Wall clock time and date at job start Mon Mar 30 2020 02:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47332 * 306.81937 * 3 2 1 5 5 H 1.09002 * 109.52702 * 305.08403 * 4 3 2 6 6 C 1.53035 * 109.49890 * 185.00058 * 4 3 2 7 7 C 1.53043 * 109.53665 * 178.68297 * 6 4 3 8 8 C 1.53196 * 109.31318 * 61.37032 * 7 6 4 9 9 N 1.46922 * 108.88838 * 305.29377 * 8 7 6 10 10 C 1.36945 * 120.62848 * 233.67928 * 9 8 7 11 11 H 1.07999 * 120.00157 * 152.59545 * 10 9 8 12 12 C 1.38807 * 119.99756 * 332.59583 * 10 9 8 13 13 N 1.31622 * 120.00269 * 159.34768 * 12 10 9 14 14 Si 1.86806 * 120.00102 * 339.34630 * 12 10 9 15 15 H 1.48494 * 109.47076 * 92.96261 * 14 12 10 16 16 H 1.48500 * 109.46865 * 212.95938 * 14 12 10 17 17 H 1.48497 * 109.47109 * 332.95955 * 14 12 10 18 18 C 1.47204 * 118.56120 * 53.53831 * 9 8 7 19 19 H 4.44653 * 5.63299 * 180.02562 * 4 1 2 20 20 H 1.09005 * 109.46939 * 186.82131 * 3 2 1 21 21 H 1.08995 * 109.47103 * 66.82506 * 3 2 1 22 22 H 1.09003 * 109.46085 * 58.66959 * 6 4 3 23 23 H 1.08999 * 109.45114 * 298.69949 * 6 4 3 24 24 H 1.08992 * 109.50251 * 301.41412 * 7 6 4 25 25 H 1.09005 * 109.52118 * 181.33185 * 7 6 4 26 26 H 1.08997 * 109.58552 * 65.14377 * 8 7 6 27 27 H 1.08990 * 109.58871 * 185.43060 * 8 7 6 28 28 H 0.96991 * 120.00110 * 180.02562 * 13 12 10 29 29 H 1.09001 * 109.53802 * 186.67718 * 18 9 8 30 30 H 1.09001 * 109.67896 * 66.36810 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1564 -0.8636 1.1547 5 1 2.7210 -0.5146 2.0911 6 6 4.6815 -0.7637 1.2321 7 6 5.1903 -1.6018 2.4072 8 6 4.8127 -3.0696 2.1837 9 7 3.3626 -3.1596 1.9651 10 6 2.5938 -4.0022 2.7229 11 1 1.5514 -3.7761 2.8927 12 6 3.1541 -5.1469 3.2729 13 7 2.5785 -5.7326 4.3015 14 14 4.7253 -5.8561 2.5532 15 1 5.8960 -5.3080 3.2841 16 1 4.7070 -7.3351 2.6861 17 1 4.8219 -5.4892 1.1175 18 6 2.7556 -2.3229 0.9170 19 1 -1.0499 -0.0003 0.0001 20 1 3.0088 1.0213 0.1221 21 1 3.0095 -0.4036 -0.9447 22 1 4.9705 0.2773 1.3767 23 1 5.1172 -1.1361 0.3049 24 1 4.7358 -1.2459 3.3317 25 1 6.2744 -1.5117 2.4765 26 1 5.3385 -3.4531 1.3094 27 1 5.0870 -3.6552 3.0611 28 1 2.9703 -6.5322 4.6860 29 1 1.6704 -2.4154 0.9598 30 1 3.1115 -2.6448 -0.0616 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829774715.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:38 Heat of formation + Delta-G solvation = 62.449945 kcal Electronic energy + Delta-G solvation = -12168.209875 eV Core-core repulsion = 10158.191470 eV Total energy + Delta-G solvation = -2010.018406 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.18619 -34.59384 -32.70396 -30.89036 -30.59766 -26.63893 -25.21000 -21.98325 -21.65071 -19.28036 -17.77676 -16.64140 -15.35682 -14.74531 -14.09101 -13.83368 -13.65303 -13.17195 -12.76456 -12.38001 -12.07483 -11.82690 -11.42048 -10.87494 -10.75249 -10.50671 -10.08409 -9.92792 -9.82973 -9.71747 -9.55539 -9.36068 -8.56048 -6.91513 -5.90502 -3.25458 3.09635 3.11037 3.35086 3.51042 3.54948 4.57264 4.62729 4.98238 5.29044 5.35469 5.39319 5.52367 5.68729 5.84379 5.95668 6.12737 6.13563 6.21331 6.26777 6.38704 6.46462 6.64113 6.71880 6.78072 6.79194 7.05091 7.89720 8.01476 8.37576 8.99494 9.77202 10.16108 11.25722 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.042810 B = 0.012206 C = 0.010334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.888185 B = 2293.456606 C = 2708.930664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.172 4.172 3 C -0.008 4.008 4 C -0.102 4.102 5 H 0.074 0.926 6 C -0.104 4.104 7 C -0.135 4.135 8 C 0.124 3.876 9 N -0.607 5.607 10 C -0.257 4.257 11 H 0.084 0.916 12 C 0.021 3.979 13 N -0.910 5.910 14 Si 0.884 3.116 15 H -0.289 1.289 16 H -0.304 1.304 17 H -0.271 1.271 18 C 0.156 3.844 19 H 0.213 0.787 20 H 0.081 0.919 21 H 0.083 0.917 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.053 0.947 26 H 0.023 0.977 27 H 0.071 0.929 28 H 0.262 0.738 29 H 0.061 0.939 30 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.777 10.419 -7.566 13.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.172 4.172 3 C -0.045 4.045 4 C -0.122 4.122 5 H 0.093 0.907 6 C -0.142 4.142 7 C -0.174 4.174 8 C -0.002 4.002 9 N -0.330 5.330 10 C -0.385 4.385 11 H 0.102 0.898 12 C -0.177 4.177 13 N -0.554 5.554 14 Si 0.715 3.285 15 H -0.217 1.217 16 H -0.232 1.232 17 H -0.196 1.196 18 C 0.030 3.970 19 H 0.230 0.770 20 H 0.099 0.901 21 H 0.101 0.899 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.041 0.959 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 2.758 10.250 -7.446 12.967 hybrid contribution 0.663 -0.516 -0.277 0.884 sum 3.421 9.735 -7.724 12.889 Atomic orbital electron populations 1.24792 0.95904 1.01842 1.01625 1.23170 0.94602 0.99661 0.99816 1.18829 0.84698 1.00727 1.00248 1.21662 0.95607 0.97494 0.97444 0.90748 1.21445 0.94972 0.98910 0.98842 1.22006 0.99063 0.97925 0.98454 1.21344 0.85513 0.94299 0.99042 1.44418 1.02766 1.47125 1.38703 1.18928 0.95551 1.00138 1.23880 0.89819 1.25271 0.97912 0.96861 0.97656 1.69841 1.41540 1.21931 1.22039 0.86926 0.83768 0.77412 0.80441 1.21666 1.23215 1.19617 1.20999 0.97449 0.87939 0.90629 0.76994 0.90095 0.89875 0.92944 0.92480 0.91782 0.92812 0.95872 0.91120 0.92835 0.92017 0.96050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.18 19.25 29.55 0.57 -2.61 16 2 C -0.17 -2.62 12.43 -37.12 -0.46 -3.08 16 3 C -0.01 -0.11 5.19 -29.52 -0.15 -0.26 16 4 C -0.10 -1.71 2.31 -90.50 -0.21 -1.92 16 5 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 6 C -0.10 -1.60 5.17 -26.69 -0.14 -1.74 16 7 C -0.14 -2.43 6.08 -26.61 -0.16 -2.59 16 8 C 0.12 2.77 4.20 -3.71 -0.02 2.76 16 9 N -0.61 -14.98 2.78 -172.10 -0.48 -15.46 16 10 C -0.26 -7.43 10.05 -15.06 -0.15 -7.58 16 11 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 12 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 13 N -0.91 -28.51 13.97 55.49 0.78 -27.74 16 14 Si 0.88 22.93 24.35 -169.99 -4.14 18.80 16 15 H -0.29 -7.21 6.62 56.52 0.37 -6.83 16 16 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 17 H -0.27 -6.93 6.64 56.52 0.38 -6.55 16 18 C 0.16 3.22 5.52 -3.56 -0.02 3.20 16 19 H 0.21 2.25 7.80 -54.09 -0.42 1.83 16 20 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 21 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.02 0.51 7.08 -51.93 -0.37 0.15 16 27 H 0.07 1.73 4.49 -51.93 -0.23 1.50 16 28 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 29 H 0.06 1.33 7.38 -51.93 -0.38 0.95 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 245.14 15.07 3.69 3.69 Total: -1.00 -31.59 245.14 -5.38 -36.97 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -4.40 Total: -2.98 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -0.83 Total: -13.28 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.30 Total: -43.20 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.14 Total: 18.80 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -31.59 -5.38 -36.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829774715.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.419 kcal (2) G-P(sol) polarization free energy of solvation -31.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds