Wall clock time and date at job start Mon Mar 30 2020 02:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 110.99930 * 2 1 4 4 C 1.46904 * 110.99913 * 123.94957 * 2 1 3 5 5 C 1.50698 * 109.47371 * 170.00562 * 4 2 1 6 6 C 1.34326 * 126.75168 * 260.29342 * 5 4 2 7 7 N 1.36653 * 109.38813 * 180.15206 * 6 5 4 8 8 H 0.97001 * 124.79415 * 179.85799 * 7 6 5 9 9 C 1.34916 * 110.41756 * 359.58229 * 7 6 5 10 10 C 1.39271 * 107.92866 * 0.24633 * 9 7 6 11 11 C 1.41337 * 127.11554 * 179.97438 * 10 9 7 12 12 H 1.08007 * 120.00204 * 180.02562 * 11 10 9 13 13 C 1.39681 * 120.00141 * 0.03375 * 11 10 9 14 14 N 1.31055 * 119.99661 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00265 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.46949 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.46988 * 119.99734 * 15 13 11 18 18 H 1.48498 * 109.46869 * 239.99566 * 15 13 11 19 19 H 1.08990 * 109.47691 * 296.04601 * 1 2 3 20 20 H 1.09006 * 109.46703 * 56.05052 * 1 2 3 21 21 H 1.09005 * 109.47131 * 176.04603 * 1 2 3 22 22 H 1.09002 * 109.47294 * 183.94838 * 3 2 1 23 23 H 1.08998 * 109.47069 * 303.95223 * 3 2 1 24 24 H 1.09005 * 109.47178 * 63.94955 * 3 2 1 25 25 H 1.09005 * 109.46822 * 50.00309 * 4 2 1 26 26 H 1.09003 * 109.47411 * 290.00663 * 4 2 1 27 27 H 1.07993 * 125.31191 * 359.97438 * 6 5 4 28 28 H 1.08001 * 126.04084 * 180.22845 * 9 7 6 29 29 H 0.97000 * 119.99597 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 3.4817 -0.9524 0.9731 6 6 4.1083 -2.0477 0.5127 7 7 5.4578 -1.8330 0.5146 8 1 6.1216 -2.4794 0.2274 9 6 5.7364 -0.5927 0.9668 10 6 4.5307 0.0306 1.2791 11 6 4.3527 1.3378 1.7861 12 1 3.3584 1.7075 1.9893 13 6 5.4626 2.1518 2.0241 14 7 6.6690 1.7031 1.7778 15 14 5.2272 3.8798 2.6935 16 1 3.7785 4.1436 2.8844 17 1 5.9297 4.0061 3.9956 18 1 5.7866 4.8635 1.7319 19 1 -0.3634 0.4512 0.9232 20 1 -0.3633 0.5740 -0.8525 21 1 -0.3634 -1.0253 -0.0709 22 1 3.0828 1.3433 -0.0708 23 1 1.5898 1.9163 -0.8524 24 1 1.7043 1.8724 0.9233 25 1 1.5089 -1.7406 1.1757 26 1 1.7974 -0.2247 2.0629 27 1 3.6216 -2.9575 0.1936 28 1 6.7205 -0.1598 1.0689 29 1 7.4398 2.2682 1.9435 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032142167.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:45 Heat of formation + Delta-G solvation = 46.428555 kcal Electronic energy + Delta-G solvation = -12313.441108 eV Core-core repulsion = 10237.302052 eV Total energy + Delta-G solvation = -2076.139056 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.98231 -36.27640 -33.22002 -30.14099 -28.20290 -26.65867 -25.20394 -24.49352 -21.23929 -19.25970 -17.73069 -16.74523 -15.65898 -14.49819 -14.42224 -14.32376 -13.72737 -12.34150 -12.25114 -12.16851 -11.99708 -11.48946 -11.19661 -11.12353 -10.91259 -10.81560 -10.57152 -10.22628 -9.54430 -9.26882 -9.07046 -7.56707 -6.99033 -6.48334 -6.25318 -3.82187 3.16184 3.27256 3.31945 3.84919 4.25220 4.40004 4.97508 5.08730 5.72100 5.83832 5.91317 6.04157 6.23187 6.28290 6.38027 6.51528 6.58792 6.79359 7.25538 7.29156 7.51358 7.72369 7.89430 7.99205 8.13520 8.28293 8.57125 9.03699 9.33238 9.45398 9.51460 10.74271 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.030374 B = 0.015576 C = 0.010826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.626495 B = 1797.174086 C = 2585.667486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.542 5.542 3 C 0.022 3.978 4 C 0.149 3.851 5 C -0.219 4.219 6 C -0.033 4.033 7 N -0.575 5.575 8 H 0.387 0.613 9 C -0.114 4.114 10 C 0.018 3.982 11 C -0.423 4.423 12 H 0.068 0.932 13 C 0.055 3.945 14 N -0.843 5.843 15 Si 0.904 3.096 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.280 1.280 19 H 0.015 0.985 20 H 0.057 0.943 21 H 0.057 0.943 22 H 0.109 0.891 23 H 0.041 0.959 24 H 0.018 0.982 25 H 0.054 0.946 26 H 0.027 0.973 27 H 0.128 0.872 28 H 0.182 0.818 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.162 -2.469 -1.648 5.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.266 5.266 3 C -0.126 4.126 4 C 0.022 3.978 5 C -0.231 4.231 6 C -0.164 4.164 7 N -0.171 5.171 8 H 0.219 0.781 9 C -0.242 4.242 10 C 0.012 3.988 11 C -0.457 4.457 12 H 0.086 0.914 13 C -0.153 4.153 14 N -0.476 5.476 15 Si 0.731 3.269 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.206 1.206 19 H 0.033 0.967 20 H 0.076 0.924 21 H 0.076 0.924 22 H 0.127 0.873 23 H 0.060 0.940 24 H 0.036 0.964 25 H 0.072 0.928 26 H 0.045 0.955 27 H 0.146 0.854 28 H 0.198 0.802 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.694 -2.636 -2.068 5.767 hybrid contribution -0.099 0.964 0.922 1.338 sum -4.793 -1.672 -1.146 5.204 Atomic orbital electron populations 1.22356 0.89823 1.00895 0.99431 1.62174 1.05260 1.14889 1.44277 1.22765 1.04568 0.87361 0.97919 1.20043 0.92183 0.95505 0.90112 1.20124 0.92568 0.96466 1.13915 1.20815 0.83823 0.99815 1.11970 1.41403 1.05647 1.14764 1.55308 0.78077 1.23208 1.01251 0.84735 1.14957 1.18251 0.89001 0.92584 0.98937 1.18860 0.93014 0.96707 1.37148 0.91378 1.25559 0.94906 0.99373 0.95444 1.69537 0.98564 1.36369 1.43143 0.86316 0.78845 0.83067 0.78675 1.19238 1.20702 1.20622 0.96658 0.92405 0.92372 0.87285 0.94019 0.96386 0.92801 0.95490 0.85442 0.80177 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.57 60.06 0.57 0.96 15 2 N -0.54 -10.92 5.01 -252.71 -1.27 -12.19 15 3 C 0.02 0.45 8.10 60.06 0.49 0.94 15 4 C 0.15 3.15 5.41 -4.97 -0.03 3.13 15 5 C -0.22 -5.30 5.40 -102.47 -0.55 -5.86 15 6 C -0.03 -0.73 11.78 -16.78 -0.20 -0.92 15 7 N -0.58 -12.71 5.91 -12.17 -0.07 -12.79 15 8 H 0.39 6.99 8.96 -40.82 -0.37 6.62 15 9 C -0.11 -2.99 10.94 -15.81 -0.17 -3.16 15 10 C 0.02 0.48 5.24 -104.80 -0.55 -0.07 15 11 C -0.42 -11.60 7.35 -37.87 -0.28 -11.88 15 12 H 0.07 1.83 5.87 -52.48 -0.31 1.52 15 13 C 0.06 1.47 5.49 -17.34 -0.10 1.38 15 14 N -0.84 -22.97 10.38 55.54 0.58 -22.39 15 15 Si 0.90 20.39 29.56 -169.99 -5.02 15.36 15 16 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 19 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 15 20 H 0.06 0.84 8.12 -51.93 -0.42 0.42 15 21 H 0.06 0.83 8.12 -51.93 -0.42 0.41 15 22 H 0.11 2.68 4.81 -51.93 -0.25 2.43 15 23 H 0.04 0.77 8.12 -51.93 -0.42 0.35 15 24 H 0.02 0.38 7.19 -51.93 -0.37 0.00 15 25 H 0.05 1.02 8.06 -51.93 -0.42 0.60 15 26 H 0.03 0.60 8.12 -51.93 -0.42 0.18 15 27 H 0.13 2.39 8.06 -52.49 -0.42 1.96 15 28 H 0.18 4.95 5.78 -52.49 -0.30 4.64 15 29 H 0.27 6.75 8.30 -40.82 -0.34 6.41 15 LS Contribution 239.11 15.07 3.60 3.60 Total: -1.00 -29.18 239.11 -6.68 -35.86 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -3.69 Total: 8.04 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -0.81 Total: -15.49 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -0.76 Total: -47.37 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -29.18 -6.68 -35.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032142167.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.286 kcal (2) G-P(sol) polarization free energy of solvation -29.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds