Wall clock time and date at job start Mon Mar 30 2020 02:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.09000 * 109.51038 * 358.39624 * 3 2 1 5 5 C 1.53129 * 109.53617 * 118.45347 * 3 2 1 6 6 C 1.53123 * 109.15931 * 177.57387 * 5 3 2 7 7 C 1.53039 * 109.31189 * 302.40768 * 6 5 3 8 8 N 1.46842 * 109.52266 * 59.15550 * 7 6 5 9 9 C 1.46910 * 110.99703 * 174.16402 * 8 7 6 10 10 C 1.50695 * 109.47054 * 66.04883 * 9 8 7 11 11 H 1.07998 * 120.00554 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99950 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00189 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00276 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47077 * 59.99907 * 14 12 10 16 16 H 1.48496 * 109.47409 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47138 * 300.00054 * 14 12 10 18 18 C 1.46849 * 111.20050 * 298.25785 * 8 7 6 19 19 H 4.18791 * 15.03123 * 359.97438 * 4 2 1 20 20 H 1.09000 * 109.49266 * 57.69079 * 5 3 2 21 21 H 1.08995 * 109.55725 * 297.49825 * 5 3 2 22 22 H 1.09002 * 109.50371 * 182.44317 * 6 5 3 23 23 H 1.09003 * 109.50070 * 62.36477 * 6 5 3 24 24 H 1.08995 * 109.46501 * 179.17754 * 7 6 5 25 25 H 1.09009 * 109.45500 * 299.14277 * 7 6 5 26 26 H 1.08996 * 109.46709 * 186.04933 * 9 8 7 27 27 H 1.09002 * 109.46552 * 306.04948 * 9 8 7 28 28 H 0.96995 * 120.00220 * 179.97438 * 13 12 10 29 29 H 1.09001 * 109.46071 * 181.75754 * 18 8 7 30 30 H 1.08995 * 109.46417 * 301.72694 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0104 -1.0262 0.0288 5 6 3.1577 0.6885 -1.2688 6 6 4.6876 0.7384 -1.2312 7 6 5.1390 1.4749 0.0321 8 7 4.6249 0.7769 1.2173 9 6 5.1525 1.3753 2.4509 10 6 4.6163 2.7758 2.5990 11 1 3.9506 3.1811 1.8514 12 6 4.9765 3.5403 3.6884 13 7 5.7876 3.0470 4.5986 14 14 4.3126 5.2766 3.8717 15 1 2.8296 5.2351 3.9371 16 1 4.8458 5.8814 5.1187 17 1 4.7339 6.0934 2.7053 18 6 3.1565 0.7586 1.2275 19 1 -1.0500 -0.0011 0.0005 20 1 2.7613 1.7026 -1.3179 21 1 2.8330 0.1267 -2.1446 22 1 5.0563 1.2655 -2.1111 23 1 5.0847 -0.2767 -1.2221 24 1 6.2281 1.4991 0.0688 25 1 4.7536 2.4944 0.0153 26 1 4.8432 0.7754 3.3067 27 1 6.2410 1.4061 2.4029 28 1 6.0413 3.5849 5.3648 29 1 2.8058 0.2625 2.1325 30 1 2.7804 1.7814 1.2052 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847031662.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:39 Heat of formation + Delta-G solvation = 22.192201 kcal Electronic energy + Delta-G solvation = -12020.161086 eV Core-core repulsion = 10008.396973 eV Total energy + Delta-G solvation = -2011.764113 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.02772 -35.99945 -34.45249 -33.18505 -30.96637 -28.74136 -25.77805 -24.42599 -23.08286 -20.81994 -18.96745 -18.47010 -16.93282 -16.16185 -15.96394 -15.48834 -15.05249 -14.76694 -14.42766 -13.67988 -13.43040 -13.03031 -12.91267 -12.64421 -12.44756 -12.16306 -11.89185 -11.81375 -11.64411 -11.45966 -10.91728 -10.79440 -10.63041 -9.06655 -8.17921 -6.38110 1.34392 1.35954 1.44285 1.90158 1.95397 2.34849 3.06446 3.24864 3.65136 3.99311 4.09840 4.16565 4.41448 4.51003 4.67689 4.84538 4.92729 4.96690 5.08439 5.18078 5.19611 5.24725 5.30751 5.32833 5.48354 5.71466 6.02251 6.22258 6.51000 6.75018 6.82347 7.33301 8.84358 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.038053 B = 0.010646 C = 0.009556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.645119 B = 2629.458221 C = 2929.405185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.212 4.212 3 C 0.024 3.976 4 H 0.101 0.899 5 C -0.102 4.102 6 C -0.106 4.106 7 C 0.058 3.942 8 N -0.540 5.540 9 C 0.199 3.801 10 C -0.560 4.560 11 H 0.054 0.946 12 C 0.012 3.988 13 N -0.925 5.925 14 Si 0.957 3.043 15 H -0.272 1.272 16 H -0.279 1.279 17 H -0.269 1.269 18 C 0.082 3.918 19 H 0.251 0.749 20 H 0.051 0.949 21 H 0.088 0.912 22 H 0.089 0.911 23 H 0.078 0.922 24 H 0.061 0.939 25 H 0.016 0.984 26 H 0.004 0.996 27 H 0.010 0.990 28 H 0.266 0.734 29 H 0.050 0.950 30 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.541 -3.859 -10.923 13.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.212 4.212 3 C 0.005 3.995 4 H 0.119 0.881 5 C -0.140 4.140 6 C -0.143 4.143 7 C -0.071 4.071 8 N -0.263 5.263 9 C 0.073 3.927 10 C -0.599 4.599 11 H 0.072 0.928 12 C -0.188 4.188 13 N -0.564 5.564 14 Si 0.781 3.219 15 H -0.197 1.197 16 H -0.204 1.204 17 H -0.194 1.194 18 C -0.047 4.047 19 H 0.267 0.733 20 H 0.070 0.930 21 H 0.107 0.893 22 H 0.107 0.893 23 H 0.096 0.904 24 H 0.079 0.921 25 H 0.034 0.966 26 H 0.022 0.978 27 H 0.028 0.972 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -6.257 -4.310 -10.776 13.185 hybrid contribution -0.486 1.816 0.852 2.064 sum -6.742 -2.495 -9.924 12.254 Atomic orbital electron populations 1.25674 0.96631 1.00055 0.99396 1.23399 0.94892 1.01339 1.01616 1.18323 0.84337 1.01167 0.95627 0.88134 1.21542 0.95936 1.00224 0.96257 1.21594 0.94891 1.01645 0.96208 1.22004 0.99209 0.95215 0.90634 1.62362 1.07081 1.53490 1.03384 1.19417 0.94259 0.91805 0.87245 1.21945 1.29284 1.00980 1.07675 0.92794 1.25827 0.95109 1.02511 0.95358 1.70052 1.35439 1.38893 1.12064 0.85630 0.78770 0.79669 0.77787 1.19689 1.20391 1.19361 1.21730 0.88555 0.97619 0.96806 0.73305 0.92989 0.89312 0.89296 0.90366 0.92054 0.96610 0.97811 0.97233 0.92492 0.93150 0.96450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.13 19.25 74.32 1.43 -3.70 16 2 C -0.21 -6.52 12.56 31.12 0.39 -6.13 16 3 C 0.02 0.77 2.73 -12.55 -0.03 0.73 16 4 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 5 C -0.10 -2.84 5.25 30.68 0.16 -2.68 16 6 C -0.11 -2.98 6.09 30.65 0.19 -2.79 16 7 C 0.06 2.24 5.14 86.33 0.44 2.68 16 8 N -0.54 -23.98 4.86 -900.92 -4.38 -28.36 16 9 C 0.20 10.83 5.13 85.55 0.44 11.27 16 10 C -0.56 -31.90 7.74 25.60 0.20 -31.71 16 11 H 0.05 3.05 5.84 -2.91 -0.02 3.03 16 12 C 0.01 0.66 5.46 84.65 0.46 1.12 16 13 N -0.93 -55.88 13.29 21.45 0.28 -55.59 16 14 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 15 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 18 C 0.08 3.38 4.25 86.32 0.37 3.75 16 19 H 0.25 4.00 7.80 -4.42 -0.03 3.97 16 20 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 21 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 22 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 23 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.06 2.39 8.06 -2.39 -0.02 2.38 16 25 H 0.02 0.67 7.03 -2.38 -0.02 0.65 16 26 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 27 H 0.01 0.55 8.06 -2.39 -0.02 0.53 16 28 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 29 H 0.05 2.20 8.12 -2.39 -0.02 2.18 16 30 H 0.02 0.80 6.57 -2.39 -0.02 0.78 16 Total: -1.00 -64.09 251.24 3.07 -61.02 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: 1.09 Total: 3.73 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: 4.04 Total: -27.44 kcal Atomic # 7 Polarization: -79.86 SS G_CDS: -4.09 Total: -83.95 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -64.09 3.07 -61.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847031662.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.208 kcal (2) G-P(sol) polarization free energy of solvation -64.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds