Wall clock time and date at job start Mon Mar 30 2020 02:27:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17402 * 1
3 3 C 1.47201 * 179.97438 * 2 1
4 4 N 1.46898 * 109.47075 * 152.15786 * 3 2 1
5 5 C 1.46900 * 111.00130 * 294.30166 * 4 3 2
6 6 C 1.53238 * 109.34203 * 172.74508 * 5 4 3
7 7 N 1.47075 * 108.51979 * 53.83030 * 6 5 4
8 8 C 1.36940 * 120.88324 * 128.83802 * 7 6 5
9 9 H 1.07999 * 120.00113 * 206.55908 * 8 7 6
10 10 C 1.38809 * 119.99662 * 26.55681 * 8 7 6
11 11 N 1.31624 * 120.00395 * 17.02961 * 10 8 7
12 12 Si 1.86806 * 120.00052 * 197.02772 * 10 8 7
13 13 H 1.48500 * 109.46747 * 0.02562 * 12 10 8
14 14 H 1.48508 * 109.46917 * 119.99917 * 12 10 8
15 15 H 1.48499 * 109.47335 * 239.99998 * 12 10 8
16 16 C 1.47077 * 118.23942 * 308.81680 * 7 6 5
17 17 C 1.46900 * 111.00251 * 170.00179 * 4 3 2
18 18 H 4.40886 * 5.52191 * 180.02562 * 4 1 2
19 19 H 1.08996 * 109.47140 * 272.16169 * 3 2 1
20 20 H 1.09003 * 109.46879 * 32.15616 * 3 2 1
21 21 H 1.09005 * 109.49582 * 292.70649 * 5 4 3
22 22 H 1.09004 * 109.49418 * 52.78487 * 5 4 3
23 23 H 1.08996 * 109.62883 * 294.12022 * 6 5 4
24 24 H 1.08998 * 109.62934 * 173.54045 * 6 5 4
25 25 H 0.97002 * 119.99984 * 179.97438 * 11 10 8
26 26 H 1.09002 * 109.62815 * 291.47671 * 16 7 6
27 27 H 1.08998 * 109.78957 * 170.99013 * 16 7 6
28 28 H 1.09006 * 109.48641 * 307.21290 * 17 4 3
29 29 H 1.08997 * 109.49187 * 67.29349 * 17 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1351 1.2255 -0.6468
5 6 2.7785 1.2469 -2.0717
6 6 3.1436 2.6114 -2.6659
7 7 4.5593 2.8839 -2.3750
8 6 5.4228 3.2547 -3.3711
9 1 6.4779 3.0441 -3.2772
10 6 4.9419 3.9012 -4.5014
11 7 3.7479 4.4550 -4.4850
12 14 5.9892 3.9852 -6.0460
13 1 7.2797 3.2904 -5.8073
14 1 5.2722 3.3255 -7.1667
15 1 6.2479 5.4060 -6.3920
16 6 5.0230 2.7481 -0.9859
17 6 4.5839 1.3782 -0.4579
18 1 -1.0502 -0.0002 0.0003
19 1 3.0094 -0.0379 1.0269
20 1 3.0097 -0.8692 -0.5470
21 1 3.3264 0.4636 -2.5957
22 1 1.7073 1.0773 -2.1812
23 1 2.5217 3.3850 -2.2156
24 1 2.9880 2.5945 -3.7446
25 1 3.4121 4.9071 -5.2748
26 1 4.5817 3.5349 -0.3740
27 1 6.1098 2.8229 -0.9506
28 1 4.8220 1.3040 0.6033
29 1 5.1067 0.5932 -1.0042
RHF calculation, no. of doubly occupied orbitals= 36
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000070994841.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:27:19
Heat of formation + Delta-G solvation = 67.715665 kcal
Electronic energy + Delta-G solvation = -12195.908825 eV
Core-core repulsion = 10120.692847 eV
Total energy + Delta-G solvation = -2075.215978 eV
No. of doubly occupied orbitals = 36
Molecular weight
(most abundant/longest-lived isotopes) = 194.111 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-39.76284 -36.53497 -34.15189 -32.74528 -31.66805 -29.24073 -26.53685 -24.29732
-24.10910 -20.86881 -19.05140 -18.67587 -17.05602 -16.28708 -16.04470 -15.68064
-15.33319 -14.99204 -14.95266 -13.95283 -13.67804 -13.21234 -12.99808 -12.64715
-12.35100 -12.11830 -11.95887 -11.70843 -11.60186 -11.20892 -11.03640 -10.61267
-9.33776 -8.70749 -7.88849 -5.34068 1.46123 1.47440 1.58640 1.80451
1.96361 2.50390 3.17063 3.27664 3.58525 3.66794 4.25276 4.30411
4.37143 4.49957 4.63129 4.65340 4.74604 4.87580 5.01423 5.11980
5.19720 5.34650 5.60248 5.63704 6.11264 6.18978 6.36011 6.75797
7.11348 7.81940 8.36804 9.18680
Molecular weight = 194.11amu
Principal moments of inertia in cm(-1)
A = 0.059820 B = 0.009614 C = 0.008827
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 467.954856 B = 2911.685447 C = 3171.257365
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.213 4.213
3 C 0.159 3.841
4 N -0.545 5.545
5 C 0.055 3.945
6 C 0.187 3.813
7 N -0.615 5.615
8 C -0.264 4.264
9 H 0.072 0.928
10 C -0.053 4.053
11 N -0.939 5.939
12 Si 0.971 3.029
13 H -0.265 1.265
14 H -0.290 1.290
15 H -0.292 1.292
16 C 0.141 3.859
17 C 0.054 3.946
18 H 0.247 0.753
19 H 0.116 0.884
20 H 0.060 0.940
21 H 0.023 0.977
22 H 0.068 0.932
23 H -0.005 1.005
24 H 0.057 0.943
25 H 0.250 0.750
26 H 0.015 0.985
27 H 0.067 0.933
28 H 0.103 0.897
29 H 0.032 0.968
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.842 -9.160 7.592 12.039
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C -0.214 4.214
3 C 0.033 3.967
4 N -0.271 5.271
5 C -0.075 4.075
6 C 0.061 3.939
7 N -0.339 5.339
8 C -0.394 4.394
9 H 0.089 0.911
10 C -0.248 4.248
11 N -0.585 5.585
12 Si 0.798 3.202
13 H -0.189 1.189
14 H -0.216 1.216
15 H -0.219 1.219
16 C 0.016 3.984
17 C -0.074 4.074
18 H 0.263 0.737
19 H 0.134 0.866
20 H 0.078 0.922
21 H 0.041 0.959
22 H 0.087 0.913
23 H 0.013 0.987
24 H 0.076 0.924
25 H 0.059 0.941
26 H 0.033 0.967
27 H 0.085 0.915
28 H 0.122 0.878
29 H 0.050 0.950
Dipole moment (debyes) X Y Z Total
from point charges -2.079 -8.677 7.701 11.786
hybrid contribution 0.427 -0.167 -1.379 1.453
sum -1.652 -8.844 6.322 10.996
Atomic orbital electron populations
1.25682 0.96765 0.99068 0.99891 1.23374 0.95148 1.01498 1.01370
1.19124 0.85168 0.91198 1.01183 1.61877 1.15055 1.36611 1.13512
1.22536 0.99241 0.98097 0.87608 1.20581 0.84001 0.91160 0.98159
1.44427 1.06539 1.79389 1.03553 1.19623 0.91372 1.30666 0.97775
0.91076 1.25841 0.98575 0.97553 1.02861 1.70211 1.20456 1.38847
1.29008 0.85160 0.78543 0.77005 0.79444 1.18883 1.21648 1.21854
1.21168 0.97755 0.94592 0.84895 1.22529 0.86023 0.97442 1.01422
0.73651 0.86594 0.92205 0.95885 0.91337 0.98735 0.92443 0.94053
0.96728 0.91484 0.87841 0.95006
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -4.91 19.25 74.32 1.43 -3.48 15
2 C -0.21 -6.21 12.32 31.13 0.38 -5.82 15
3 C 0.16 4.46 5.46 84.50 0.46 4.92 15
4 N -0.55 -19.60 4.61 -906.35 -4.18 -23.77 15
5 C 0.05 2.25 5.46 86.38 0.47 2.72 15
6 C 0.19 9.67 5.42 86.35 0.47 10.14 15
7 N -0.61 -32.29 3.04 -698.17 -2.12 -34.41 15
8 C -0.26 -14.89 9.63 84.03 0.81 -14.08 15
9 H 0.07 3.85 7.88 -2.91 -0.02 3.83 15
10 C -0.05 -3.04 4.94 84.86 0.42 -2.62 15
11 N -0.94 -57.12 11.15 21.65 0.24 -56.88 15
12 Si 0.97 45.42 29.59 68.60 2.03 47.45 15
13 H -0.26 -11.68 7.11 99.48 0.71 -10.97 15
14 H -0.29 -13.48 7.11 99.48 0.71 -12.78 15
15 H -0.29 -13.62 7.11 99.48 0.71 -12.91 15
16 C 0.14 6.03 6.69 86.35 0.58 6.61 15
17 C 0.05 1.85 5.62 86.38 0.49 2.33 15
18 H 0.25 4.02 7.80 -4.41 -0.03 3.98 15
19 H 0.12 2.62 7.97 -2.39 -0.02 2.60 15
20 H 0.06 1.57 8.12 -2.39 -0.02 1.55 15
21 H 0.02 0.96 8.14 -2.38 -0.02 0.94 15
22 H 0.07 2.70 7.07 -2.38 -0.02 2.68 15
23 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 15
24 H 0.06 3.29 6.12 -2.39 -0.01 3.28 15
25 H 0.25 14.65 8.31 -92.71 -0.77 13.88 15
26 H 0.01 0.66 8.14 -2.39 -0.02 0.64 15
27 H 0.07 2.67 7.96 -2.39 -0.02 2.65 15
28 H 0.10 2.73 7.99 -2.38 -0.02 2.71 15
29 H 0.03 1.08 8.14 -2.39 -0.02 1.06 15
Total: -1.00 -66.67 246.29 2.59 -64.08
By element:
Atomic # 1 Polarization: 1.71 SS G_CDS: 1.11 Total: 2.82 kcal
Atomic # 6 Polarization: -4.79 SS G_CDS: 5.51 Total: 0.71 kcal
Atomic # 7 Polarization: -109.01 SS G_CDS: -6.05 Total: -115.07 kcal
Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal
Total: -66.67 2.59 -64.08 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000070994841.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 131.801 kcal
(2) G-P(sol) polarization free energy of solvation -66.673 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.127 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.085 kcal
(6) G-S(sol) free energy of system = (1) + (5) 67.716 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds