Wall clock time and date at job start Mon Mar 30 2020 01:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20758 * 120.00407 * 2 1 4 4 C 1.50703 * 119.99662 * 180.02562 * 2 1 3 5 5 H 1.09007 * 109.63725 * 34.99726 * 4 2 1 6 6 C 1.53388 * 109.64071 * 274.58213 * 4 2 1 7 7 C 1.52974 * 108.45925 * 173.07732 * 6 4 2 8 8 C 1.50071 * 110.29080 * 49.12717 * 7 6 4 9 9 C 1.29437 * 124.07590 * 342.98715 * 8 7 6 10 10 C 1.50070 * 124.07370 * 0.48324 * 9 8 7 11 11 H 1.08996 * 109.35967 * 222.66521 * 10 9 8 12 12 C 1.50703 * 109.24695 * 103.00901 * 10 9 8 13 13 H 1.07999 * 120.00234 * 244.97039 * 12 10 9 14 14 C 1.37878 * 119.99729 * 64.97192 * 12 10 9 15 15 N 1.31522 * 120.00136 * 6.47014 * 14 12 10 16 16 Si 1.86804 * 120.00013 * 186.47269 * 14 12 10 17 17 H 1.48499 * 109.47392 * 94.98695 * 16 14 12 18 18 H 1.48494 * 109.47152 * 214.99078 * 16 14 12 19 19 H 1.48497 * 109.46857 * 334.98752 * 16 14 12 20 20 H 1.08999 * 109.47682 * 179.97438 * 1 2 3 21 21 H 1.09007 * 109.46814 * 59.99172 * 1 2 3 22 22 H 1.09000 * 109.47182 * 299.99837 * 1 2 3 23 23 H 1.09001 * 109.63944 * 292.55863 * 6 4 2 24 24 H 1.08993 * 109.64506 * 53.19267 * 6 4 2 25 25 H 1.09000 * 109.17958 * 288.94909 * 7 6 4 26 26 H 1.09003 * 109.28320 * 169.38016 * 7 6 4 27 27 H 1.07995 * 117.96263 * 162.99906 * 8 7 6 28 28 H 1.07994 * 117.96805 * 180.46706 * 9 8 7 29 29 H 0.97002 * 119.99793 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2604 -1.3052 -0.0006 5 1 1.7152 -2.0426 -0.5897 6 6 2.4182 -1.8100 1.4392 7 6 3.0288 -3.2120 1.3967 8 6 4.2349 -3.2275 0.5038 9 6 4.5039 -2.3091 -0.3678 10 6 3.6526 -1.0952 -0.6000 11 1 3.5615 -0.9174 -1.6715 12 6 4.3019 0.0988 0.0511 13 1 3.8135 0.5961 0.8761 14 6 5.5194 0.5563 -0.4065 15 7 6.0538 0.0338 -1.4886 16 14 6.4099 1.9185 0.5107 17 1 7.3886 1.3219 1.4548 18 1 7.1243 2.7846 -0.4612 19 1 5.4246 2.7318 1.2675 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5140 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 3.0798 -1.1423 1.9911 24 1 1.4426 -1.8469 1.9236 25 1 2.2876 -3.9140 1.0148 26 1 3.3213 -3.5079 2.4042 27 1 4.9211 -4.0565 0.5940 28 1 5.3965 -2.4233 -0.9648 29 1 6.9105 0.3554 -1.8103 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075545753.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:58 Heat of formation + Delta-G solvation = -47.918428 kcal Electronic energy + Delta-G solvation = -12533.968619 eV Core-core repulsion = 10421.445619 eV Total energy + Delta-G solvation = -2112.523000 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.105 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.80878 -38.23202 -34.64177 -32.46393 -31.24610 -30.33093 -26.85586 -23.58642 -23.46207 -20.07441 -19.46542 -17.52276 -16.91849 -16.45632 -15.87683 -15.63554 -15.23965 -14.47175 -14.31767 -13.74728 -13.59088 -13.10382 -12.84810 -12.78090 -12.76580 -12.59365 -12.25832 -12.09265 -11.37361 -11.21392 -10.81294 -10.41314 -9.71743 -9.46153 -8.05933 -6.02455 1.34135 1.35320 1.41085 1.47038 1.86487 2.47602 3.27349 3.49313 4.11890 4.19773 4.32357 4.51328 4.68613 4.75373 4.79877 4.92074 4.97107 5.02798 5.15785 5.18522 5.35689 5.52108 5.55280 5.73611 5.95143 6.16901 6.33405 6.48386 6.99870 7.10936 7.55198 9.03749 Molecular weight = 194.10amu Principal moments of inertia in cm(-1) A = 0.031125 B = 0.016879 C = 0.012813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.380289 B = 1658.500524 C = 2184.699901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.342 3.658 3 O -0.476 6.476 4 C -0.130 4.130 5 H 0.100 0.900 6 C -0.095 4.095 7 C -0.068 4.068 8 C -0.209 4.209 9 C -0.105 4.105 10 C 0.069 3.931 11 H -0.007 1.007 12 C -0.465 4.465 13 H 0.063 0.937 14 C -0.005 4.005 15 N -0.934 5.934 16 Si 0.941 3.059 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.276 1.276 20 H 0.106 0.894 21 H 0.090 0.910 22 H 0.097 0.903 23 H 0.041 0.959 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.685 -5.848 5.341 13.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.218 3.782 3 O -0.350 6.350 4 C -0.149 4.149 5 H 0.118 0.882 6 C -0.132 4.132 7 C -0.104 4.104 8 C -0.228 4.228 9 C -0.124 4.124 10 C 0.050 3.950 11 H 0.011 0.989 12 C -0.503 4.503 13 H 0.081 0.919 14 C -0.200 4.200 15 N -0.577 5.577 16 Si 0.769 3.231 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.201 1.201 20 H 0.125 0.875 21 H 0.109 0.891 22 H 0.116 0.884 23 H 0.060 0.940 24 H 0.112 0.888 25 H 0.108 0.892 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.080 0.920 29 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.215 -5.265 5.244 12.632 hybrid contribution 1.314 0.928 -0.196 1.620 sum -8.901 -4.337 5.048 11.114 Atomic orbital electron populations 1.22275 0.91596 1.06141 1.04768 1.25212 0.93060 0.90235 0.69668 1.90481 1.72488 1.36513 1.35556 1.21843 0.96952 0.96576 0.99552 0.88210 1.21393 1.01329 0.96904 0.93597 1.20287 0.95037 0.96328 0.98774 1.21976 1.01024 0.99628 1.00133 1.22129 0.98575 0.94352 0.97380 1.17639 0.90760 0.92186 0.94370 0.98852 1.21489 1.02393 1.10587 1.15859 0.91891 1.25679 0.99009 0.99288 0.96026 1.70100 1.18671 1.45322 1.23569 0.85774 0.78657 0.80004 0.78697 1.20158 1.21390 1.20063 0.87471 0.89122 0.88434 0.93982 0.88790 0.89171 0.90181 0.88665 0.92028 0.93751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.56 10.33 71.24 0.74 -3.82 15 2 C 0.34 12.98 6.29 29.10 0.18 13.16 15 3 O -0.48 -23.58 13.75 -1.45 -0.02 -23.60 15 4 C -0.13 -4.98 2.20 -11.40 -0.03 -5.01 15 5 H 0.10 3.20 8.13 -2.38 -0.02 3.19 15 6 C -0.09 -3.11 5.24 30.72 0.16 -2.95 15 7 C -0.07 -2.02 6.11 29.64 0.18 -1.84 15 8 C -0.21 -8.16 9.81 27.04 0.27 -7.90 15 9 C -0.11 -5.13 8.44 27.04 0.23 -4.91 15 10 C 0.07 3.54 2.04 -12.48 -0.03 3.51 15 11 H -0.01 -0.39 8.11 -2.39 -0.02 -0.41 15 12 C -0.46 -26.93 5.86 25.60 0.15 -26.78 15 13 H 0.06 3.72 5.55 -2.91 -0.02 3.71 15 14 C 0.00 -0.27 5.26 84.65 0.45 0.17 15 15 N -0.93 -58.33 12.48 21.45 0.27 -58.06 15 16 Si 0.94 48.17 29.54 68.60 2.03 50.19 15 17 H -0.28 -13.55 7.11 99.48 0.71 -12.84 15 18 H -0.29 -14.51 7.11 99.48 0.71 -13.80 15 19 H -0.28 -14.04 7.11 99.48 0.71 -13.33 15 20 H 0.11 1.83 8.00 -2.39 -0.02 1.81 15 21 H 0.09 2.06 8.14 -2.38 -0.02 2.04 15 22 H 0.10 2.05 8.14 -2.39 -0.02 2.03 15 23 H 0.04 1.66 7.04 -2.39 -0.02 1.65 15 24 H 0.09 2.27 8.14 -2.39 -0.02 2.25 15 25 H 0.09 2.16 8.14 -2.39 -0.02 2.14 15 26 H 0.08 2.08 8.14 -2.39 -0.02 2.06 15 27 H 0.10 3.39 8.06 -2.91 -0.02 3.37 15 28 H 0.06 3.37 7.61 -2.91 -0.02 3.35 15 29 H 0.25 15.20 8.31 -92.71 -0.77 14.43 15 Total: -1.00 -71.89 240.18 5.69 -66.20 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: 1.12 Total: 1.64 kcal Atomic # 6 Polarization: -38.66 SS G_CDS: 2.30 Total: -36.36 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: 0.27 Total: -58.06 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.02 Total: -23.60 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.03 Total: 50.19 kcal Total: -71.89 5.69 -66.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075545753.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.280 kcal (2) G-P(sol) polarization free energy of solvation -71.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds