Wall clock time and date at job start Mon Mar 30 2020 02:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47160 * 2 1 4 4 C 1.53003 * 109.47254 * 240.00362 * 2 1 3 5 5 C 1.50698 * 109.47201 * 120.00233 * 2 1 3 6 6 N 1.31021 * 125.17466 * 254.99877 * 5 2 1 7 7 C 1.33013 * 109.97759 * 179.72094 * 6 5 2 8 8 C 1.39619 * 107.46442 * 0.44314 * 7 6 5 9 9 C 1.40070 * 127.06100 * 179.83498 * 8 7 6 10 10 H 1.07994 * 119.99574 * 343.13263 * 9 8 7 11 11 C 1.40067 * 119.99902 * 162.86203 * 9 8 7 12 12 N 1.30848 * 120.00049 * 169.75897 * 11 9 8 13 13 Si 1.86801 * 120.00077 * 349.75612 * 11 9 8 14 14 H 1.48501 * 109.47325 * 85.30546 * 13 11 9 15 15 H 1.48503 * 109.47249 * 205.30364 * 13 11 9 16 16 H 1.48500 * 109.47400 * 325.30597 * 13 11 9 17 17 N 1.35072 * 125.17899 * 75.00081 * 5 2 1 18 18 H 0.96998 * 126.48529 * 359.97438 * 17 5 2 19 19 H 1.08998 * 109.46807 * 300.00081 * 1 2 3 20 20 H 1.08995 * 109.46857 * 60.00041 * 1 2 3 21 21 H 1.08999 * 109.46823 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47562 * 179.97438 * 3 2 1 23 23 H 1.09004 * 109.46871 * 300.00501 * 3 2 1 24 24 H 1.09005 * 109.46955 * 60.00133 * 3 2 1 25 25 H 1.09003 * 109.46545 * 299.99748 * 4 2 1 26 26 H 1.09004 * 109.47068 * 59.99321 * 4 2 1 27 27 H 1.08994 * 109.46990 * 179.97438 * 4 2 1 28 28 H 1.08002 * 126.27353 * 180.28032 * 7 6 5 29 29 H 0.97004 * 120.00148 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 7 2.5453 -0.1242 2.2839 7 6 2.8826 -1.0357 3.1921 8 6 2.5662 -2.2893 2.6651 9 6 2.7546 -3.5346 3.2780 10 1 3.4201 -3.6250 4.1237 11 6 2.0756 -4.6615 2.7975 12 7 2.3966 -5.8533 3.2318 13 14 0.7117 -4.4630 1.5366 14 1 1.2998 -4.4205 0.1737 15 1 -0.2252 -5.6109 1.6358 16 1 -0.0240 -3.1997 1.7978 17 7 2.0224 -2.0484 1.4150 18 1 1.6957 -2.7145 0.7901 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 3.1300 1.4426 0.0005 23 1 1.6766 1.9564 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 1.6767 -1.7489 -1.2493 26 1 1.6766 -0.2073 -2.1393 27 1 3.1300 -0.7208 -1.2495 28 1 3.3232 -0.8418 4.1589 29 1 1.9261 -6.6337 2.8993 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074340819.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:59 Heat of formation + Delta-G solvation = 11.717634 kcal Electronic energy + Delta-G solvation = -12414.440635 eV Core-core repulsion = 10336.796400 eV Total energy + Delta-G solvation = -2077.644235 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.32225 -37.41946 -35.52999 -33.24600 -30.93784 -28.15431 -28.04225 -26.52366 -23.20573 -21.69252 -20.32402 -19.55821 -17.78834 -16.51916 -15.78296 -15.69013 -14.99572 -14.74412 -14.61403 -14.09410 -13.71922 -13.22458 -13.08988 -12.93472 -12.82811 -12.57335 -12.03896 -11.94665 -11.83512 -11.76253 -11.42667 -10.57332 -10.47472 -9.23546 -8.95154 -6.42163 0.89084 1.07180 1.18622 1.49230 1.88372 2.41106 2.55218 3.11462 3.67732 3.96332 4.12265 4.37555 4.64767 4.72014 4.81644 4.87658 4.94483 5.00787 5.04001 5.10386 5.13191 5.23661 5.44414 5.51249 5.58572 5.89363 6.16249 6.47715 6.67198 7.00151 7.67591 8.16245 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.045609 B = 0.014231 C = 0.011895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.772721 B = 1967.113597 C = 2353.394887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.019 3.981 3 C -0.114 4.114 4 C -0.141 4.141 5 C 0.124 3.876 6 N -0.482 5.482 7 C -0.191 4.191 8 C 0.158 3.842 9 C -0.469 4.469 10 H 0.075 0.925 11 C 0.042 3.958 12 N -0.851 5.851 13 Si 0.928 3.072 14 H -0.241 1.241 15 H -0.256 1.256 16 H -0.254 1.254 17 N -0.602 5.602 18 H 0.397 0.603 19 H 0.047 0.953 20 H 0.096 0.904 21 H 0.039 0.961 22 H 0.043 0.957 23 H 0.087 0.913 24 H 0.048 0.952 25 H 0.040 0.960 26 H 0.099 0.901 27 H 0.050 0.950 28 H 0.149 0.851 29 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.521 6.406 -10.887 13.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.017 3.983 3 C -0.171 4.171 4 C -0.198 4.198 5 C -0.135 4.135 6 N -0.201 5.201 7 C -0.337 4.337 8 C 0.044 3.956 9 C -0.504 4.504 10 H 0.093 0.907 11 C -0.172 4.172 12 N -0.479 5.479 13 Si 0.751 3.249 14 H -0.166 1.166 15 H -0.181 1.181 16 H -0.179 1.179 17 N -0.220 5.220 18 H 0.239 0.761 19 H 0.066 0.934 20 H 0.115 0.885 21 H 0.058 0.942 22 H 0.063 0.937 23 H 0.106 0.894 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.117 0.883 27 H 0.069 0.931 28 H 0.166 0.834 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.387 7.063 -10.692 13.901 hybrid contribution -0.336 -1.764 0.071 1.798 sum -5.723 5.299 -10.622 13.177 Atomic orbital electron populations 1.21894 0.93023 1.01375 1.03066 1.19058 0.95786 0.95661 0.87810 1.21550 1.00517 0.92806 1.02251 1.21930 1.01160 0.99643 0.97107 1.23144 1.10372 0.80281 0.99656 1.69290 1.15194 1.34276 1.01317 1.22276 1.21702 0.87855 1.01893 1.19112 0.96282 0.95891 0.84310 1.18457 1.26444 0.89901 1.15607 0.90674 1.26684 0.98651 0.94093 0.97796 1.69631 1.38289 0.99698 1.40282 0.86138 0.79663 0.79948 0.79165 1.16612 1.18077 1.17869 1.43600 1.54302 1.08512 1.15583 0.76138 0.93418 0.88484 0.94182 0.93739 0.89417 0.93250 0.94047 0.88259 0.93074 0.83397 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 8.46 71.98 0.61 -3.16 15 2 C 0.02 0.61 0.99 -52.93 -0.05 0.55 15 3 C -0.11 -3.23 8.00 71.98 0.58 -2.65 15 4 C -0.14 -3.78 8.33 71.98 0.60 -3.18 15 5 C 0.12 5.45 6.41 137.97 0.88 6.34 15 6 N -0.48 -23.79 10.42 -184.81 -1.93 -25.72 15 7 C -0.19 -10.12 11.98 84.85 1.02 -9.10 15 8 C 0.16 8.48 6.27 38.88 0.24 8.72 15 9 C -0.47 -26.66 9.92 23.16 0.23 -26.44 15 10 H 0.08 4.58 8.06 -2.91 -0.02 4.55 15 11 C 0.04 2.22 5.52 85.28 0.47 2.69 15 12 N -0.85 -45.98 13.93 21.85 0.30 -45.68 15 13 Si 0.93 38.86 24.67 68.60 1.69 40.55 15 14 H -0.24 -9.02 6.82 99.48 0.68 -8.34 15 15 H -0.26 -9.92 7.11 99.48 0.71 -9.21 15 16 H -0.25 -10.96 6.73 99.48 0.67 -10.29 15 17 N -0.60 -28.40 4.55 -178.77 -0.81 -29.21 15 18 H 0.40 17.15 3.78 -92.71 -0.35 16.80 15 19 H 0.05 1.43 8.14 -2.39 -0.02 1.41 15 20 H 0.10 1.91 8.14 -2.39 -0.02 1.89 15 21 H 0.04 1.16 8.14 -2.39 -0.02 1.14 15 22 H 0.04 1.36 8.14 -2.39 -0.02 1.34 15 23 H 0.09 1.78 8.14 -2.38 -0.02 1.76 15 24 H 0.05 1.54 8.06 -2.38 -0.02 1.52 15 25 H 0.04 1.14 7.61 -2.39 -0.02 1.12 15 26 H 0.10 1.89 8.14 -2.38 -0.02 1.87 15 27 H 0.05 1.45 8.14 -2.39 -0.02 1.43 15 28 H 0.15 7.48 8.06 -2.91 -0.02 7.45 15 29 H 0.29 14.23 8.30 -92.71 -0.77 13.46 15 Total: -1.00 -62.92 240.96 4.55 -58.37 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 0.71 Total: 27.91 kcal Atomic # 6 Polarization: -30.80 SS G_CDS: 4.58 Total: -26.23 kcal Atomic # 7 Polarization: -98.17 SS G_CDS: -2.43 Total: -100.61 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 1.69 Total: 40.55 kcal Total: -62.92 4.55 -58.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074340819.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.090 kcal (2) G-P(sol) polarization free energy of solvation -62.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds