Wall clock time and date at job start Mon Mar 30 2020 02:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 110.99930 * 2 1 4 4 C 1.46904 * 110.99913 * 123.94957 * 2 1 3 5 5 C 1.50698 * 109.47371 * 170.00562 * 4 2 1 6 6 C 1.34326 * 126.75168 * 260.29342 * 5 4 2 7 7 N 1.36653 * 109.38813 * 180.15206 * 6 5 4 8 8 H 0.97001 * 124.79415 * 179.85799 * 7 6 5 9 9 C 1.34916 * 110.41756 * 359.58229 * 7 6 5 10 10 C 1.39271 * 107.92866 * 0.24633 * 9 7 6 11 11 C 1.41337 * 127.11554 * 179.97438 * 10 9 7 12 12 H 1.08007 * 120.00204 * 180.02562 * 11 10 9 13 13 C 1.39681 * 120.00141 * 0.03375 * 11 10 9 14 14 N 1.31055 * 119.99661 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00265 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.46949 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.46988 * 119.99734 * 15 13 11 18 18 H 1.48498 * 109.46869 * 239.99566 * 15 13 11 19 19 H 1.08990 * 109.47691 * 296.04601 * 1 2 3 20 20 H 1.09006 * 109.46703 * 56.05052 * 1 2 3 21 21 H 1.09005 * 109.47131 * 176.04603 * 1 2 3 22 22 H 1.09002 * 109.47294 * 183.94838 * 3 2 1 23 23 H 1.08998 * 109.47069 * 303.95223 * 3 2 1 24 24 H 1.09005 * 109.47178 * 63.94955 * 3 2 1 25 25 H 1.09005 * 109.46822 * 50.00309 * 4 2 1 26 26 H 1.09003 * 109.47411 * 290.00663 * 4 2 1 27 27 H 1.07993 * 125.31191 * 359.97438 * 6 5 4 28 28 H 1.08001 * 126.04084 * 180.22845 * 9 7 6 29 29 H 0.97000 * 119.99597 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 3.4817 -0.9524 0.9731 6 6 4.1083 -2.0477 0.5127 7 7 5.4578 -1.8330 0.5146 8 1 6.1216 -2.4794 0.2274 9 6 5.7364 -0.5927 0.9668 10 6 4.5307 0.0306 1.2791 11 6 4.3527 1.3378 1.7861 12 1 3.3584 1.7075 1.9893 13 6 5.4626 2.1518 2.0241 14 7 6.6690 1.7031 1.7778 15 14 5.2272 3.8798 2.6935 16 1 3.7785 4.1436 2.8844 17 1 5.9297 4.0061 3.9956 18 1 5.7866 4.8635 1.7319 19 1 -0.3634 0.4512 0.9232 20 1 -0.3633 0.5740 -0.8525 21 1 -0.3634 -1.0253 -0.0709 22 1 3.0828 1.3433 -0.0708 23 1 1.5898 1.9163 -0.8524 24 1 1.7043 1.8724 0.9233 25 1 1.5089 -1.7406 1.1757 26 1 1.7974 -0.2247 2.0629 27 1 3.6216 -2.9575 0.1936 28 1 6.7205 -0.1598 1.0689 29 1 7.4398 2.2682 1.9435 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032142167.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:45 Heat of formation + Delta-G solvation = 26.498246 kcal Electronic energy + Delta-G solvation = -12314.305351 eV Core-core repulsion = 10237.302052 eV Total energy + Delta-G solvation = -2077.003299 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.80584 -37.84526 -35.21029 -31.90531 -30.10705 -28.16733 -26.87662 -26.46641 -22.80985 -21.21750 -19.53519 -18.56357 -17.65853 -16.25216 -16.06746 -15.85639 -15.28448 -14.26646 -14.01847 -13.97257 -13.65369 -13.03802 -12.91092 -12.82026 -12.62811 -12.45635 -12.23370 -11.99886 -11.47740 -11.15684 -11.03864 -9.18748 -8.83952 -8.37454 -8.23939 -5.86719 1.36572 1.41908 1.54288 2.08009 2.36408 2.42431 3.28962 3.46636 3.82321 4.40067 4.47063 4.61807 4.70539 4.74491 4.89310 4.95604 5.05065 5.07163 5.42034 5.49468 5.51633 5.90493 6.14880 6.26447 6.32629 6.48972 6.66219 7.08128 7.35662 7.50860 7.66105 8.75992 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.030374 B = 0.015576 C = 0.010826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.626495 B = 1797.174086 C = 2585.667486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.551 5.551 3 C 0.031 3.969 4 C 0.154 3.846 5 C -0.245 4.245 6 C -0.015 4.015 7 N -0.566 5.566 8 H 0.407 0.593 9 C -0.139 4.139 10 C -0.018 4.018 11 C -0.442 4.442 12 H 0.062 0.938 13 C 0.008 3.992 14 N -0.870 5.870 15 Si 0.970 3.030 16 H -0.266 1.266 17 H -0.276 1.276 18 H -0.274 1.274 19 H 0.018 0.982 20 H 0.074 0.926 21 H 0.079 0.921 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.008 0.992 25 H 0.082 0.918 26 H 0.008 0.992 27 H 0.171 0.829 28 H 0.164 0.836 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.591 -3.037 -2.078 7.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.275 5.275 3 C -0.117 4.117 4 C 0.027 3.973 5 C -0.256 4.256 6 C -0.147 4.147 7 N -0.164 5.164 8 H 0.242 0.758 9 C -0.268 4.268 10 C -0.024 4.024 11 C -0.477 4.477 12 H 0.080 0.920 13 C -0.197 4.197 14 N -0.503 5.503 15 Si 0.794 3.206 16 H -0.190 1.190 17 H -0.201 1.201 18 H -0.199 1.199 19 H 0.037 0.963 20 H 0.092 0.908 21 H 0.098 0.902 22 H 0.089 0.911 23 H 0.082 0.918 24 H 0.027 0.973 25 H 0.100 0.900 26 H 0.026 0.974 27 H 0.188 0.812 28 H 0.180 0.820 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.118 -3.230 -2.511 7.360 hybrid contribution 0.310 1.049 1.007 1.486 sum -5.809 -2.181 -1.505 6.385 Atomic orbital electron populations 1.22451 0.86922 1.02715 1.00324 1.62127 1.07869 1.13908 1.43626 1.22540 1.02334 0.88487 0.98371 1.20006 0.90840 0.96779 0.89698 1.20530 0.93911 0.96458 1.14707 1.21426 0.83471 1.00464 1.09329 1.41307 1.06504 1.13930 1.54639 0.75786 1.22965 1.00511 0.86613 1.16673 1.18696 0.90620 0.93434 0.99631 1.19035 0.93042 0.97614 1.37970 0.91973 1.26358 0.94577 1.03102 0.95700 1.69651 0.99156 1.37667 1.43863 0.85307 0.78766 0.78403 0.78104 1.18966 1.20129 1.19942 0.96338 0.90763 0.90235 0.91097 0.91811 0.97335 0.89991 0.97375 0.81166 0.81963 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 9.57 127.69 1.22 1.91 15 2 N -0.55 -21.15 5.01 -953.45 -4.78 -25.93 15 3 C 0.03 1.28 8.10 127.69 1.03 2.32 15 4 C 0.15 6.30 5.41 85.56 0.46 6.76 15 5 C -0.25 -11.66 5.40 -18.47 -0.10 -11.76 15 6 C -0.01 -0.62 11.78 83.05 0.98 0.35 15 7 N -0.57 -24.44 5.91 -192.40 -1.14 -25.58 15 8 H 0.41 14.05 8.96 -92.71 -0.83 13.22 15 9 C -0.14 -7.44 10.94 84.47 0.92 -6.52 15 10 C -0.02 -0.99 5.24 -19.98 -0.10 -1.10 15 11 C -0.44 -24.92 7.35 23.38 0.17 -24.75 15 12 H 0.06 3.45 5.87 -2.91 -0.02 3.43 15 13 C 0.01 0.41 5.49 85.16 0.47 0.88 15 14 N -0.87 -48.65 10.38 21.79 0.23 -48.43 15 15 Si 0.97 42.51 29.56 68.60 2.03 44.53 15 16 H -0.27 -11.38 7.11 99.48 0.71 -10.67 15 17 H -0.28 -11.75 7.11 99.48 0.71 -11.04 15 18 H -0.27 -11.62 7.11 99.48 0.71 -10.92 15 19 H 0.02 0.52 8.14 -2.39 -0.02 0.50 15 20 H 0.07 1.90 8.12 -2.38 -0.02 1.88 15 21 H 0.08 1.96 8.12 -2.38 -0.02 1.94 15 22 H 0.07 3.54 4.81 -2.39 -0.01 3.53 15 23 H 0.06 2.29 8.12 -2.39 -0.02 2.27 15 24 H 0.01 0.35 7.19 -2.38 -0.02 0.33 15 25 H 0.08 2.84 8.06 -2.38 -0.02 2.82 15 26 H 0.01 0.36 8.12 -2.39 -0.02 0.34 15 27 H 0.17 5.60 8.06 -2.91 -0.02 5.58 15 28 H 0.16 9.24 5.78 -2.91 -0.02 9.23 15 29 H 0.27 13.98 8.30 -92.71 -0.77 13.22 15 Total: -1.00 -63.37 239.11 1.71 -61.65 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 0.32 Total: 25.64 kcal Atomic # 6 Polarization: -36.95 SS G_CDS: 5.06 Total: -31.90 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -5.69 Total: -99.93 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -63.37 1.71 -61.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032142167.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.153 kcal (2) G-P(sol) polarization free energy of solvation -63.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds