Wall clock time and date at job start Mon Mar 30 2020 02:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47050 * 2 1 4 4 C 1.52998 * 109.47075 * 240.00089 * 2 1 3 5 5 C 1.50695 * 109.47297 * 120.00218 * 2 1 3 6 6 C 1.36216 * 125.69304 * 74.96766 * 5 2 1 7 7 N 1.36413 * 107.19609 * 180.02562 * 6 5 2 8 8 H 0.97006 * 126.55715 * 179.97438 * 7 6 5 9 9 C 1.37542 * 106.88917 * 0.02562 * 7 6 5 10 10 C 1.40000 * 125.96358 * 180.02562 * 9 7 6 11 11 H 1.07997 * 120.00021 * 354.24895 * 10 9 7 12 12 C 1.40240 * 119.99818 * 174.24537 * 10 9 7 13 13 N 1.30687 * 120.00044 * 6.06667 * 12 10 9 14 14 Si 1.86800 * 119.99922 * 186.05871 * 12 10 9 15 15 H 1.48500 * 109.46874 * 94.98480 * 14 12 10 16 16 H 1.48496 * 109.47130 * 214.98532 * 14 12 10 17 17 H 1.48503 * 109.47175 * 334.98572 * 14 12 10 18 18 N 1.32764 * 125.69071 * 255.02626 * 5 2 1 19 19 H 1.08998 * 109.46997 * 300.00064 * 1 2 3 20 20 H 1.09003 * 109.47290 * 59.99919 * 1 2 3 21 21 H 1.09004 * 109.47332 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47416 * 180.02562 * 3 2 1 23 23 H 1.09003 * 109.47140 * 300.00173 * 3 2 1 24 24 H 1.08998 * 109.47272 * 60.00105 * 3 2 1 25 25 H 1.08996 * 109.47545 * 300.00233 * 4 2 1 26 26 H 1.09003 * 109.47068 * 59.99856 * 4 2 1 27 27 H 1.09003 * 109.47119 * 179.97438 * 4 2 1 28 28 H 1.07997 * 126.39790 * 0.04686 * 6 5 2 29 29 H 0.96999 * 120.00233 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2304 6 6 2.0268 -2.0582 1.4278 7 7 2.5633 -2.2873 2.6609 8 1 2.6921 -3.1509 3.0836 9 6 2.8858 -1.0597 3.1908 10 6 3.4642 -0.8320 4.4452 11 1 3.6113 -1.6545 5.1294 12 6 3.8526 0.4643 4.8133 13 7 3.5681 1.4768 4.0374 14 14 4.7763 0.7439 6.4127 15 1 6.2366 0.7644 6.1438 16 1 4.3632 2.0426 7.0024 17 1 4.4633 -0.3533 7.3633 18 7 2.5532 -0.1270 2.3032 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 3.1300 1.4426 -0.0005 23 1 1.6766 1.9563 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 1.6767 -1.7488 -1.2493 26 1 1.6766 -0.2074 -2.1392 27 1 3.1300 -0.7208 -1.2495 28 1 1.6654 -2.8056 0.7371 29 1 3.8371 2.3734 4.2918 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039132905.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:10 Heat of formation + Delta-G solvation = 31.680937 kcal Electronic energy + Delta-G solvation = -12269.177400 eV Core-core repulsion = 10192.398839 eV Total energy + Delta-G solvation = -2076.778561 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.83900 -35.79396 -33.18107 -30.17812 -28.32950 -26.61179 -26.45527 -24.59625 -20.83900 -19.91714 -17.37902 -17.21936 -15.49255 -14.61130 -13.67986 -13.57884 -13.21093 -12.67466 -12.60453 -12.36193 -11.64040 -11.34776 -11.16043 -11.12968 -10.91118 -10.54972 -10.23553 -10.14833 -10.01164 -9.83788 -9.14513 -7.99406 -7.68325 -6.89863 -6.32962 -4.19494 3.09276 3.19815 3.22371 3.76841 4.09266 4.72611 4.98070 5.61106 5.63806 5.68442 5.94417 6.20315 6.24630 6.35257 6.39871 6.53685 6.59726 6.70193 6.71869 6.84943 7.14509 7.24583 7.34542 7.48006 7.75151 8.11841 8.35971 8.68577 9.06485 9.51624 10.34650 10.60821 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.054143 B = 0.011098 C = 0.009833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.020689 B = 2522.474910 C = 2846.834187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.018 3.982 3 C -0.117 4.117 4 C -0.130 4.130 5 C 0.025 3.975 6 C -0.174 4.174 7 N -0.624 5.624 8 H 0.392 0.608 9 C 0.371 3.629 10 C -0.469 4.469 11 H 0.075 0.925 12 C 0.084 3.916 13 N -0.743 5.743 14 Si 0.908 3.092 15 H -0.273 1.273 16 H -0.279 1.279 17 H -0.266 1.266 18 N -0.504 5.504 19 H 0.053 0.947 20 H 0.044 0.956 21 H 0.047 0.953 22 H 0.050 0.950 23 H 0.031 0.969 24 H 0.064 0.936 25 H 0.048 0.952 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.132 0.868 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.964 -2.144 -4.256 5.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.017 3.983 3 C -0.175 4.175 4 C -0.188 4.188 5 C -0.109 4.109 6 C -0.305 4.305 7 N -0.231 5.231 8 H 0.226 0.774 9 C 0.126 3.874 10 C -0.509 4.509 11 H 0.093 0.907 12 C -0.139 4.139 13 N -0.368 5.368 14 Si 0.733 3.267 15 H -0.199 1.199 16 H -0.204 1.204 17 H -0.190 1.190 18 N -0.226 5.226 19 H 0.072 0.928 20 H 0.063 0.937 21 H 0.066 0.934 22 H 0.070 0.930 23 H 0.050 0.950 24 H 0.083 0.917 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.149 0.851 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.893 -1.027 -4.280 4.791 hybrid contribution 0.385 -1.331 0.821 1.611 sum -1.508 -2.358 -3.459 4.450 Atomic orbital electron populations 1.21799 0.95407 1.00818 1.00631 1.18668 0.93811 0.94847 0.90999 1.21551 1.01029 0.94789 1.00089 1.21819 1.00899 0.99612 0.96462 1.20411 1.04200 0.89913 0.96379 1.21561 1.19783 0.97441 0.91753 1.43372 1.55172 1.08799 1.15749 0.77414 1.20228 0.94982 0.77679 0.94501 1.18067 1.40262 0.94672 0.97912 0.90669 1.25642 0.95081 0.95471 0.97743 1.70019 1.33209 0.99299 1.34236 0.86329 0.79984 0.78381 0.81992 1.19855 1.20384 1.19026 1.71141 1.22212 1.28411 1.00871 0.92808 0.93704 0.93424 0.93035 0.94974 0.91679 0.93281 0.93611 0.93059 0.85056 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 8.46 37.16 0.31 -1.99 15 2 C 0.02 0.36 0.95 -155.66 -0.15 0.21 15 3 C -0.12 -2.39 8.03 37.16 0.30 -2.09 15 4 C -0.13 -2.23 8.19 37.16 0.30 -1.92 15 5 C 0.03 0.63 5.53 -82.92 -0.46 0.17 15 6 C -0.17 -4.04 11.31 -16.24 -0.18 -4.23 15 7 N -0.62 -15.01 6.25 -11.91 -0.07 -15.08 15 8 H 0.39 8.02 8.96 -40.82 -0.37 7.65 15 9 C 0.37 10.42 7.61 -155.60 -1.18 9.24 15 10 C -0.47 -12.94 9.45 -38.17 -0.36 -13.30 15 11 H 0.08 1.92 7.86 -52.49 -0.41 1.51 15 12 C 0.08 2.23 5.49 -17.29 -0.09 2.14 15 13 N -0.74 -20.84 11.92 55.56 0.66 -20.17 15 14 Si 0.91 19.46 29.57 -169.99 -5.03 14.44 15 15 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 16 H -0.28 -5.86 7.11 56.52 0.40 -5.46 15 17 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 18 N -0.50 -14.40 8.74 -8.95 -0.08 -14.48 15 19 H 0.05 1.04 8.14 -51.93 -0.42 0.61 15 20 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 21 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 22 H 0.05 1.12 8.14 -51.93 -0.42 0.70 15 23 H 0.03 0.54 8.14 -51.93 -0.42 0.12 15 24 H 0.06 1.48 8.07 -51.93 -0.42 1.06 15 25 H 0.05 0.79 7.48 -51.93 -0.39 0.40 15 26 H 0.04 0.67 8.14 -51.93 -0.42 0.24 15 27 H 0.05 0.92 8.14 -51.93 -0.42 0.49 15 28 H 0.13 2.64 7.65 -52.49 -0.40 2.23 15 29 H 0.27 6.91 8.29 -40.82 -0.34 6.57 15 LS Contribution 248.12 15.07 3.74 3.74 Total: -1.00 -30.74 248.12 -6.37 -37.11 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -4.08 Total: 6.22 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -1.51 Total: -11.77 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: 0.51 Total: -49.73 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.74 -6.37 -37.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039132905.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.788 kcal (2) G-P(sol) polarization free energy of solvation -30.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds