Wall clock time and date at job start Mon Mar 30 2020 02:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47025 * 2 1 4 4 C 1.50699 * 109.47471 * 120.00043 * 2 1 3 5 5 C 1.35072 * 126.30627 * 324.69185 * 4 2 1 6 6 C 1.42233 * 105.54512 * 179.97438 * 5 4 2 7 7 C 1.41423 * 126.56785 * 180.16021 * 6 5 4 8 8 H 1.08001 * 120.00350 * 354.55712 * 7 6 5 9 9 C 1.39855 * 120.00329 * 174.55772 * 7 6 5 10 10 N 1.30895 * 119.99544 * 6.02570 * 9 7 6 11 11 Si 1.86795 * 120.00577 * 186.02331 * 9 7 6 12 12 H 1.48499 * 109.47183 * 94.97965 * 11 9 7 13 13 H 1.48501 * 109.47438 * 214.98053 * 11 9 7 14 14 H 1.48506 * 109.46902 * 334.97933 * 11 9 7 15 15 N 1.32751 * 106.86352 * 0.34007 * 6 5 4 16 16 N 1.28472 * 109.93137 * 359.79039 * 15 6 5 17 17 C 1.46499 * 124.86301 * 180.02562 * 16 15 6 18 18 H 1.09002 * 109.47302 * 300.00084 * 1 2 3 19 19 H 1.09005 * 109.47534 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.47498 * 59.99991 * 1 2 3 21 21 H 1.09002 * 109.46847 * 240.00196 * 2 1 3 22 22 H 1.08992 * 109.47148 * 59.99820 * 3 2 1 23 23 H 1.09000 * 109.46848 * 180.02562 * 3 2 1 24 24 H 1.09006 * 109.46989 * 300.00321 * 3 2 1 25 25 H 1.08003 * 127.22955 * 359.97438 * 5 4 2 26 26 H 0.97000 * 119.99913 * 180.02562 * 10 9 7 27 27 H 1.09009 * 109.46977 * 269.95482 * 17 16 15 28 28 H 1.09005 * 109.47166 * 29.94993 * 17 16 15 29 29 H 1.09000 * 109.47877 * 149.95151 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.4616 -0.6906 2.4544 6 6 2.2925 -1.5019 3.2757 7 6 2.1002 -1.7875 4.6473 8 1 1.3038 -1.3037 5.1933 9 6 2.9413 -2.6966 5.2970 10 7 3.9772 -3.1933 4.6696 11 14 2.5867 -3.2019 7.0600 12 1 1.8048 -4.4643 7.0653 13 1 3.8673 -3.4098 7.7825 14 1 1.8061 -2.1332 7.7337 15 7 3.2854 -1.9363 2.5090 16 7 3.1470 -1.4832 1.3148 17 6 4.0597 -1.7604 0.2029 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5138 -0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 1.6766 1.9563 0.8899 23 1 3.1300 1.4425 -0.0005 24 1 1.6765 1.9564 -0.8900 25 1 0.5629 -0.1685 2.7480 26 1 4.5604 -3.8241 5.1200 27 1 4.8413 -1.0010 0.1764 28 1 4.5121 -2.7426 0.3404 29 1 3.5052 -1.7440 -0.7353 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041167776.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:50 Heat of formation + Delta-G solvation = 59.359302 kcal Electronic energy + Delta-G solvation = -12162.298842 eV Core-core repulsion = 10086.720505 eV Total energy + Delta-G solvation = -2075.578337 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.42812 -34.98489 -33.33777 -31.44018 -27.84638 -27.16436 -26.76678 -24.01127 -21.64813 -19.63617 -18.44231 -16.33674 -15.48390 -14.59447 -14.44116 -13.90005 -13.24008 -12.89157 -12.53378 -12.42437 -11.89177 -11.60377 -11.45701 -11.27628 -11.01280 -10.75141 -10.71180 -10.42571 -10.14394 -9.68252 -9.03189 -8.23378 -7.30081 -7.14753 -6.16223 -4.00476 3.22738 3.30943 3.35173 3.57234 4.19007 4.31539 4.53769 5.27708 5.34290 5.50308 5.58140 5.79645 5.92631 5.94805 5.97807 6.10072 6.16093 6.21751 6.34042 6.57277 6.62461 6.89686 7.42083 7.52487 7.59148 7.97855 8.49307 8.83143 9.15780 9.41071 10.45633 10.82791 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.055836 B = 0.010342 C = 0.009194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.345482 B = 2706.815937 C = 3044.655383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.018 4.018 3 C -0.137 4.137 4 C -0.011 4.011 5 C -0.283 4.283 6 C 0.189 3.811 7 C -0.451 4.451 8 H 0.076 0.924 9 C 0.072 3.928 10 N -0.786 5.786 11 Si 0.901 3.099 12 H -0.276 1.276 13 H -0.283 1.283 14 H -0.266 1.266 15 N -0.329 5.329 16 N -0.336 5.336 17 C 0.110 3.890 18 H 0.059 0.941 19 H 0.054 0.946 20 H 0.048 0.952 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.049 0.951 24 H 0.049 0.951 25 H 0.119 0.881 26 H 0.265 0.735 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.638 4.300 -7.974 9.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.038 4.038 3 C -0.195 4.195 4 C -0.137 4.137 5 C -0.314 4.314 6 C 0.039 3.961 7 C -0.490 4.490 8 H 0.094 0.906 9 C -0.145 4.145 10 N -0.415 5.415 11 Si 0.727 3.273 12 H -0.201 1.201 13 H -0.208 1.208 14 H -0.190 1.190 15 N -0.160 5.160 16 N -0.120 5.120 17 C -0.033 4.033 18 H 0.078 0.922 19 H 0.073 0.927 20 H 0.067 0.933 21 H 0.080 0.920 22 H 0.077 0.923 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.137 0.863 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.341 3.469 -8.117 8.928 hybrid contribution -0.781 0.167 0.812 1.139 sum -2.121 3.636 -7.304 8.431 Atomic orbital electron populations 1.21740 0.94520 1.01831 1.01174 1.19441 0.95631 0.94769 0.93989 1.21792 1.00742 0.95736 1.01251 1.20896 0.93415 1.02769 0.96598 1.21309 1.04661 1.12106 0.93292 1.19283 0.89426 0.93304 0.94041 1.18507 1.14654 1.23751 0.92108 0.90567 1.25724 0.94266 0.95664 0.98820 1.69994 1.11118 1.23895 1.36506 0.86429 0.78152 0.79325 0.83356 1.20146 1.20824 1.19047 1.74727 1.25595 1.26930 0.88773 1.45364 1.19060 1.38403 1.09161 1.21451 0.92674 1.02171 0.86971 0.92163 0.92675 0.93279 0.91967 0.92282 0.93205 0.93181 0.86288 0.92452 0.92683 0.90393 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.79 37.16 0.33 -1.67 15 2 C -0.02 -0.30 3.10 -91.77 -0.28 -0.59 15 3 C -0.14 -2.02 9.18 37.16 0.34 -1.68 15 4 C -0.01 -0.26 5.85 -81.92 -0.48 -0.74 15 5 C -0.28 -7.17 10.13 -39.17 -0.40 -7.57 15 6 C 0.19 5.58 6.78 -84.72 -0.57 5.01 15 7 C -0.45 -13.35 9.41 -37.77 -0.36 -13.70 15 8 H 0.08 2.13 7.85 -52.49 -0.41 1.72 15 9 C 0.07 2.06 5.49 -17.35 -0.10 1.96 15 10 N -0.79 -23.39 12.00 55.54 0.67 -22.72 15 11 Si 0.90 20.83 29.56 -169.99 -5.03 15.80 15 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 14 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 15 N -0.33 -9.62 10.26 32.34 0.33 -9.29 15 16 N -0.34 -8.15 3.72 -63.71 -0.24 -8.39 15 17 C 0.11 2.00 11.11 59.85 0.67 2.67 15 18 H 0.06 0.91 7.34 -51.93 -0.38 0.53 15 19 H 0.05 0.85 8.14 -51.93 -0.42 0.42 15 20 H 0.05 0.58 8.14 -51.93 -0.42 0.16 15 21 H 0.06 0.94 6.88 -51.93 -0.36 0.59 15 22 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 15 25 H 0.12 2.77 7.46 -52.48 -0.39 2.37 15 26 H 0.26 7.25 8.30 -40.82 -0.34 6.91 15 27 H 0.05 0.91 8.14 -51.92 -0.42 0.48 15 28 H 0.08 1.41 8.14 -51.93 -0.42 0.99 15 29 H 0.07 0.97 6.89 -51.93 -0.36 0.61 15 LS Contribution 248.41 15.07 3.74 3.74 Total: -1.00 -33.47 248.41 -5.37 -38.84 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -3.99 Total: -1.68 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -0.85 Total: -16.30 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.76 Total: -40.40 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.80 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -33.47 -5.37 -38.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041167776.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.198 kcal (2) G-P(sol) polarization free energy of solvation -33.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds