Wall clock time and date at job start Mon Mar 30 2020 02:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46883 * 2 1 4 4 C 1.53006 * 109.46974 * 240.00393 * 2 1 3 5 5 C 1.50700 * 109.47588 * 120.00230 * 2 1 3 6 6 C 1.35073 * 126.31043 * 185.00034 * 5 2 1 7 7 C 1.42226 * 105.54802 * 180.02562 * 6 5 2 8 8 C 1.41425 * 126.56967 * 180.02562 * 7 6 5 9 9 H 1.08000 * 119.99962 * 0.02562 * 8 7 6 10 10 C 1.39856 * 119.99893 * 179.97438 * 8 7 6 11 11 N 1.30892 * 120.00028 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99886 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.46861 * 0.02562 * 12 10 8 14 14 H 1.48492 * 109.46957 * 119.99981 * 12 10 8 15 15 H 1.48493 * 109.47069 * 240.00364 * 12 10 8 16 16 N 1.32755 * 106.86408 * 0.02562 * 7 6 5 17 17 N 1.28474 * 109.92967 * 359.97438 * 16 7 6 18 18 H 0.97005 * 124.86039 * 179.73441 * 17 16 7 19 19 H 1.08999 * 109.47154 * 299.99180 * 1 2 3 20 20 H 1.08989 * 109.47887 * 59.99821 * 1 2 3 21 21 H 1.09011 * 109.46819 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47273 * 180.02562 * 3 2 1 23 23 H 1.09001 * 109.47219 * 300.00400 * 3 2 1 24 24 H 1.08992 * 109.47125 * 60.00120 * 3 2 1 25 25 H 1.08996 * 109.47022 * 299.99726 * 4 2 1 26 26 H 1.09001 * 109.47142 * 59.99591 * 4 2 1 27 27 H 1.08996 * 109.47001 * 179.97438 * 4 2 1 28 28 H 1.07999 * 127.22223 * 0.02562 * 6 5 2 29 29 H 0.96996 * 119.99491 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0324 -0.7104 1.2304 6 6 3.3214 -0.8246 1.6178 7 6 3.2913 -1.5738 2.8263 8 6 4.4052 -1.9504 3.6122 9 1 5.4015 -1.6651 3.3085 10 6 4.2163 -2.6914 4.7832 11 7 3.0087 -3.0367 5.1516 12 14 5.6876 -3.1895 5.8209 13 1 6.9324 -2.6799 5.1914 14 1 5.5505 -2.6136 7.1827 15 1 5.7495 -4.6702 5.9134 16 7 2.0173 -1.8520 3.0754 17 7 1.2724 -1.3551 2.1542 18 1 0.3060 -1.4328 2.1204 19 1 -0.3633 0.5137 0.8900 20 1 -0.3634 0.5138 -0.8898 21 1 -0.3633 -1.0278 0.0005 22 1 3.1300 1.4426 -0.0005 23 1 1.6765 1.9564 -0.8899 24 1 1.6766 1.9563 0.8899 25 1 1.6767 -1.7488 -1.2494 26 1 1.6766 -0.2073 -2.1393 27 1 3.1299 -0.7208 -1.2496 28 1 4.1920 -0.4297 1.1153 29 1 2.8778 -3.5509 5.9635 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059816264.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:33 Heat of formation + Delta-G solvation = 26.049712 kcal Electronic energy + Delta-G solvation = -12145.197781 eV Core-core repulsion = 10068.175032 eV Total energy + Delta-G solvation = -2077.022749 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.37177 -37.54694 -35.22268 -32.05832 -29.84991 -28.35319 -28.04298 -27.20509 -22.83377 -21.63991 -20.35544 -18.24133 -17.65814 -16.46911 -15.64553 -15.22143 -14.77228 -14.57660 -14.42451 -13.95015 -13.05255 -13.04873 -12.97436 -12.87304 -12.54621 -12.52465 -12.00584 -11.84287 -11.71487 -11.43736 -11.18280 -10.30313 -9.51411 -9.09477 -8.26895 -6.21859 1.40280 1.42703 1.58786 1.81621 2.35442 2.43590 2.93406 3.66225 3.84056 4.02354 4.14318 4.51805 4.75075 4.82282 4.83227 4.91883 5.01824 5.05717 5.14267 5.23279 5.32658 5.42763 5.50931 5.51712 5.71185 5.95945 6.44306 7.00435 7.05456 7.33508 8.39408 8.73973 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.073281 B = 0.009291 C = 0.008738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.996648 B = 3012.819964 C = 3203.757690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.004 3.996 3 C -0.129 4.129 4 C -0.129 4.129 5 C 0.029 3.971 6 C -0.316 4.316 7 C 0.151 3.849 8 C -0.489 4.489 9 H 0.078 0.922 10 C 0.020 3.980 11 N -0.827 5.827 12 Si 0.985 3.015 13 H -0.256 1.256 14 H -0.271 1.271 15 H -0.271 1.271 16 N -0.373 5.373 17 N -0.436 5.436 18 H 0.427 0.573 19 H 0.051 0.949 20 H 0.091 0.909 21 H 0.052 0.948 22 H 0.049 0.951 23 H 0.087 0.913 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.088 0.912 27 H 0.048 0.952 28 H 0.128 0.872 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.248 5.606 -9.610 11.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.002 3.998 3 C -0.186 4.186 4 C -0.187 4.187 5 C -0.100 4.100 6 C -0.346 4.346 7 C 0.000 4.000 8 C -0.528 4.528 9 H 0.096 0.904 10 C -0.193 4.193 11 N -0.458 5.458 12 Si 0.807 3.193 13 H -0.180 1.180 14 H -0.196 1.196 15 H -0.196 1.196 16 N -0.206 5.206 17 N -0.144 5.144 18 H 0.269 0.731 19 H 0.070 0.930 20 H 0.110 0.890 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.106 0.894 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.106 0.894 27 H 0.067 0.933 28 H 0.146 0.854 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.105 4.964 -8.700 10.825 hybrid contribution 0.699 -0.098 0.265 0.753 sum -3.406 4.866 -8.436 10.317 Atomic orbital electron populations 1.21907 0.92991 1.02071 1.03258 1.19193 0.96222 0.94905 0.89483 1.21800 1.01069 0.93592 1.02180 1.21810 1.01025 0.99679 0.96165 1.21592 0.91288 1.01689 0.95424 1.21441 0.96441 1.14662 1.02052 1.19766 0.91290 0.95461 0.93480 1.18951 0.92557 1.34079 1.07224 0.90431 1.26712 0.99457 0.94493 0.98605 1.70116 1.23716 1.30270 1.21655 0.85124 0.78360 0.78179 0.77687 1.17964 1.19649 1.19640 1.74560 1.03702 1.27420 1.14895 1.43600 1.09127 1.43238 1.18430 0.73084 0.92987 0.89006 0.92866 0.93159 0.89407 0.93816 0.93822 0.89365 0.93253 0.85434 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 7.57 71.98 0.54 -2.88 15 2 C 0.00 0.11 0.94 -52.93 -0.05 0.06 15 3 C -0.13 -3.38 8.31 71.98 0.60 -2.78 15 4 C -0.13 -3.38 8.40 71.98 0.60 -2.78 15 5 C 0.03 1.22 5.60 41.20 0.23 1.45 15 6 C -0.32 -15.99 10.32 22.53 0.23 -15.76 15 7 C 0.15 9.06 6.78 40.78 0.28 9.33 15 8 C -0.49 -29.66 9.42 23.45 0.22 -29.44 15 9 H 0.08 4.46 7.84 -2.91 -0.02 4.43 15 10 C 0.02 1.18 5.49 85.22 0.47 1.65 15 11 N -0.83 -50.27 11.97 21.81 0.26 -50.01 15 12 Si 0.98 43.24 29.56 68.60 2.03 45.26 15 13 H -0.26 -10.72 7.11 99.48 0.71 -10.01 15 14 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 15 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 16 N -0.37 -22.03 10.50 -51.61 -0.54 -22.57 15 17 N -0.44 -20.58 6.65 -47.63 -0.32 -20.90 15 18 H 0.43 16.85 7.93 -219.98 -1.74 15.11 15 19 H 0.05 1.27 8.14 -2.39 -0.02 1.25 15 20 H 0.09 1.59 8.14 -2.39 -0.02 1.57 15 21 H 0.05 1.26 7.91 -2.38 -0.02 1.24 15 22 H 0.05 1.41 7.93 -2.38 -0.02 1.39 15 23 H 0.09 1.67 8.14 -2.39 -0.02 1.65 15 24 H 0.04 1.23 8.14 -2.39 -0.02 1.21 15 25 H 0.04 1.21 8.14 -2.39 -0.02 1.19 15 26 H 0.09 1.67 8.14 -2.39 -0.02 1.65 15 27 H 0.05 1.39 8.10 -2.39 -0.02 1.37 15 28 H 0.13 5.98 8.06 -2.91 -0.02 5.95 15 29 H 0.27 15.00 8.30 -92.71 -0.77 14.23 15 Total: -1.00 -72.54 247.75 3.94 -68.59 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: -0.61 Total: 20.77 kcal Atomic # 6 Polarization: -44.27 SS G_CDS: 3.13 Total: -41.15 kcal Atomic # 7 Polarization: -92.88 SS G_CDS: -0.60 Total: -93.48 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -72.54 3.94 -68.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059816264.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.644 kcal (2) G-P(sol) polarization free energy of solvation -72.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds