Wall clock time and date at job start Mon Mar 30 2020 02:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39872 * 125.89613 * 2 1 4 4 C 1.35314 * 107.91954 * 180.14407 * 3 2 1 5 5 C 1.50703 * 126.12759 * 179.90471 * 4 3 2 6 6 N 1.34949 * 107.74826 * 359.63758 * 4 3 2 7 7 C 1.46492 * 126.04227 * 180.20931 * 6 4 3 8 8 C 1.53001 * 109.47510 * 89.99746 * 7 6 4 9 9 C 1.50697 * 109.47706 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99325 * 0.02562 * 9 8 7 11 11 C 1.37871 * 120.00351 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99841 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00233 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46899 * 89.99801 * 13 11 9 15 15 H 1.48498 * 109.47321 * 209.99825 * 13 11 9 16 16 H 1.48495 * 109.47035 * 330.00209 * 13 11 9 17 17 N 1.30835 * 125.89924 * 179.73974 * 2 1 3 18 18 H 1.08996 * 109.47154 * 270.23207 * 1 2 3 19 19 H 1.09001 * 109.47360 * 30.23828 * 1 2 3 20 20 H 1.08999 * 109.46997 * 150.23794 * 1 2 3 21 21 H 1.08000 * 126.03890 * 0.02562 * 3 2 1 22 22 H 1.09002 * 109.47152 * 269.68517 * 5 4 3 23 23 H 1.09001 * 109.46980 * 149.68618 * 5 4 3 24 24 H 1.09004 * 109.47113 * 29.68598 * 5 4 3 25 25 H 1.09001 * 109.47504 * 210.00369 * 7 6 4 26 26 H 1.09010 * 109.47188 * 330.00050 * 7 6 4 27 27 H 1.09001 * 109.47246 * 300.00781 * 8 7 6 28 28 H 1.09010 * 109.46647 * 59.99972 * 8 7 6 29 29 H 0.97002 * 120.00269 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 -0.0032 5 6 4.8350 1.5991 -0.0064 6 7 3.6088 -0.6340 0.0029 7 6 4.7899 -1.5006 0.0065 8 6 5.2017 -1.7958 1.4502 9 6 6.4171 -2.6867 1.4539 10 1 6.8525 -3.0098 0.5198 11 6 6.9731 -3.0894 2.6495 12 7 6.4430 -2.6956 3.7868 13 14 8.4791 -4.1944 2.6541 14 1 9.7064 -3.3584 2.6503 15 1 8.4643 -5.0464 3.8702 16 1 8.4640 -5.0568 1.4453 17 7 2.2742 -1.0598 0.0048 18 1 -0.3633 0.0042 1.0276 19 1 -0.3634 0.8878 -0.5175 20 1 -0.3633 -0.8921 -0.5101 21 1 1.9922 2.1598 0.0004 22 1 5.1300 1.8074 -1.0349 23 1 5.6508 1.0934 0.5102 24 1 4.6072 2.5354 0.5030 25 1 4.5563 -2.4354 -0.5031 26 1 5.6093 -1.0003 -0.5100 27 1 5.4354 -0.8610 1.9597 28 1 4.3824 -2.2961 1.9666 29 1 6.8339 -2.9791 4.6281 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019482218.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:09 Heat of formation + Delta-G solvation = 51.753996 kcal Electronic energy + Delta-G solvation = -11780.332693 eV Core-core repulsion = 9704.424565 eV Total energy + Delta-G solvation = -2075.908128 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.69678 -34.56213 -32.83107 -31.58634 -30.08498 -27.43641 -26.52447 -24.34705 -21.35564 -19.82504 -18.67916 -16.66415 -15.54858 -14.88536 -14.39113 -13.98981 -13.39743 -13.04075 -12.73924 -12.57987 -12.44096 -12.15079 -12.01417 -11.49099 -11.22275 -11.02456 -10.72484 -10.21525 -9.91743 -9.90254 -9.34557 -8.48075 -8.44029 -7.89117 -6.11735 -4.17413 2.46088 3.18190 3.24184 3.25767 3.32803 3.36230 4.37062 5.07454 5.07690 5.24327 5.44174 5.65251 5.76155 5.78764 5.84820 6.00159 6.09531 6.16028 6.21818 6.33634 6.52655 6.69863 7.19886 7.45619 7.54413 7.67270 7.89133 8.20350 8.36342 8.88456 9.47640 10.99449 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.057602 B = 0.008011 C = 0.007593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.979685 B = 3494.387688 C = 3686.537040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.052 3.948 3 C -0.291 4.291 4 C 0.086 3.914 5 C -0.093 4.093 6 N -0.348 5.348 7 C 0.129 3.871 8 C 0.013 3.987 9 C -0.528 4.528 10 H 0.060 0.940 11 C 0.061 3.939 12 N -0.890 5.890 13 Si 0.898 3.102 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.272 1.272 17 N -0.297 5.297 18 H 0.071 0.929 19 H 0.070 0.930 20 H 0.067 0.933 21 H 0.137 0.863 22 H 0.073 0.927 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.021 0.979 28 H 0.026 0.974 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.414 7.426 -7.021 11.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.113 4.113 3 C -0.320 4.320 4 C -0.044 4.044 5 C -0.152 4.152 6 N -0.129 5.129 7 C 0.009 3.991 8 C -0.024 4.024 9 C -0.567 4.567 10 H 0.078 0.922 11 C -0.141 4.141 12 N -0.528 5.528 13 Si 0.725 3.275 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.197 1.197 17 N -0.121 5.121 18 H 0.089 0.911 19 H 0.089 0.911 20 H 0.086 0.914 21 H 0.155 0.845 22 H 0.092 0.908 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.040 0.960 28 H 0.044 0.956 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.227 6.025 -6.828 10.500 hybrid contribution 0.871 0.261 0.217 0.935 sum -4.356 6.286 -6.611 10.109 Atomic orbital electron populations 1.20062 0.87472 1.02461 1.02404 1.22172 0.96557 0.91126 1.01439 1.20940 0.91143 0.99154 1.20789 1.21080 0.97030 0.85290 1.01006 1.20445 0.93946 0.98065 1.02701 1.49066 1.05617 1.04246 1.53953 1.22233 0.81173 0.92769 1.02903 1.19451 0.97023 0.97569 0.88404 1.21008 1.12053 1.30848 0.92760 0.92227 1.25003 0.97452 0.96197 0.95460 1.69979 1.40517 1.44863 0.97418 0.86500 0.82746 0.80517 0.77706 1.20510 1.21079 1.19713 1.77275 0.87003 1.22828 1.24986 0.91071 0.91085 0.91442 0.84493 0.90804 0.90240 0.90205 0.89906 0.90090 0.96048 0.95563 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.45 36.01 0.38 -0.48 15 2 C 0.05 0.94 7.22 -82.40 -0.59 0.35 15 3 C -0.29 -4.98 10.65 -40.01 -0.43 -5.40 15 4 C 0.09 1.56 6.93 -82.26 -0.57 0.99 15 5 C -0.09 -1.34 9.90 36.01 0.36 -0.98 15 6 N -0.35 -7.32 3.61 -57.14 -0.21 -7.53 15 7 C 0.13 2.77 6.00 -4.05 -0.02 2.75 15 8 C 0.01 0.35 5.30 -27.88 -0.15 0.20 15 9 C -0.53 -14.61 9.11 -34.44 -0.31 -14.92 15 10 H 0.06 1.56 7.74 -52.48 -0.41 1.16 15 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 15 12 N -0.89 -26.65 13.29 55.43 0.74 -25.91 15 13 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 15 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 15 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 16 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 17 N -0.30 -6.38 12.58 33.67 0.42 -5.96 15 18 H 0.07 0.87 8.14 -51.93 -0.42 0.44 15 19 H 0.07 0.74 8.14 -51.93 -0.42 0.32 15 20 H 0.07 0.84 8.14 -51.93 -0.42 0.42 15 21 H 0.14 1.91 8.06 -52.49 -0.42 1.49 15 22 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 23 H 0.08 1.25 7.72 -51.93 -0.40 0.85 15 24 H 0.08 0.97 8.14 -51.93 -0.42 0.55 15 25 H 0.08 1.77 8.14 -51.93 -0.42 1.34 15 26 H 0.08 1.55 7.66 -51.92 -0.40 1.16 15 27 H 0.02 0.59 8.14 -51.93 -0.42 0.16 15 28 H 0.03 0.77 8.14 -51.92 -0.42 0.34 15 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15 LS Contribution 255.97 15.07 3.86 3.86 Total: -1.00 -31.88 255.97 -5.80 -37.67 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -4.14 Total: -2.51 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -1.44 Total: -15.86 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.95 Total: -39.40 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -31.88 -5.80 -37.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019482218.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.427 kcal (2) G-P(sol) polarization free energy of solvation -31.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds