Wall clock time and date at job start Mon Mar 30 2020 02:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47025 * 2 1 4 4 C 1.50699 * 109.47471 * 120.00043 * 2 1 3 5 5 C 1.35072 * 126.30627 * 324.69185 * 4 2 1 6 6 C 1.42233 * 105.54512 * 179.97438 * 5 4 2 7 7 C 1.41423 * 126.56785 * 180.16021 * 6 5 4 8 8 H 1.08001 * 120.00350 * 354.55712 * 7 6 5 9 9 C 1.39855 * 120.00329 * 174.55772 * 7 6 5 10 10 N 1.30895 * 119.99544 * 6.02570 * 9 7 6 11 11 Si 1.86795 * 120.00577 * 186.02331 * 9 7 6 12 12 H 1.48499 * 109.47183 * 94.97965 * 11 9 7 13 13 H 1.48501 * 109.47438 * 214.98053 * 11 9 7 14 14 H 1.48506 * 109.46902 * 334.97933 * 11 9 7 15 15 N 1.32751 * 106.86352 * 0.34007 * 6 5 4 16 16 N 1.28472 * 109.93137 * 359.79039 * 15 6 5 17 17 C 1.46499 * 124.86301 * 180.02562 * 16 15 6 18 18 H 1.09002 * 109.47302 * 300.00084 * 1 2 3 19 19 H 1.09005 * 109.47534 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.47498 * 59.99991 * 1 2 3 21 21 H 1.09002 * 109.46847 * 240.00196 * 2 1 3 22 22 H 1.08992 * 109.47148 * 59.99820 * 3 2 1 23 23 H 1.09000 * 109.46848 * 180.02562 * 3 2 1 24 24 H 1.09006 * 109.46989 * 300.00321 * 3 2 1 25 25 H 1.08003 * 127.22955 * 359.97438 * 5 4 2 26 26 H 0.97000 * 119.99913 * 180.02562 * 10 9 7 27 27 H 1.09009 * 109.46977 * 269.95482 * 17 16 15 28 28 H 1.09005 * 109.47166 * 29.94993 * 17 16 15 29 29 H 1.09000 * 109.47877 * 149.95151 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.4616 -0.6906 2.4544 6 6 2.2925 -1.5019 3.2757 7 6 2.1002 -1.7875 4.6473 8 1 1.3038 -1.3037 5.1933 9 6 2.9413 -2.6966 5.2970 10 7 3.9772 -3.1933 4.6696 11 14 2.5867 -3.2019 7.0600 12 1 1.8048 -4.4643 7.0653 13 1 3.8673 -3.4098 7.7825 14 1 1.8061 -2.1332 7.7337 15 7 3.2854 -1.9363 2.5090 16 7 3.1470 -1.4832 1.3148 17 6 4.0597 -1.7604 0.2029 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5138 -0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 1.6766 1.9563 0.8899 23 1 3.1300 1.4425 -0.0005 24 1 1.6765 1.9564 -0.8900 25 1 0.5629 -0.1685 2.7480 26 1 4.5604 -3.8241 5.1200 27 1 4.8413 -1.0010 0.1764 28 1 4.5121 -2.7426 0.3404 29 1 3.5052 -1.7440 -0.7353 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041167776.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:50 Heat of formation + Delta-G solvation = 37.184219 kcal Electronic energy + Delta-G solvation = -12163.260426 eV Core-core repulsion = 10086.720505 eV Total energy + Delta-G solvation = -2076.539921 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.33250 -36.41729 -35.34348 -33.32083 -29.65675 -29.12208 -27.93209 -25.88688 -23.16178 -21.63782 -20.23387 -18.12816 -17.42227 -16.37338 -16.26064 -15.25503 -14.95856 -14.34595 -14.28317 -13.81671 -13.37140 -13.11337 -12.98728 -12.90969 -12.76711 -12.50804 -12.11754 -12.00682 -11.80345 -11.44148 -11.07694 -10.27239 -9.31870 -9.08071 -8.27089 -6.19607 1.40519 1.41472 1.56614 1.77371 2.34291 2.43742 2.56137 3.64413 3.90217 4.09192 4.12105 4.33437 4.50546 4.61566 4.73650 4.86006 4.95381 4.98801 5.04337 5.13342 5.32704 5.40496 5.45196 5.53774 5.74806 5.95237 6.46677 6.89414 7.04238 7.27047 8.42230 8.74055 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.055836 B = 0.010342 C = 0.009194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.345482 B = 2706.815937 C = 3044.655383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.018 4.018 3 C -0.132 4.132 4 C 0.014 3.986 5 C -0.318 4.318 6 C 0.146 3.854 7 C -0.491 4.491 8 H 0.077 0.923 9 C 0.021 3.979 10 N -0.828 5.828 11 Si 0.985 3.015 12 H -0.268 1.268 13 H -0.273 1.273 14 H -0.257 1.257 15 N -0.372 5.372 16 N -0.346 5.346 17 C 0.100 3.900 18 H 0.049 0.951 19 H 0.043 0.957 20 H 0.087 0.913 21 H 0.088 0.912 22 H 0.044 0.956 23 H 0.043 0.957 24 H 0.089 0.911 25 H 0.128 0.872 26 H 0.270 0.730 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.205 4.981 -9.309 11.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.038 4.038 3 C -0.190 4.190 4 C -0.113 4.113 5 C -0.348 4.348 6 C -0.004 4.004 7 C -0.530 4.530 8 H 0.095 0.905 9 C -0.192 4.192 10 N -0.458 5.458 11 Si 0.807 3.193 12 H -0.193 1.193 13 H -0.198 1.198 14 H -0.181 1.181 15 N -0.205 5.205 16 N -0.130 5.130 17 C -0.041 4.041 18 H 0.068 0.932 19 H 0.062 0.938 20 H 0.106 0.894 21 H 0.106 0.894 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.108 0.892 25 H 0.146 0.854 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.903 4.157 -9.474 10.520 hybrid contribution -0.590 0.011 1.057 1.210 sum -2.493 4.168 -8.417 9.718 Atomic orbital electron populations 1.21731 0.93011 1.01625 1.02616 1.19705 0.96851 0.95473 0.91779 1.21754 1.00376 0.94355 1.02538 1.21676 0.91455 1.00349 0.97801 1.21491 1.05636 1.13327 0.94371 1.19773 0.90844 0.94845 0.94916 1.18909 1.15627 1.25271 0.93147 0.90532 1.26710 0.93548 0.95031 1.03925 1.70127 1.12211 1.24628 1.38796 0.85164 0.78312 0.79065 0.76806 1.19285 1.19831 1.18079 1.74574 1.26516 1.28440 0.90923 1.45840 1.20226 1.37914 1.09037 1.21859 0.93025 1.02494 0.86726 0.93186 0.93756 0.89405 0.89400 0.93690 0.93783 0.89234 0.85420 0.92074 0.90857 0.90964 0.87355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.50 8.79 71.98 0.63 -2.87 15 2 C -0.02 -0.54 3.10 -11.54 -0.04 -0.58 15 3 C -0.13 -3.45 9.18 71.98 0.66 -2.79 15 4 C 0.01 0.62 5.85 41.20 0.24 0.86 15 5 C -0.32 -16.51 10.13 22.53 0.23 -16.28 15 6 C 0.15 8.98 6.78 40.78 0.28 9.26 15 7 C -0.49 -30.22 9.41 23.45 0.22 -29.99 15 8 H 0.08 4.47 7.85 -2.91 -0.02 4.45 15 9 C 0.02 1.22 5.49 85.22 0.47 1.69 15 10 N -0.83 -50.81 12.00 21.81 0.26 -50.55 15 11 Si 0.99 43.71 29.56 68.60 2.03 45.74 15 12 H -0.27 -11.44 7.11 99.48 0.71 -10.73 15 13 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 14 H -0.26 -10.88 7.11 99.48 0.71 -10.17 15 15 N -0.37 -22.42 10.26 -51.61 -0.53 -22.95 15 16 N -0.35 -16.71 3.72 -355.49 -1.32 -18.03 15 17 C 0.10 3.44 11.11 127.77 1.42 4.86 15 18 H 0.05 1.42 7.34 -2.39 -0.02 1.40 15 19 H 0.04 1.26 8.14 -2.38 -0.02 1.24 15 20 H 0.09 1.67 8.14 -2.38 -0.02 1.65 15 21 H 0.09 2.23 6.88 -2.39 -0.02 2.22 15 22 H 0.04 1.29 8.14 -2.39 -0.02 1.27 15 23 H 0.04 1.19 8.14 -2.39 -0.02 1.17 15 24 H 0.09 1.67 8.14 -2.38 -0.02 1.65 15 25 H 0.13 6.12 7.46 -2.91 -0.02 6.09 15 26 H 0.27 15.14 8.30 -92.71 -0.77 14.38 15 27 H 0.07 2.26 8.14 -2.38 -0.02 2.24 15 28 H 0.07 2.56 8.14 -2.38 -0.02 2.54 15 29 H 0.11 2.77 6.89 -2.39 -0.02 2.76 15 Total: -1.00 -76.03 248.41 5.67 -70.36 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 1.12 Total: 11.27 kcal Atomic # 6 Polarization: -39.95 SS G_CDS: 4.11 Total: -35.84 kcal Atomic # 7 Polarization: -89.94 SS G_CDS: -1.59 Total: -91.53 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -76.03 5.67 -70.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041167776.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.545 kcal (2) G-P(sol) polarization free energy of solvation -76.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds