 31.51 0.19 -3.62 16 15 C -0.10 -3.68 6.08 31.51 0.19 -3.49 16 16 C 0.07 2.48 4.55 45.41 0.21 2.69 16 17 H 0.10 3.03 8.14 -2.38 -0.02 3.01 16 18 C -0.07 -2.75 5.40 30.44 0.16 -2.59 16 19 N -0.65 -21.80 7.35 -453.66 -3.34 -25.13 16 20 H 0.29 14.22 8.29 -92.71 -0.77 13.45 16 21 H 0.05 2.80 7.40 -2.91 -0.02 2.78 16 22 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 23 H 0.04 2.07 5.95 -2.38 -0.01 2.05 16 24 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.04 1.88 7.71 -2.39 -0.02 1.86 16 26 H 0.04 1.77 7.71 -2.39 -0.02 1.75 16 27 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.03 1.50 8.00 -2.39 -0.02 1.48 16 29 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.33 10.68 8.32 -89.70 -0.75 9.93 16 Total: -1.00 -57.29 238.23 1.26 -56.03 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.38 Total: 21.73 kcal Atomic # 6 Polarization: -49.46 SS G_CDS: 1.91 Total: -47.55 kcal Atomic # 7 Polarization: -69.07 SS G_CDS: -3.05 Total: -72.12 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -57.29 1.26 -56.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718967296.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.943 kcal (2) G-P(sol) polarization free energy of solvation -57.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds