Wall clock time and date at job start Mon Mar 30 2020 02:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39872 * 125.89613 * 2 1 4 4 C 1.35314 * 107.91954 * 180.14407 * 3 2 1 5 5 C 1.50703 * 126.12759 * 179.90471 * 4 3 2 6 6 N 1.34949 * 107.74826 * 359.63758 * 4 3 2 7 7 C 1.46492 * 126.04227 * 180.20931 * 6 4 3 8 8 C 1.53001 * 109.47510 * 89.99746 * 7 6 4 9 9 C 1.50697 * 109.47706 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99325 * 0.02562 * 9 8 7 11 11 C 1.37871 * 120.00351 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99841 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00233 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46899 * 89.99801 * 13 11 9 15 15 H 1.48498 * 109.47321 * 209.99825 * 13 11 9 16 16 H 1.48495 * 109.47035 * 330.00209 * 13 11 9 17 17 N 1.30835 * 125.89924 * 179.73974 * 2 1 3 18 18 H 1.08996 * 109.47154 * 270.23207 * 1 2 3 19 19 H 1.09001 * 109.47360 * 30.23828 * 1 2 3 20 20 H 1.08999 * 109.46997 * 150.23794 * 1 2 3 21 21 H 1.08000 * 126.03890 * 0.02562 * 3 2 1 22 22 H 1.09002 * 109.47152 * 269.68517 * 5 4 3 23 23 H 1.09001 * 109.46980 * 149.68618 * 5 4 3 24 24 H 1.09004 * 109.47113 * 29.68598 * 5 4 3 25 25 H 1.09001 * 109.47504 * 210.00369 * 7 6 4 26 26 H 1.09010 * 109.47188 * 330.00050 * 7 6 4 27 27 H 1.09001 * 109.47246 * 300.00781 * 8 7 6 28 28 H 1.09010 * 109.46647 * 59.99972 * 8 7 6 29 29 H 0.97002 * 120.00269 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 -0.0032 5 6 4.8350 1.5991 -0.0064 6 7 3.6088 -0.6340 0.0029 7 6 4.7899 -1.5006 0.0065 8 6 5.2017 -1.7958 1.4502 9 6 6.4171 -2.6867 1.4539 10 1 6.8525 -3.0098 0.5198 11 6 6.9731 -3.0894 2.6495 12 7 6.4430 -2.6956 3.7868 13 14 8.4791 -4.1944 2.6541 14 1 9.7064 -3.3584 2.6503 15 1 8.4643 -5.0464 3.8702 16 1 8.4640 -5.0568 1.4453 17 7 2.2742 -1.0598 0.0048 18 1 -0.3633 0.0042 1.0276 19 1 -0.3634 0.8878 -0.5175 20 1 -0.3633 -0.8921 -0.5101 21 1 1.9922 2.1598 0.0004 22 1 5.1300 1.8074 -1.0349 23 1 5.6508 1.0934 0.5102 24 1 4.6072 2.5354 0.5030 25 1 4.5563 -2.4354 -0.5031 26 1 5.6093 -1.0003 -0.5100 27 1 5.4354 -0.8610 1.9597 28 1 4.3824 -2.2961 1.9666 29 1 6.8339 -2.9791 4.6281 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019482218.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:08 Heat of formation + Delta-G solvation = 31.528348 kcal Electronic energy + Delta-G solvation = -11781.209743 eV Core-core repulsion = 9704.424565 eV Total energy + Delta-G solvation = -2076.785178 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.12268 -36.36646 -34.63226 -33.07821 -31.64451 -29.01520 -27.83600 -26.19306 -23.25085 -21.22995 -20.12862 -18.70157 -17.15807 -16.70648 -16.01951 -15.60203 -14.72918 -14.41050 -14.19905 -14.09262 -13.88910 -13.62413 -13.21920 -13.03951 -12.87033 -12.64729 -12.51035 -12.09884 -11.83785 -11.46262 -11.35551 -10.65145 -9.93886 -9.33639 -8.27962 -6.42681 1.02377 1.39563 1.41779 1.52955 1.72321 1.90745 2.38067 3.06248 3.71094 3.82783 4.14745 4.35057 4.39150 4.58171 4.62063 4.73295 4.80853 4.85669 4.97126 5.01632 5.09298 5.31493 5.34867 5.46327 5.66042 5.89683 6.01310 6.28164 6.73025 6.92875 7.28377 8.84560 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.057602 B = 0.008011 C = 0.007593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.979685 B = 3494.387688 C = 3686.537040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.050 3.950 3 C -0.293 4.293 4 C 0.073 3.927 5 C -0.090 4.090 6 N -0.374 5.374 7 C 0.145 3.855 8 C 0.027 3.973 9 C -0.545 4.545 10 H 0.074 0.926 11 C 0.002 3.998 12 N -0.934 5.934 13 Si 0.975 3.025 14 H -0.267 1.267 15 H -0.285 1.285 16 H -0.260 1.260 17 N -0.353 5.353 18 H 0.081 0.919 19 H 0.103 0.897 20 H 0.069 0.931 21 H 0.173 0.827 22 H 0.100 0.900 23 H 0.059 0.941 24 H 0.105 0.895 25 H 0.079 0.921 26 H 0.106 0.894 27 H -0.003 1.003 28 H -0.021 1.021 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.065 8.367 -8.148 12.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.115 4.115 3 C -0.322 4.322 4 C -0.055 4.055 5 C -0.148 4.148 6 N -0.156 5.156 7 C 0.025 3.975 8 C -0.011 4.011 9 C -0.583 4.583 10 H 0.092 0.908 11 C -0.196 4.196 12 N -0.573 5.573 13 Si 0.798 3.202 14 H -0.192 1.192 15 H -0.210 1.210 16 H -0.184 1.184 17 N -0.176 5.176 18 H 0.099 0.901 19 H 0.122 0.878 20 H 0.088 0.912 21 H 0.190 0.810 22 H 0.119 0.881 23 H 0.078 0.922 24 H 0.123 0.877 25 H 0.097 0.903 26 H 0.124 0.876 27 H 0.016 0.984 28 H -0.002 1.002 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.889 6.984 -7.976 11.674 hybrid contribution 0.655 0.052 0.578 0.875 sum -4.234 7.036 -7.397 11.052 Atomic orbital electron populations 1.20254 0.84196 1.04215 1.03555 1.23062 0.98673 0.90730 0.99019 1.21432 0.90483 1.00561 1.19706 1.21874 0.99115 0.84578 0.99945 1.20570 0.91714 0.98019 1.04496 1.48990 1.05265 1.05223 1.56125 1.21849 0.82609 0.93559 0.99530 1.19209 0.95259 0.95676 0.90988 1.21464 1.12414 1.30934 0.93532 0.90776 1.26044 1.00927 0.97715 0.94914 1.70131 1.42464 1.46441 0.98255 0.85299 0.78498 0.78391 0.77971 1.19189 1.21033 1.18383 1.77220 0.87683 1.25093 1.27621 0.90074 0.87805 0.91229 0.80960 0.88118 0.92152 0.87679 0.90284 0.87607 0.98440 1.00218 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.53 10.45 71.24 0.74 -0.79 15 2 C 0.05 1.77 7.22 43.10 0.31 2.08 15 3 C -0.29 -9.41 10.65 21.99 0.23 -9.18 15 4 C 0.07 2.59 6.93 41.41 0.29 2.88 15 5 C -0.09 -2.41 9.90 71.24 0.71 -1.70 15 6 N -0.37 -15.93 3.61 -334.70 -1.21 -17.14 15 7 C 0.14 6.35 6.00 86.38 0.52 6.87 15 8 C 0.03 1.46 5.30 29.85 0.16 1.61 15 9 C -0.55 -30.57 9.11 25.60 0.23 -30.34 15 10 H 0.07 3.85 7.74 -2.91 -0.02 3.82 15 11 C 0.00 0.14 5.46 84.65 0.46 0.60 15 12 N -0.93 -57.32 13.29 21.45 0.28 -57.04 15 13 Si 0.97 43.50 29.54 68.60 2.03 45.53 15 14 H -0.27 -11.32 7.11 99.48 0.71 -10.62 15 15 H -0.28 -12.59 7.11 99.48 0.71 -11.88 15 16 H -0.26 -10.98 7.11 99.48 0.71 -10.28 15 17 N -0.35 -15.35 12.58 -47.38 -0.60 -15.94 15 18 H 0.08 1.81 8.14 -2.39 -0.02 1.79 15 19 H 0.10 1.80 8.14 -2.39 -0.02 1.78 15 20 H 0.07 1.64 8.14 -2.39 -0.02 1.62 15 21 H 0.17 4.15 8.06 -2.91 -0.02 4.13 15 22 H 0.10 2.15 8.14 -2.39 -0.02 2.13 15 23 H 0.06 1.85 7.72 -2.39 -0.02 1.84 15 24 H 0.10 2.26 8.14 -2.38 -0.02 2.24 15 25 H 0.08 3.46 8.14 -2.39 -0.02 3.44 15 26 H 0.11 4.02 7.66 -2.38 -0.02 4.01 15 27 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 15 28 H -0.02 -1.30 8.14 -2.38 -0.02 -1.32 15 29 H 0.27 15.26 8.31 -92.71 -0.77 14.49 15 Total: -1.00 -70.83 255.97 5.27 -65.56 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 1.11 Total: 7.00 kcal Atomic # 6 Polarization: -31.61 SS G_CDS: 3.65 Total: -27.96 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -1.52 Total: -90.12 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -70.83 5.27 -65.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019482218.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.089 kcal (2) G-P(sol) polarization free energy of solvation -70.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds