Wall clock time and date at job start Mon Mar 30 2020 02:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47160 * 2 1 4 4 C 1.53003 * 109.47254 * 240.00362 * 2 1 3 5 5 C 1.50698 * 109.47201 * 120.00233 * 2 1 3 6 6 N 1.31021 * 125.17466 * 254.99877 * 5 2 1 7 7 C 1.33013 * 109.97759 * 179.72094 * 6 5 2 8 8 C 1.39619 * 107.46442 * 0.44314 * 7 6 5 9 9 C 1.40070 * 127.06100 * 179.83498 * 8 7 6 10 10 H 1.07994 * 119.99574 * 343.13263 * 9 8 7 11 11 C 1.40067 * 119.99902 * 162.86203 * 9 8 7 12 12 N 1.30848 * 120.00049 * 169.75897 * 11 9 8 13 13 Si 1.86801 * 120.00077 * 349.75612 * 11 9 8 14 14 H 1.48501 * 109.47325 * 85.30546 * 13 11 9 15 15 H 1.48503 * 109.47249 * 205.30364 * 13 11 9 16 16 H 1.48500 * 109.47400 * 325.30597 * 13 11 9 17 17 N 1.35072 * 125.17899 * 75.00081 * 5 2 1 18 18 H 0.96998 * 126.48529 * 359.97438 * 17 5 2 19 19 H 1.08998 * 109.46807 * 300.00081 * 1 2 3 20 20 H 1.08995 * 109.46857 * 60.00041 * 1 2 3 21 21 H 1.08999 * 109.46823 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47562 * 179.97438 * 3 2 1 23 23 H 1.09004 * 109.46871 * 300.00501 * 3 2 1 24 24 H 1.09005 * 109.46955 * 60.00133 * 3 2 1 25 25 H 1.09003 * 109.46545 * 299.99748 * 4 2 1 26 26 H 1.09004 * 109.47068 * 59.99321 * 4 2 1 27 27 H 1.08994 * 109.46990 * 179.97438 * 4 2 1 28 28 H 1.08002 * 126.27353 * 180.28032 * 7 6 5 29 29 H 0.97004 * 120.00148 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 7 2.5453 -0.1242 2.2839 7 6 2.8826 -1.0357 3.1921 8 6 2.5662 -2.2893 2.6651 9 6 2.7546 -3.5346 3.2780 10 1 3.4201 -3.6250 4.1237 11 6 2.0756 -4.6615 2.7975 12 7 2.3966 -5.8533 3.2318 13 14 0.7117 -4.4630 1.5366 14 1 1.2998 -4.4205 0.1737 15 1 -0.2252 -5.6109 1.6358 16 1 -0.0240 -3.1997 1.7978 17 7 2.0224 -2.0484 1.4150 18 1 1.6957 -2.7145 0.7901 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 3.1300 1.4426 0.0005 23 1 1.6766 1.9564 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 1.6767 -1.7489 -1.2493 26 1 1.6766 -0.2073 -2.1393 27 1 3.1300 -0.7208 -1.2495 28 1 3.3232 -0.8418 4.1589 29 1 1.9261 -6.6337 2.8993 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074340819.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:59 Heat of formation + Delta-G solvation = 29.745278 kcal Electronic energy + Delta-G solvation = -12413.658898 eV Core-core repulsion = 10336.796400 eV Total energy + Delta-G solvation = -2076.862498 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.42294 -35.99793 -33.55413 -31.29681 -28.97238 -26.94576 -26.77426 -24.61342 -21.43028 -19.81358 -18.47064 -17.69748 -16.05540 -14.69065 -14.14046 -14.00528 -13.56921 -13.09340 -13.02426 -12.27420 -11.95469 -11.77638 -11.69781 -11.38378 -11.31556 -11.04924 -10.54563 -10.45548 -10.44251 -10.13089 -9.51565 -8.62681 -8.53719 -7.24193 -6.97469 -4.36426 2.66303 2.90085 2.92192 3.38911 3.72028 4.30907 4.40977 5.13628 5.16853 5.28276 5.44176 5.76864 5.85710 5.97188 6.05347 6.18481 6.27429 6.34457 6.39162 6.63422 6.70187 6.82652 6.91644 7.14790 7.52206 7.86399 8.29020 8.44671 8.72434 8.89716 9.61716 10.09406 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.045609 B = 0.014231 C = 0.011895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.772721 B = 1967.113597 C = 2353.394887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.030 3.970 3 C -0.118 4.118 4 C -0.142 4.142 5 C 0.101 3.899 6 N -0.459 5.459 7 C -0.170 4.170 8 C 0.179 3.821 9 C -0.437 4.437 10 H 0.108 0.892 11 C 0.081 3.919 12 N -0.817 5.817 13 Si 0.873 3.127 14 H -0.268 1.268 15 H -0.275 1.275 16 H -0.245 1.245 17 N -0.604 5.604 18 H 0.389 0.611 19 H 0.059 0.941 20 H 0.054 0.946 21 H 0.045 0.955 22 H 0.055 0.945 23 H 0.045 0.955 24 H 0.063 0.937 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.147 0.853 29 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.870 5.504 -7.900 10.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.028 3.972 3 C -0.176 4.176 4 C -0.200 4.200 5 C -0.155 4.155 6 N -0.178 5.178 7 C -0.318 4.318 8 C 0.065 3.935 9 C -0.473 4.473 10 H 0.125 0.875 11 C -0.136 4.136 12 N -0.445 5.445 13 Si 0.700 3.300 14 H -0.194 1.194 15 H -0.201 1.201 16 H -0.169 1.169 17 N -0.221 5.221 18 H 0.230 0.770 19 H 0.078 0.922 20 H 0.073 0.927 21 H 0.065 0.935 22 H 0.075 0.925 23 H 0.065 0.935 24 H 0.082 0.918 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.164 0.836 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.759 6.183 -7.726 10.585 hybrid contribution -0.887 -1.576 -0.855 2.001 sum -4.646 4.607 -8.581 10.791 Atomic orbital electron populations 1.21903 0.94931 1.01275 1.01514 1.18632 0.94242 0.94969 0.89369 1.21565 1.01267 0.93858 1.00902 1.21917 1.01625 0.99622 0.96843 1.21843 1.14030 0.80634 0.98954 1.69231 1.13571 1.34368 1.00602 1.22063 1.21140 0.87387 1.01180 1.19198 0.94862 0.96264 0.83175 1.18534 1.25212 0.88296 1.15237 0.87467 1.25954 0.96867 0.94877 0.95862 1.69588 1.37091 0.98879 1.38948 0.87015 0.82603 0.79872 0.80548 1.19445 1.20098 1.16931 1.43538 1.54716 1.07659 1.16214 0.77016 0.92212 0.92677 0.93549 0.92538 0.93550 0.91795 0.93656 0.92330 0.92212 0.83563 0.90514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.46 37.16 0.31 -1.90 15 2 C 0.03 0.53 0.99 -155.66 -0.15 0.38 15 3 C -0.12 -1.88 8.00 37.16 0.30 -1.59 15 4 C -0.14 -2.22 8.33 37.16 0.31 -1.91 15 5 C 0.10 2.30 6.41 -154.96 -0.99 1.30 15 6 N -0.46 -11.36 10.42 -9.76 -0.10 -11.47 15 7 C -0.17 -4.38 11.98 -16.52 -0.20 -4.58 15 8 C 0.18 4.70 6.27 -83.68 -0.52 4.18 15 9 C -0.44 -11.95 9.92 -38.21 -0.38 -12.33 15 10 H 0.11 3.04 8.06 -52.49 -0.42 2.62 15 11 C 0.08 2.13 5.52 -17.29 -0.10 2.04 15 12 N -0.82 -21.77 13.93 55.56 0.77 -21.00 15 13 Si 0.87 19.38 24.67 -169.99 -4.19 15.19 15 14 H -0.27 -5.59 6.82 56.52 0.39 -5.21 15 15 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 16 H -0.25 -5.59 6.73 56.52 0.38 -5.21 15 17 N -0.60 -14.56 4.55 -7.86 -0.04 -14.60 15 18 H 0.39 8.85 3.78 -40.82 -0.15 8.69 15 19 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 20 H 0.05 0.71 8.14 -51.93 -0.42 0.28 15 21 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 22 H 0.06 0.94 8.14 -51.93 -0.42 0.51 15 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 15 24 H 0.06 1.08 8.06 -51.93 -0.42 0.66 15 25 H 0.04 0.72 7.61 -51.93 -0.40 0.33 15 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 15 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 28 H 0.15 3.52 8.06 -52.49 -0.42 3.10 15 29 H 0.28 6.87 8.30 -40.82 -0.34 6.53 15 LS Contribution 240.96 15.07 3.63 3.63 Total: -1.00 -28.60 240.96 -5.29 -33.89 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -3.94 Total: 8.76 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -1.42 Total: -14.41 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.64 Total: -47.06 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.19 Total: 15.19 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -28.60 -5.29 -33.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074340819.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.635 kcal (2) G-P(sol) polarization free energy of solvation -28.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds