Wall clock time and date at job start Mon Mar 30 2020 02:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46898 * 109.47075 * 152.15786 * 3 2 1 5 5 C 1.46900 * 111.00130 * 294.30166 * 4 3 2 6 6 C 1.53238 * 109.34203 * 172.74508 * 5 4 3 7 7 N 1.47075 * 108.51979 * 53.83030 * 6 5 4 8 8 C 1.36940 * 120.88324 * 128.83802 * 7 6 5 9 9 H 1.07999 * 120.00113 * 206.55908 * 8 7 6 10 10 C 1.38809 * 119.99662 * 26.55681 * 8 7 6 11 11 N 1.31624 * 120.00395 * 17.02961 * 10 8 7 12 12 Si 1.86806 * 120.00052 * 197.02772 * 10 8 7 13 13 H 1.48500 * 109.46747 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46917 * 119.99917 * 12 10 8 15 15 H 1.48499 * 109.47335 * 239.99998 * 12 10 8 16 16 C 1.47077 * 118.23942 * 308.81680 * 7 6 5 17 17 C 1.46900 * 111.00251 * 170.00179 * 4 3 2 18 18 H 4.40886 * 5.52191 * 180.02562 * 4 1 2 19 19 H 1.08996 * 109.47140 * 272.16169 * 3 2 1 20 20 H 1.09003 * 109.46879 * 32.15616 * 3 2 1 21 21 H 1.09005 * 109.49582 * 292.70649 * 5 4 3 22 22 H 1.09004 * 109.49418 * 52.78487 * 5 4 3 23 23 H 1.08996 * 109.62883 * 294.12022 * 6 5 4 24 24 H 1.08998 * 109.62934 * 173.54045 * 6 5 4 25 25 H 0.97002 * 119.99984 * 179.97438 * 11 10 8 26 26 H 1.09002 * 109.62815 * 291.47671 * 16 7 6 27 27 H 1.08998 * 109.78957 * 170.99013 * 16 7 6 28 28 H 1.09006 * 109.48641 * 307.21290 * 17 4 3 29 29 H 1.08997 * 109.49187 * 67.29349 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1351 1.2255 -0.6468 5 6 2.7785 1.2469 -2.0717 6 6 3.1436 2.6114 -2.6659 7 7 4.5593 2.8839 -2.3750 8 6 5.4228 3.2547 -3.3711 9 1 6.4779 3.0441 -3.2772 10 6 4.9419 3.9012 -4.5014 11 7 3.7479 4.4550 -4.4850 12 14 5.9892 3.9852 -6.0460 13 1 7.2797 3.2904 -5.8073 14 1 5.2722 3.3255 -7.1667 15 1 6.2479 5.4060 -6.3920 16 6 5.0230 2.7481 -0.9859 17 6 4.5839 1.3782 -0.4579 18 1 -1.0502 -0.0002 0.0003 19 1 3.0094 -0.0379 1.0269 20 1 3.0097 -0.8692 -0.5470 21 1 3.3264 0.4636 -2.5957 22 1 1.7073 1.0773 -2.1812 23 1 2.5217 3.3850 -2.2156 24 1 2.9880 2.5945 -3.7446 25 1 3.4121 4.9071 -5.2748 26 1 4.5817 3.5349 -0.3740 27 1 6.1098 2.8229 -0.9506 28 1 4.8220 1.3040 0.6033 29 1 5.1067 0.5932 -1.0042 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070994841.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:19 Heat of formation + Delta-G solvation = 67.715665 kcal Electronic energy + Delta-G solvation = -12195.908825 eV Core-core repulsion = 10120.692847 eV Total energy + Delta-G solvation = -2075.215978 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.76284 -36.53497 -34.15189 -32.74528 -31.66805 -29.24073 -26.53685 -24.29732 -24.10910 -20.86881 -19.05140 -18.67587 -17.05602 -16.28708 -16.04470 -15.68064 -15.33319 -14.99204 -14.95266 -13.95283 -13.67804 -13.21234 -12.99808 -12.64715 -12.35100 -12.11830 -11.95887 -11.70843 -11.60186 -11.20892 -11.03640 -10.61267 -9.33776 -8.70749 -7.88849 -5.34068 1.46123 1.47440 1.58640 1.80451 1.96361 2.50390 3.17063 3.27664 3.58525 3.66794 4.25276 4.30411 4.37143 4.49957 4.63129 4.65340 4.74604 4.87580 5.01423 5.11980 5.19720 5.34650 5.60248 5.63704 6.11264 6.18978 6.36011 6.75797 7.11348 7.81940 8.36804 9.18680 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.059820 B = 0.009614 C = 0.008827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.954856 B = 2911.685447 C = 3171.257365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.213 4.213 3 C 0.159 3.841 4 N -0.545 5.545 5 C 0.055 3.945 6 C 0.187 3.813 7 N -0.615 5.615 8 C -0.264 4.264 9 H 0.072 0.928 10 C -0.053 4.053 11 N -0.939 5.939 12 Si 0.971 3.029 13 H -0.265 1.265 14 H -0.290 1.290 15 H -0.292 1.292 16 C 0.141 3.859 17 C 0.054 3.946 18 H 0.247 0.753 19 H 0.116 0.884 20 H 0.060 0.940 21 H 0.023 0.977 22 H 0.068 0.932 23 H -0.005 1.005 24 H 0.057 0.943 25 H 0.250 0.750 26 H 0.015 0.985 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.842 -9.160 7.592 12.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.214 4.214 3 C 0.033 3.967 4 N -0.271 5.271 5 C -0.075 4.075 6 C 0.061 3.939 7 N -0.339 5.339 8 C -0.394 4.394 9 H 0.089 0.911 10 C -0.248 4.248 11 N -0.585 5.585 12 Si 0.798 3.202 13 H -0.189 1.189 14 H -0.216 1.216 15 H -0.219 1.219 16 C 0.016 3.984 17 C -0.074 4.074 18 H 0.263 0.737 19 H 0.134 0.866 20 H 0.078 0.922 21 H 0.041 0.959 22 H 0.087 0.913 23 H 0.013 0.987 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.033 0.967 27 H 0.085 0.915 28 H 0.122 0.878 29 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.079 -8.677 7.701 11.786 hybrid contribution 0.427 -0.167 -1.379 1.453 sum -1.652 -8.844 6.322 10.996 Atomic orbital electron populations 1.25682 0.96765 0.99068 0.99891 1.23374 0.95148 1.01498 1.01370 1.19124 0.85168 0.91198 1.01183 1.61877 1.15055 1.36611 1.13512 1.22536 0.99241 0.98097 0.87608 1.20581 0.84001 0.91160 0.98159 1.44427 1.06539 1.79389 1.03553 1.19623 0.91372 1.30666 0.97775 0.91076 1.25841 0.98575 0.97553 1.02861 1.70211 1.20456 1.38847 1.29008 0.85160 0.78543 0.77005 0.79444 1.18883 1.21648 1.21854 1.21168 0.97755 0.94592 0.84895 1.22529 0.86023 0.97442 1.01422 0.73651 0.86594 0.92205 0.95885 0.91337 0.98735 0.92443 0.94053 0.96728 0.91484 0.87841 0.95006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.91 19.25 74.32 1.43 -3.48 15 2 C -0.21 -6.21 12.32 31.13 0.38 -5.82 15 3 C 0.16 4.46 5.46 84.50 0.46 4.92 15 4 N -0.55 -19.60 4.61 -906.35 -4.18 -23.77 15 5 C 0.05 2.25 5.46 86.38 0.47 2.72 15 6 C 0.19 9.67 5.42 86.35 0.47 10.14 15 7 N -0.61 -32.29 3.04 -698.17 -2.12 -34.41 15 8 C -0.26 -14.89 9.63 84.03 0.81 -14.08 15 9 H 0.07 3.85 7.88 -2.91 -0.02 3.83 15 10 C -0.05 -3.04 4.94 84.86 0.42 -2.62 15 11 N -0.94 -57.12 11.15 21.65 0.24 -56.88 15 12 Si 0.97 45.42 29.59 68.60 2.03 47.45 15 13 H -0.26 -11.68 7.11 99.48 0.71 -10.97 15 14 H -0.29 -13.48 7.11 99.48 0.71 -12.78 15 15 H -0.29 -13.62 7.11 99.48 0.71 -12.91 15 16 C 0.14 6.03 6.69 86.35 0.58 6.61 15 17 C 0.05 1.85 5.62 86.38 0.49 2.33 15 18 H 0.25 4.02 7.80 -4.41 -0.03 3.98 15 19 H 0.12 2.62 7.97 -2.39 -0.02 2.60 15 20 H 0.06 1.57 8.12 -2.39 -0.02 1.55 15 21 H 0.02 0.96 8.14 -2.38 -0.02 0.94 15 22 H 0.07 2.70 7.07 -2.38 -0.02 2.68 15 23 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 15 24 H 0.06 3.29 6.12 -2.39 -0.01 3.28 15 25 H 0.25 14.65 8.31 -92.71 -0.77 13.88 15 26 H 0.01 0.66 8.14 -2.39 -0.02 0.64 15 27 H 0.07 2.67 7.96 -2.39 -0.02 2.65 15 28 H 0.10 2.73 7.99 -2.38 -0.02 2.71 15 29 H 0.03 1.08 8.14 -2.39 -0.02 1.06 15 Total: -1.00 -66.67 246.29 2.59 -64.08 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: 1.11 Total: 2.82 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 5.51 Total: 0.71 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -6.05 Total: -115.07 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -66.67 2.59 -64.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070994841.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.801 kcal (2) G-P(sol) polarization free energy of solvation -66.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds