Wall clock time and date at job start Mon Mar 30 2020 01:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20759 * 120.00521 * 2 1 4 4 C 1.50700 * 119.99877 * 180.02562 * 2 1 3 5 5 H 1.08997 * 109.81225 * 330.51954 * 4 2 1 6 6 C 1.53388 * 109.64636 * 91.05420 * 4 2 1 7 7 C 1.53028 * 108.43775 * 187.12011 * 6 4 2 8 8 C 1.50068 * 110.14597 * 310.55961 * 7 6 4 9 9 C 1.29432 * 124.07498 * 17.13655 * 8 7 6 10 10 C 1.50066 * 124.08039 * 359.52757 * 9 8 7 11 11 H 1.09008 * 109.24661 * 256.99665 * 10 9 8 12 12 C 1.50696 * 109.36374 * 137.33977 * 10 9 8 13 13 H 1.07997 * 120.00012 * 239.31242 * 12 10 9 14 14 C 1.37877 * 119.99842 * 59.30768 * 12 10 9 15 15 N 1.31516 * 120.00069 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99806 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46845 * 90.00621 * 16 14 12 18 18 H 1.48503 * 109.47399 * 210.00111 * 16 14 12 19 19 H 1.48498 * 109.47295 * 330.00717 * 16 14 12 20 20 H 1.08994 * 109.47034 * 240.00090 * 1 2 3 21 21 H 1.09002 * 109.46634 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47208 * 119.99784 * 1 2 3 23 23 H 1.09004 * 109.64027 * 306.80330 * 6 4 2 24 24 H 1.08997 * 109.64609 * 67.43563 * 6 4 2 25 25 H 1.09002 * 109.35623 * 70.77272 * 7 6 4 26 26 H 1.09008 * 109.35762 * 190.49250 * 7 6 4 27 27 H 1.08004 * 117.95797 * 197.15445 * 8 7 6 28 28 H 1.08001 * 117.96560 * 179.54930 * 9 8 7 29 29 H 0.97000 * 119.99838 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2604 -1.3051 -0.0006 5 1 1.6721 -2.0716 0.5037 6 6 2.5413 -1.7378 -1.4451 7 6 3.1447 -3.1439 -1.4205 8 6 4.2735 -3.2047 -0.4336 9 6 4.4683 -2.3298 0.5002 10 6 3.5986 -1.1269 0.7201 11 1 4.1034 -0.2425 0.3312 12 6 3.3515 -0.9522 2.1964 13 1 2.3422 -0.9670 2.5804 14 6 4.4139 -0.7735 3.0568 15 7 5.6430 -0.7550 2.5891 16 14 4.1077 -0.5577 4.8868 17 1 4.1154 -1.8863 5.5500 18 1 5.1758 0.2930 5.4706 19 1 2.7885 0.0917 5.0948 20 1 -0.3633 -0.5138 0.8899 21 1 -0.3633 1.0277 0.0005 22 1 -0.3633 -0.5138 -0.8900 23 1 1.6103 -1.7485 -2.0120 24 1 3.2459 -1.0448 -1.9048 25 1 2.3760 -3.8620 -1.1351 26 1 3.5212 -3.3929 -2.4128 27 1 4.9667 -4.0297 -0.5073 28 1 5.3094 -2.4743 1.1621 29 1 5.8020 -0.8675 1.6388 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039071438.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:56 Heat of formation + Delta-G solvation = -41.274463 kcal Electronic energy + Delta-G solvation = -12420.994163 eV Core-core repulsion = 10308.759268 eV Total energy + Delta-G solvation = -2112.234896 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.105 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.29281 -36.88369 -33.20787 -31.10774 -29.30017 -29.04059 -24.78326 -22.42379 -21.65459 -18.79924 -17.13452 -17.04741 -15.50918 -14.49124 -14.29925 -13.90951 -13.74149 -13.17578 -13.11387 -12.25499 -11.91881 -11.75168 -11.55994 -11.53028 -10.84045 -10.77644 -10.49895 -10.16601 -10.04812 -9.60975 -8.74282 -8.65954 -8.34689 -7.81936 -6.32147 -4.06818 2.73193 3.36268 3.42990 3.48724 3.62718 4.53634 4.72750 5.38413 5.40847 5.44322 5.50087 5.63627 5.74016 5.93079 6.09991 6.15002 6.25517 6.29204 6.36035 6.45345 6.62365 6.66157 7.22194 7.52000 7.69655 7.82583 8.20647 8.30577 8.42648 8.86009 9.63552 11.03159 Molecular weight = 194.10amu Principal moments of inertia in cm(-1) A = 0.031600 B = 0.015461 C = 0.011606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.861586 B = 1810.557340 C = 2411.980756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.366 3.634 3 O -0.453 6.453 4 C -0.120 4.120 5 H 0.085 0.915 6 C -0.106 4.106 7 C -0.070 4.070 8 C -0.233 4.233 9 C -0.093 4.093 10 C 0.063 3.937 11 H 0.042 0.958 12 C -0.587 4.587 13 H 0.049 0.951 14 C 0.021 3.979 15 N -0.913 5.913 16 Si 1.069 2.931 17 H -0.288 1.288 18 H -0.284 1.284 19 H -0.289 1.289 20 H 0.088 0.912 21 H 0.072 0.928 22 H 0.083 0.917 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.109 0.891 29 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.902 -3.334 -5.717 10.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.241 3.759 3 O -0.326 6.326 4 C -0.139 4.139 5 H 0.103 0.897 6 C -0.144 4.144 7 C -0.107 4.107 8 C -0.251 4.251 9 C -0.111 4.111 10 C 0.045 3.955 11 H 0.060 0.940 12 C -0.625 4.625 13 H 0.067 0.933 14 C -0.183 4.183 15 N -0.550 5.550 16 Si 0.897 3.103 17 H -0.215 1.215 18 H -0.209 1.209 19 H -0.215 1.215 20 H 0.106 0.894 21 H 0.092 0.908 22 H 0.102 0.898 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.103 0.897 28 H 0.127 0.873 29 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.812 -2.526 -4.260 8.422 hybrid contribution -0.811 -0.503 -1.322 1.631 sum -7.623 -3.029 -5.583 9.922 Atomic orbital electron populations 1.22345 0.96042 1.03870 1.03782 1.24439 0.90894 0.90756 0.69826 1.90338 1.72014 1.35118 1.35103 1.21734 0.99929 0.95794 0.96471 0.89679 1.21519 0.99944 0.97497 0.95415 1.20216 0.96663 0.96016 0.97851 1.21686 1.01216 1.01825 1.00411 1.22883 0.98366 0.96136 0.93746 1.17822 0.88945 0.92707 0.96067 0.93991 1.21850 0.95095 1.54185 0.91379 0.93277 1.25761 0.92853 0.93609 1.06116 1.70776 1.20973 1.45906 1.17357 0.83549 0.75340 0.76749 0.74645 1.21475 1.20923 1.21528 0.89382 0.90847 0.89831 0.92626 0.91893 0.92193 0.92409 0.89740 0.87349 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.95 10.25 36.00 0.37 -2.58 15 2 C 0.37 7.35 5.96 -29.04 -0.17 7.17 15 3 O -0.45 -10.94 16.69 6.00 0.10 -10.84 15 4 C -0.12 -2.47 1.89 -91.56 -0.17 -2.64 15 5 H 0.08 1.69 8.08 -51.93 -0.42 1.27 15 6 C -0.11 -1.84 5.29 -26.52 -0.14 -1.98 15 7 C -0.07 -1.18 6.12 -28.17 -0.17 -1.35 15 8 C -0.23 -4.71 9.80 -35.90 -0.35 -5.06 15 9 C -0.09 -2.22 8.04 -35.90 -0.29 -2.51 15 10 C 0.06 1.59 1.34 -93.22 -0.13 1.46 15 11 H 0.04 1.21 7.33 -51.92 -0.38 0.83 15 12 C -0.59 -16.47 8.15 -34.44 -0.28 -16.75 15 13 H 0.05 1.36 7.74 -52.49 -0.41 0.95 15 14 C 0.02 0.60 5.26 -17.82 -0.09 0.50 15 15 N -0.91 -27.59 12.89 55.43 0.71 -26.88 15 16 Si 1.07 25.53 29.90 -169.99 -5.08 20.44 15 17 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 19 H -0.29 -6.63 7.11 56.52 0.40 -6.22 15 20 H 0.09 1.18 8.14 -51.93 -0.42 0.76 15 21 H 0.07 1.02 8.12 -51.93 -0.42 0.60 15 22 H 0.08 0.96 8.14 -51.93 -0.42 0.54 15 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 24 H 0.06 1.16 8.12 -51.93 -0.42 0.74 15 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 15 26 H 0.06 0.84 8.14 -51.92 -0.42 0.42 15 27 H 0.08 1.58 8.06 -52.48 -0.42 1.16 15 28 H 0.11 2.85 5.99 -52.49 -0.31 2.54 15 29 H 0.27 8.22 5.56 -40.82 -0.23 8.00 15 LS Contribution 242.59 15.07 3.66 3.66 Total: -1.00 -31.51 242.59 -5.97 -37.47 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -3.92 Total: -0.13 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: -1.43 Total: -23.73 kcal Atomic # 7 Polarization: -27.59 SS G_CDS: 0.71 Total: -26.88 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.10 Total: -10.84 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -5.08 Total: 20.44 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -31.51 -5.97 -37.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039071438.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.804 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds