Wall clock time and date at job start Mon Mar 30 2020 02:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40127 * 126.49117 * 2 1 4 4 N 1.28668 * 108.93633 * 179.97438 * 3 2 1 5 5 C 1.34847 * 109.63266 * 359.97438 * 4 3 2 6 6 C 1.41495 * 126.02084 * 179.97438 * 5 4 3 7 7 H 1.07996 * 120.00138 * 179.97438 * 6 5 4 8 8 C 1.39744 * 119.99700 * 359.97438 * 6 5 4 9 9 N 1.30979 * 119.99890 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99791 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47330 * 89.99979 * 10 8 6 12 12 H 1.48501 * 109.46996 * 210.00316 * 10 8 6 13 13 H 1.48503 * 109.47254 * 329.99919 * 10 8 6 14 14 C 1.35018 * 126.49223 * 179.69124 * 2 1 3 15 15 C 1.50700 * 126.77364 * 0.02562 * 14 2 1 16 16 C 1.53006 * 117.49818 * 132.18468 * 15 14 2 17 17 C 1.53000 * 117.49753 * 63.56307 * 15 14 2 18 18 H 1.09005 * 109.47409 * 95.17378 * 1 2 3 19 19 H 1.09001 * 109.47391 * 335.16832 * 1 2 3 20 20 H 1.09000 * 109.47114 * 215.16865 * 1 2 3 21 21 H 0.97006 * 119.99995 * 180.02562 * 9 8 6 22 22 H 1.08997 * 115.54763 * 277.89015 * 15 14 2 23 23 H 1.09001 * 117.49770 * 0.02562 * 16 15 14 24 24 H 1.09000 * 117.49524 * 145.01831 * 16 15 14 25 25 H 1.09000 * 117.50005 * 214.97788 * 17 15 14 26 26 H 1.09003 * 117.50147 * 0.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2983 1.1265 0.0000 4 7 3.5251 0.7385 0.0005 5 6 3.5739 -0.6091 0.0015 6 6 4.7478 -1.3992 0.0018 7 1 4.6735 -2.4766 0.0030 8 6 6.0031 -0.7853 0.0005 9 7 6.0931 0.5214 -0.0014 10 14 7.5528 -1.8283 0.0002 11 1 7.9626 -2.1056 -1.3999 12 1 8.6409 -1.0983 0.6991 13 1 7.2870 -3.1101 0.7013 14 6 2.2679 -1.0854 0.0058 15 6 1.8340 -2.5286 0.0131 16 6 2.5038 -3.4727 -0.9875 17 6 1.0524 -3.0374 -1.1998 18 1 -0.3634 -0.0927 -1.0235 19 1 -0.3634 0.9326 0.4316 20 1 -0.3633 -0.8401 0.5919 21 1 6.9646 0.9476 -0.0027 22 1 1.5690 -2.9349 0.9892 23 1 3.2585 -3.0500 -1.6507 24 1 2.6796 -4.5004 -0.6697 25 1 0.2734 -3.7787 -1.0218 26 1 0.8524 -2.3284 -2.0033 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958544495.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:23 Heat of formation + Delta-G solvation = 112.622087 kcal Electronic energy + Delta-G solvation = -11904.478836 eV Core-core repulsion = 9793.095714 eV Total energy + Delta-G solvation = -2111.383122 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.96051 -36.30562 -33.67076 -32.33635 -29.19686 -26.76305 -24.81009 -22.37496 -21.87349 -20.12820 -18.77157 -17.11244 -15.57134 -14.79480 -14.63670 -14.15079 -13.60143 -13.05462 -12.28763 -12.19116 -11.75778 -11.11633 -11.09053 -11.03524 -10.67930 -10.27104 -10.03271 -9.72687 -9.68025 -9.24238 -8.74030 -8.37096 -7.36704 -6.32254 -4.11209 2.84938 3.18962 3.23366 3.26592 3.71547 4.17217 4.33984 4.42064 5.33636 5.41110 5.49072 5.58137 5.65394 5.71787 5.88445 6.03097 6.15755 6.38713 6.59597 6.80368 6.99895 7.18030 7.41945 7.56570 8.19775 8.50543 8.87666 9.14119 10.24807 10.64706 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.040186 B = 0.014396 C = 0.010902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.591255 B = 1944.484180 C = 2567.720277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.378 5.378 3 N -0.135 5.135 4 N -0.231 5.231 5 C 0.158 3.842 6 C -0.447 4.447 7 H 0.085 0.915 8 C 0.071 3.929 9 N -0.777 5.777 10 Si 0.905 3.095 11 H -0.273 1.273 12 H -0.280 1.280 13 H -0.265 1.265 14 C -0.093 4.093 15 C -0.046 4.046 16 C -0.155 4.155 17 C -0.190 4.190 18 H 0.059 0.941 19 H 0.076 0.924 20 H 0.071 0.929 21 H 0.271 0.729 22 H 0.097 0.903 23 H 0.105 0.895 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.832 -6.583 -0.760 9.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.174 5.174 3 N -0.111 5.111 4 N -0.103 5.103 5 C 0.028 3.972 6 C -0.484 4.484 7 H 0.103 0.897 8 C -0.147 4.147 9 N -0.404 5.404 10 Si 0.731 3.269 11 H -0.199 1.199 12 H -0.206 1.206 13 H -0.189 1.189 14 C -0.224 4.224 15 C -0.066 4.066 16 C -0.193 4.193 17 C -0.228 4.228 18 H 0.078 0.922 19 H 0.095 0.905 20 H 0.090 0.910 21 H 0.082 0.918 22 H 0.115 0.885 23 H 0.123 0.877 24 H 0.108 0.892 25 H 0.104 0.896 26 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.654 -4.792 -0.755 8.235 hybrid contribution 0.486 -1.516 0.028 1.592 sum -6.168 -6.308 -0.727 8.853 Atomic orbital electron populations 1.21483 0.77283 1.02813 1.01687 1.49366 1.05869 1.06099 1.56089 1.81489 0.96196 1.07764 1.25639 1.75092 1.07419 1.12240 1.15570 1.18974 0.91034 0.88039 0.99144 1.18609 0.87957 0.93508 1.48276 0.89692 1.25814 1.00350 0.94968 0.93617 1.70027 1.25365 1.09138 1.35866 0.86371 0.81224 0.80547 0.78783 1.19856 1.20579 1.18884 1.20537 0.91209 0.87519 1.23124 1.19735 1.03718 0.89706 0.93480 1.22869 0.95059 0.98484 1.02843 1.22965 0.95195 1.03543 1.01049 0.92249 0.90518 0.91038 0.91831 0.88532 0.87702 0.89240 0.89556 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.80 11.28 59.84 0.68 2.47 15 2 N -0.38 -8.69 4.03 -62.90 -0.25 -8.94 15 3 N -0.13 -3.65 13.74 60.35 0.83 -2.83 15 4 N -0.23 -6.94 10.56 32.05 0.34 -6.60 15 5 C 0.16 4.47 6.71 -85.01 -0.57 3.90 15 6 C -0.45 -12.31 8.58 -37.78 -0.32 -12.63 15 7 H 0.09 2.16 6.48 -52.49 -0.34 1.82 15 8 C 0.07 1.92 5.49 -17.35 -0.10 1.83 15 9 N -0.78 -22.43 11.92 55.54 0.66 -21.77 15 10 Si 0.91 19.80 29.56 -169.99 -5.02 14.78 15 11 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15 13 H -0.26 -5.61 7.11 56.52 0.40 -5.21 15 14 C -0.09 -2.22 6.55 -80.90 -0.53 -2.75 15 15 C -0.05 -0.87 5.65 -91.77 -0.52 -1.39 15 16 C -0.15 -2.67 8.86 -26.73 -0.24 -2.91 15 17 C -0.19 -2.96 10.23 -26.73 -0.27 -3.24 15 18 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 19 H 0.08 1.12 8.14 -51.93 -0.42 0.69 15 20 H 0.07 0.99 8.00 -51.93 -0.42 0.57 15 21 H 0.27 7.18 8.30 -40.82 -0.34 6.84 15 22 H 0.10 1.69 8.14 -51.93 -0.42 1.27 15 23 H 0.10 2.05 7.58 -51.93 -0.39 1.65 15 24 H 0.09 1.31 8.14 -51.93 -0.42 0.89 15 25 H 0.09 1.10 8.14 -51.93 -0.42 0.68 15 26 H 0.09 1.41 8.14 -51.93 -0.42 0.99 15 LS Contribution 233.70 15.07 3.52 3.52 Total: -1.00 -32.45 233.70 -4.62 -37.07 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -2.82 Total: -0.51 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -1.87 Total: -14.71 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 1.58 Total: -40.14 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -32.45 -4.62 -37.07 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544495.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.689 kcal (2) G-P(sol) polarization free energy of solvation -32.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds