Wall clock time and date at job start Mon Mar 30 2020 02:27:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17402 * 1
3 3 C 1.47201 * 179.97438 * 2 1
4 4 N 1.46898 * 109.47075 * 152.15786 * 3 2 1
5 5 C 1.46900 * 111.00130 * 294.30166 * 4 3 2
6 6 C 1.53238 * 109.34203 * 172.74508 * 5 4 3
7 7 N 1.47075 * 108.51979 * 53.83030 * 6 5 4
8 8 C 1.36940 * 120.88324 * 128.83802 * 7 6 5
9 9 H 1.07999 * 120.00113 * 206.55908 * 8 7 6
10 10 C 1.38809 * 119.99662 * 26.55681 * 8 7 6
11 11 N 1.31624 * 120.00395 * 17.02961 * 10 8 7
12 12 Si 1.86806 * 120.00052 * 197.02772 * 10 8 7
13 13 H 1.48500 * 109.46747 * 0.02562 * 12 10 8
14 14 H 1.48508 * 109.46917 * 119.99917 * 12 10 8
15 15 H 1.48499 * 109.47335 * 239.99998 * 12 10 8
16 16 C 1.47077 * 118.23942 * 308.81680 * 7 6 5
17 17 C 1.46900 * 111.00251 * 170.00179 * 4 3 2
18 18 H 4.40886 * 5.52191 * 180.02562 * 4 1 2
19 19 H 1.08996 * 109.47140 * 272.16169 * 3 2 1
20 20 H 1.09003 * 109.46879 * 32.15616 * 3 2 1
21 21 H 1.09005 * 109.49582 * 292.70649 * 5 4 3
22 22 H 1.09004 * 109.49418 * 52.78487 * 5 4 3
23 23 H 1.08996 * 109.62883 * 294.12022 * 6 5 4
24 24 H 1.08998 * 109.62934 * 173.54045 * 6 5 4
25 25 H 0.97002 * 119.99984 * 179.97438 * 11 10 8
26 26 H 1.09002 * 109.62815 * 291.47671 * 16 7 6
27 27 H 1.08998 * 109.78957 * 170.99013 * 16 7 6
28 28 H 1.09006 * 109.48641 * 307.21290 * 17 4 3
29 29 H 1.08997 * 109.49187 * 67.29349 * 17 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1351 1.2255 -0.6468
5 6 2.7785 1.2469 -2.0717
6 6 3.1436 2.6114 -2.6659
7 7 4.5593 2.8839 -2.3750
8 6 5.4228 3.2547 -3.3711
9 1 6.4779 3.0441 -3.2772
10 6 4.9419 3.9012 -4.5014
11 7 3.7479 4.4550 -4.4850
12 14 5.9892 3.9852 -6.0460
13 1 7.2797 3.2904 -5.8073
14 1 5.2722 3.3255 -7.1667
15 1 6.2479 5.4060 -6.3920
16 6 5.0230 2.7481 -0.9859
17 6 4.5839 1.3782 -0.4579
18 1 -1.0502 -0.0002 0.0003
19 1 3.0094 -0.0379 1.0269
20 1 3.0097 -0.8692 -0.5470
21 1 3.3264 0.4636 -2.5957
22 1 1.7073 1.0773 -2.1812
23 1 2.5217 3.3850 -2.2156
24 1 2.9880 2.5945 -3.7446
25 1 3.4121 4.9071 -5.2748
26 1 4.5817 3.5349 -0.3740
27 1 6.1098 2.8229 -0.9506
28 1 4.8220 1.3040 0.6033
29 1 5.1067 0.5932 -1.0042
RHF calculation, no. of doubly occupied orbitals= 36
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000070994841.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:27:20
Heat of formation + Delta-G solvation = 88.409267 kcal
Electronic energy + Delta-G solvation = -12195.011483 eV
Core-core repulsion = 10120.692847 eV
Total energy + Delta-G solvation = -2074.318636 eV
No. of doubly occupied orbitals = 36
Molecular weight
(most abundant/longest-lived isotopes) = 194.111 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-38.16340 -34.81511 -32.65514 -30.98326 -29.90803 -27.62724 -24.79194 -22.57483
-22.33695 -19.08546 -17.89229 -16.76472 -15.21975 -14.65890 -14.47928 -14.34608
-13.46282 -13.30956 -13.07300 -12.57593 -12.06527 -11.46640 -11.08105 -10.74910
-10.55649 -10.43646 -10.13865 -10.12430 -9.87677 -9.72007 -9.56135 -8.49635
-7.85268 -6.65100 -5.76252 -3.17562 2.96168 3.06890 3.38323 3.45947
3.48264 4.47940 4.52734 4.73123 5.40401 5.46141 5.57296 5.60853
5.91091 5.97112 6.11133 6.15222 6.30133 6.34207 6.55739 6.71670
6.94508 7.26093 7.55148 7.66706 7.71770 7.83466 7.85658 8.45220
9.22943 9.86499 10.45156 11.32681
Molecular weight = 194.11amu
Principal moments of inertia in cm(-1)
A = 0.059820 B = 0.009614 C = 0.008827
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 467.954856 B = 2911.685447 C = 3171.257365
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C -0.165 4.165
3 C 0.156 3.844
4 N -0.531 5.531
5 C 0.035 3.965
6 C 0.179 3.821
7 N -0.596 5.596
8 C -0.252 4.252
9 H 0.067 0.933
10 C 0.001 3.999
11 N -0.903 5.903
12 Si 0.902 3.098
13 H -0.278 1.278
14 H -0.289 1.289
15 H -0.290 1.290
16 C 0.148 3.852
17 C 0.044 3.956
18 H 0.215 0.785
19 H 0.090 0.910
20 H 0.050 0.950
21 H 0.026 0.974
22 H 0.061 0.939
23 H 0.026 0.974
24 H 0.089 0.911
25 H 0.253 0.747
26 H 0.026 0.974
27 H 0.057 0.943
28 H 0.064 0.936
29 H 0.030 0.970
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.163 -7.785 6.732 10.517
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.234 4.234
2 C -0.165 4.165
3 C 0.029 3.971
4 N -0.256 5.256
5 C -0.094 4.094
6 C 0.053 3.947
7 N -0.319 5.319
8 C -0.381 4.381
9 H 0.085 0.915
10 C -0.198 4.198
11 N -0.548 5.548
12 Si 0.732 3.268
13 H -0.203 1.203
14 H -0.216 1.216
15 H -0.217 1.217
16 C 0.022 3.978
17 C -0.085 4.085
18 H 0.232 0.768
19 H 0.109 0.891
20 H 0.068 0.932
21 H 0.044 0.956
22 H 0.080 0.920
23 H 0.044 0.956
24 H 0.107 0.893
25 H 0.063 0.937
26 H 0.044 0.956
27 H 0.076 0.924
28 H 0.082 0.918
29 H 0.048 0.952
Dipole moment (debyes) X Y Z Total
from point charges -2.414 -7.278 6.806 10.253
hybrid contribution 0.579 -0.610 -1.197 1.463
sum -1.835 -7.889 5.609 9.852
Atomic orbital electron populations
1.24784 0.95792 1.01126 1.01720 1.23001 0.94330 0.99620 0.99591
1.19069 0.85028 0.92802 1.00191 1.61975 1.14586 1.33885 1.15172
1.22934 0.98974 1.01382 0.86083 1.20862 0.84351 0.89507 1.00029
1.44143 1.06595 1.79210 1.01990 1.19249 0.90774 1.31203 0.96904
0.91536 1.25031 0.97279 0.97529 0.99932 1.70047 1.18620 1.37700
1.28457 0.86227 0.79738 0.77310 0.83529 1.20297 1.21588 1.21705
1.20973 0.97169 0.92555 0.87137 1.22657 0.86383 1.00143 0.99326
0.76842 0.89148 0.93189 0.95597 0.92025 0.95555 0.89297 0.93664
0.95608 0.92431 0.91761 0.95154
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.22 -3.00 19.25 29.55 0.57 -2.43 15
2 C -0.16 -2.59 12.32 -37.12 -0.46 -3.05 15
3 C 0.16 2.40 5.46 -6.61 -0.04 2.36 15
4 N -0.53 -10.01 4.61 -237.83 -1.10 -11.11 15
5 C 0.04 0.73 5.46 -3.70 -0.02 0.71 15
6 C 0.18 4.49 5.42 -3.61 -0.02 4.47 15
7 N -0.60 -15.49 3.04 -172.03 -0.52 -16.01 15
8 C -0.25 -7.04 9.63 -15.06 -0.15 -7.19 15
9 H 0.07 1.82 7.88 -52.49 -0.41 1.40 15
10 C 0.00 0.02 4.94 -17.43 -0.09 -0.07 15
11 N -0.90 -26.73 11.15 55.49 0.62 -26.11 15
12 Si 0.90 21.88 29.59 -169.99 -5.03 16.85 15
13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15
14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 15
15 H -0.29 -7.08 7.11 56.52 0.40 -6.68 15
16 C 0.15 3.22 6.69 -3.61 -0.02 3.19 15
17 C 0.04 0.80 5.62 -3.70 -0.02 0.78 15
18 H 0.21 2.13 7.80 -54.08 -0.42 1.71 15
19 H 0.09 1.19 7.97 -51.93 -0.41 0.78 15
20 H 0.05 0.73 8.12 -51.93 -0.42 0.31 15
21 H 0.03 0.55 8.14 -51.93 -0.42 0.12 15
22 H 0.06 1.23 7.07 -51.93 -0.37 0.86 15
23 H 0.03 0.71 8.14 -51.93 -0.42 0.29 15
24 H 0.09 2.45 6.12 -51.93 -0.32 2.13 15
25 H 0.25 7.20 8.31 -40.82 -0.34 6.86 15
26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 15
27 H 0.06 1.18 7.96 -51.93 -0.41 0.77 15
28 H 0.06 0.97 7.99 -51.93 -0.41 0.56 15
29 H 0.03 0.56 8.14 -51.93 -0.42 0.13 15
LS Contribution 246.29 15.07 3.71 3.71
Total: -1.00 -30.72 246.29 -6.57 -37.28
By element:
Atomic # 1 Polarization: 0.61 SS G_CDS: -4.01 Total: -3.40 kcal
Atomic # 6 Polarization: -0.98 SS G_CDS: -0.24 Total: -1.22 kcal
Atomic # 7 Polarization: -52.23 SS G_CDS: -1.00 Total: -53.23 kcal
Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal
Total LS contribution 3.71 Total: 3.71 kcal
Total: -30.72 -6.57 -37.28 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000070994841.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 125.693 kcal
(2) G-P(sol) polarization free energy of solvation -30.716 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.977 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.568 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.284 kcal
(6) G-S(sol) free energy of system = (1) + (5) 88.409 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds