Wall clock time and date at job start Mon Mar 30 2020 01:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20758 * 120.00407 * 2 1 4 4 C 1.50703 * 119.99662 * 180.02562 * 2 1 3 5 5 H 1.09007 * 109.63725 * 34.99726 * 4 2 1 6 6 C 1.53388 * 109.64071 * 274.58213 * 4 2 1 7 7 C 1.52974 * 108.45925 * 173.07732 * 6 4 2 8 8 C 1.50071 * 110.29080 * 49.12717 * 7 6 4 9 9 C 1.29437 * 124.07590 * 342.98715 * 8 7 6 10 10 C 1.50070 * 124.07370 * 0.48324 * 9 8 7 11 11 H 1.08996 * 109.35967 * 222.66521 * 10 9 8 12 12 C 1.50703 * 109.24695 * 103.00901 * 10 9 8 13 13 H 1.07999 * 120.00234 * 244.97039 * 12 10 9 14 14 C 1.37878 * 119.99729 * 64.97192 * 12 10 9 15 15 N 1.31522 * 120.00136 * 6.47014 * 14 12 10 16 16 Si 1.86804 * 120.00013 * 186.47269 * 14 12 10 17 17 H 1.48499 * 109.47392 * 94.98695 * 16 14 12 18 18 H 1.48494 * 109.47152 * 214.99078 * 16 14 12 19 19 H 1.48497 * 109.46857 * 334.98752 * 16 14 12 20 20 H 1.08999 * 109.47682 * 179.97438 * 1 2 3 21 21 H 1.09007 * 109.46814 * 59.99172 * 1 2 3 22 22 H 1.09000 * 109.47182 * 299.99837 * 1 2 3 23 23 H 1.09001 * 109.63944 * 292.55863 * 6 4 2 24 24 H 1.08993 * 109.64506 * 53.19267 * 6 4 2 25 25 H 1.09000 * 109.17958 * 288.94909 * 7 6 4 26 26 H 1.09003 * 109.28320 * 169.38016 * 7 6 4 27 27 H 1.07995 * 117.96263 * 162.99906 * 8 7 6 28 28 H 1.07994 * 117.96805 * 180.46706 * 9 8 7 29 29 H 0.97002 * 119.99793 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2604 -1.3052 -0.0006 5 1 1.7152 -2.0426 -0.5897 6 6 2.4182 -1.8100 1.4392 7 6 3.0288 -3.2120 1.3967 8 6 4.2349 -3.2275 0.5038 9 6 4.5039 -2.3091 -0.3678 10 6 3.6526 -1.0952 -0.6000 11 1 3.5615 -0.9174 -1.6715 12 6 4.3019 0.0988 0.0511 13 1 3.8135 0.5961 0.8761 14 6 5.5194 0.5563 -0.4065 15 7 6.0538 0.0338 -1.4886 16 14 6.4099 1.9185 0.5107 17 1 7.3886 1.3219 1.4548 18 1 7.1243 2.7846 -0.4612 19 1 5.4246 2.7318 1.2675 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5140 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 3.0798 -1.1423 1.9911 24 1 1.4426 -1.8469 1.9236 25 1 2.2876 -3.9140 1.0148 26 1 3.3213 -3.5079 2.4042 27 1 4.9211 -4.0565 0.5940 28 1 5.3965 -2.4233 -0.9648 29 1 6.9105 0.3554 -1.8103 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075545753.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:58 Heat of formation + Delta-G solvation = -28.817667 kcal Electronic energy + Delta-G solvation = -12533.140348 eV Core-core repulsion = 10421.445619 eV Total energy + Delta-G solvation = -2111.694729 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.105 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.17413 -36.56612 -32.58686 -30.88399 -29.46199 -28.96173 -24.89809 -21.99827 -21.74103 -18.52987 -17.55201 -15.78641 -15.05252 -14.63202 -14.15076 -14.04617 -13.74350 -12.91504 -12.53969 -12.06243 -11.99378 -11.58892 -11.37326 -11.35472 -10.82435 -10.79417 -10.40132 -10.20113 -9.62322 -9.40107 -9.10644 -8.25848 -8.04649 -7.66670 -5.88246 -3.80900 2.92507 3.39863 3.46854 3.52793 3.64750 4.59551 4.88662 5.44525 5.58875 5.62817 5.68621 5.77317 5.90244 6.05083 6.22383 6.32002 6.43094 6.49917 6.54606 6.64996 6.80359 7.00229 7.48142 7.59646 7.94356 8.10263 8.21775 8.48529 8.56951 9.17438 9.75433 11.22332 Molecular weight = 194.10amu Principal moments of inertia in cm(-1) A = 0.031125 B = 0.016879 C = 0.012813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.380289 B = 1658.500524 C = 2184.699901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.345 3.655 3 O -0.414 6.414 4 C -0.126 4.126 5 H 0.070 0.930 6 C -0.099 4.099 7 C -0.066 4.066 8 C -0.245 4.245 9 C -0.061 4.061 10 C 0.071 3.929 11 H 0.040 0.960 12 C -0.470 4.470 13 H 0.073 0.927 14 C 0.053 3.947 15 N -0.902 5.902 16 Si 0.889 3.111 17 H -0.285 1.285 18 H -0.289 1.289 19 H -0.274 1.274 20 H 0.071 0.929 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.425 -4.393 3.520 10.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.217 3.783 3 O -0.283 6.283 4 C -0.145 4.145 5 H 0.088 0.912 6 C -0.136 4.136 7 C -0.103 4.103 8 C -0.263 4.263 9 C -0.080 4.080 10 C 0.053 3.947 11 H 0.058 0.942 12 C -0.508 4.508 13 H 0.091 0.909 14 C -0.146 4.146 15 N -0.542 5.542 16 Si 0.717 3.283 17 H -0.211 1.211 18 H -0.216 1.216 19 H -0.198 1.198 20 H 0.091 0.909 21 H 0.099 0.901 22 H 0.097 0.903 23 H 0.094 0.906 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.116 0.884 29 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.936 -3.788 3.409 9.432 hybrid contribution 0.672 0.575 0.360 0.955 sum -7.264 -3.213 3.770 8.792 Atomic orbital electron populations 1.22352 0.97004 1.03360 1.03469 1.24444 0.90143 0.91505 0.72187 1.90502 1.70542 1.34859 1.32436 1.21776 0.99747 0.95017 0.97986 0.91204 1.21387 0.99532 0.97293 0.95405 1.20134 0.95972 0.96027 0.98181 1.21528 1.00373 1.01531 1.02871 1.22474 0.98707 0.92394 0.94416 1.17774 0.87323 0.92582 0.97028 0.94208 1.21209 1.02871 1.09912 1.16782 0.90879 1.24947 0.97779 0.96864 0.95017 1.69970 1.18395 1.43752 1.22107 0.86604 0.79695 0.82271 0.79695 1.21117 1.21553 1.19834 0.90948 0.90122 0.90266 0.90635 0.93364 0.92972 0.92769 0.90269 0.88350 0.93382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.86 10.33 36.01 0.37 -2.48 15 2 C 0.35 6.80 6.29 -29.03 -0.18 6.62 15 3 O -0.41 -10.09 13.75 6.00 0.08 -10.00 15 4 C -0.13 -2.53 2.20 -91.56 -0.20 -2.73 15 5 H 0.07 1.24 8.13 -51.92 -0.42 0.82 15 6 C -0.10 -1.80 5.24 -26.54 -0.14 -1.94 15 7 C -0.07 -1.15 6.11 -28.20 -0.17 -1.32 15 8 C -0.24 -5.03 9.81 -35.90 -0.35 -5.38 15 9 C -0.06 -1.46 8.44 -35.90 -0.30 -1.76 15 10 C 0.07 1.78 2.04 -93.22 -0.19 1.59 15 11 H 0.04 1.10 8.11 -51.93 -0.42 0.68 15 12 C -0.47 -13.14 5.86 -34.44 -0.20 -13.34 15 13 H 0.07 2.09 5.55 -52.49 -0.29 1.80 15 14 C 0.05 1.54 5.26 -17.82 -0.09 1.45 15 15 N -0.90 -26.78 12.48 55.43 0.69 -26.09 15 16 Si 0.89 22.72 29.54 -169.99 -5.02 17.70 15 17 H -0.28 -7.16 7.11 56.52 0.40 -6.76 15 18 H -0.29 -7.36 7.11 56.52 0.40 -6.96 15 19 H -0.27 -7.02 7.11 56.52 0.40 -6.62 15 20 H 0.07 0.84 8.00 -51.93 -0.42 0.42 15 21 H 0.08 1.06 8.14 -51.93 -0.42 0.63 15 22 H 0.08 1.01 8.14 -51.93 -0.42 0.58 15 23 H 0.07 1.57 7.04 -51.93 -0.37 1.20 15 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 15 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 27 H 0.08 1.52 8.06 -52.49 -0.42 1.09 15 28 H 0.10 2.54 7.61 -52.49 -0.40 2.14 15 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 LS Contribution 240.18 15.07 3.62 3.62 Total: -1.00 -30.85 240.18 -6.08 -36.92 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -3.99 Total: -2.86 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -1.46 Total: -19.30 kcal Atomic # 7 Polarization: -26.78 SS G_CDS: 0.69 Total: -26.09 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -30.85 -6.08 -36.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075545753.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.106 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds