Wall clock time and date at job start Mon Mar 30 2020 01:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46915 * 2 1 4 4 C 1.53003 * 109.47366 * 240.00304 * 2 1 3 5 5 C 1.50693 * 109.47574 * 120.00233 * 2 1 3 6 6 C 1.35673 * 126.32261 * 359.97260 * 5 2 1 7 7 O 1.34241 * 109.21578 * 180.02562 * 6 5 2 8 8 C 1.35087 * 109.39036 * 0.02562 * 7 6 5 9 9 C 1.39745 * 126.20923 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00205 * 186.21888 * 9 8 7 11 11 C 1.40162 * 119.99517 * 6.22161 * 9 8 7 12 12 N 1.30805 * 119.99748 * 183.77922 * 11 9 8 13 13 Si 1.86795 * 120.00282 * 3.78223 * 11 9 8 14 14 H 1.48497 * 109.47430 * 180.02562 * 13 11 9 15 15 H 1.48500 * 109.46987 * 299.99674 * 13 11 9 16 16 H 1.48497 * 109.47370 * 59.99798 * 13 11 9 17 17 C 1.39556 * 107.58906 * 0.24264 * 8 7 6 18 18 H 1.08997 * 109.47343 * 299.99522 * 1 2 3 19 19 H 1.09003 * 109.47394 * 59.99904 * 1 2 3 20 20 H 1.09001 * 109.46805 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47027 * 180.02562 * 3 2 1 22 22 H 1.08993 * 109.47196 * 300.00221 * 3 2 1 23 23 H 1.08997 * 109.46725 * 60.00099 * 3 2 1 24 24 H 1.09001 * 109.47092 * 299.99743 * 4 2 1 25 25 H 1.09003 * 109.47034 * 59.99572 * 4 2 1 26 26 H 1.08995 * 109.47309 * 180.02562 * 4 2 1 27 27 H 1.08002 * 125.39051 * 0.02562 * 6 5 2 28 28 H 0.97003 * 120.00052 * 354.82564 * 12 11 9 29 29 H 1.08001 * 126.77329 * 179.76028 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2303 6 6 1.2698 -1.2710 2.2023 7 8 2.0698 -1.8097 3.1360 8 6 3.3603 -1.6098 2.7904 9 6 4.4822 -2.0256 3.5124 10 1 5.4701 -1.7254 3.1955 11 6 4.3254 -2.8323 4.6478 12 7 5.3682 -3.1604 5.3661 13 14 2.6272 -3.4388 5.1354 14 1 2.7310 -4.2670 6.3636 15 1 1.7423 -2.2753 5.3969 16 1 2.0581 -4.2557 4.0336 17 6 3.3700 -0.9073 1.5846 18 1 -0.3634 0.5137 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 3.1300 1.4426 -0.0005 22 1 1.6766 1.9564 -0.8899 23 1 1.6766 1.9563 0.8900 24 1 1.6767 -1.7489 -1.2493 25 1 1.6766 -0.2073 -2.1393 26 1 3.1300 -0.7216 -1.2490 27 1 0.1900 -1.2822 2.2218 28 1 6.2579 -2.9092 5.0724 29 1 4.2395 -0.5824 1.0325 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075545786.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:33 Heat of formation + Delta-G solvation = -31.064832 kcal Electronic energy + Delta-G solvation = -12228.513588 eV Core-core repulsion = 10116.721416 eV Total energy + Delta-G solvation = -2111.792173 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.105 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.73821 -36.57186 -33.69276 -30.56166 -29.08900 -27.08614 -26.78395 -24.11903 -21.41458 -19.50207 -18.95988 -16.96342 -15.99382 -14.51569 -14.10132 -13.73331 -13.56781 -13.55739 -13.07426 -12.47316 -11.92810 -11.81775 -11.42412 -11.27580 -11.06615 -10.94161 -10.54164 -10.23763 -10.07062 -9.90938 -9.53487 -9.36889 -8.16151 -7.44370 -7.26168 -4.50268 3.03950 3.27439 3.52404 3.56783 3.99926 4.09865 4.90665 5.15676 5.31832 5.36004 5.49797 5.92976 5.96366 6.00347 6.16464 6.22399 6.29991 6.37408 6.49030 6.57346 6.66610 6.80200 7.08447 7.34494 7.44676 7.54459 7.92632 8.10904 8.42183 8.54473 8.98473 10.00488 Molecular weight = 194.10amu Principal moments of inertia in cm(-1) A = 0.060840 B = 0.011100 C = 0.010047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.113922 B = 2521.833829 C = 2786.297975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.000 4.000 3 C -0.130 4.130 4 C -0.130 4.130 5 C -0.108 4.108 6 C -0.183 4.183 7 O -0.211 6.211 8 C 0.182 3.818 9 C -0.496 4.496 10 H 0.096 0.904 11 C 0.042 3.958 12 N -0.816 5.816 13 Si 1.078 2.922 14 H -0.286 1.286 15 H -0.264 1.264 16 H -0.272 1.272 17 C -0.380 4.380 18 H 0.054 0.946 19 H 0.048 0.952 20 H 0.054 0.946 21 H 0.054 0.946 22 H 0.045 0.955 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.166 0.834 28 H 0.285 0.715 29 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.910 3.640 -6.878 10.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.000 4.000 3 C -0.187 4.187 4 C -0.187 4.187 5 C -0.110 4.110 6 C -0.247 4.247 7 O -0.113 6.113 8 C 0.131 3.869 9 C -0.526 4.526 10 H 0.114 0.886 11 C -0.177 4.177 12 N -0.440 5.440 13 Si 0.904 3.096 14 H -0.213 1.213 15 H -0.190 1.190 16 H -0.198 1.198 17 C -0.401 4.401 18 H 0.073 0.927 19 H 0.067 0.933 20 H 0.073 0.927 21 H 0.074 0.926 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.183 0.817 28 H 0.097 0.903 29 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.735 2.664 -5.468 9.840 hybrid contribution 1.127 1.026 -1.399 2.069 sum -6.608 3.690 -6.867 10.219 Atomic orbital electron populations 1.21861 0.95327 1.01463 1.00914 1.18874 0.94156 0.94261 0.92701 1.21775 1.01264 0.95268 1.00430 1.21775 1.01277 0.99909 0.95786 1.19596 0.94021 1.01618 0.95725 1.22864 0.94409 1.13490 0.93899 1.83835 1.17014 1.65892 1.44523 1.19854 0.81156 0.93214 0.92709 1.19750 0.92325 1.29543 1.10984 0.88624 1.27341 1.06567 0.92129 0.91710 1.70574 1.00840 1.37262 1.35332 0.83306 0.72033 0.77841 0.76390 1.21349 1.18999 1.19804 1.20924 0.94987 1.21931 1.02230 0.92719 0.93336 0.92718 0.92644 0.93633 0.92956 0.92948 0.93627 0.92631 0.81677 0.90344 0.87132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 7.38 37.16 0.27 -1.78 15 2 C 0.00 0.00 0.95 -155.66 -0.15 -0.14 15 3 C -0.13 -2.09 8.36 37.16 0.31 -1.78 15 4 C -0.13 -2.09 8.37 37.16 0.31 -1.78 15 5 C -0.11 -2.41 4.73 -104.97 -0.50 -2.91 15 6 C -0.18 -4.22 11.05 29.81 0.33 -3.89 15 7 O -0.21 -5.55 6.08 3.67 0.02 -5.52 15 8 C 0.18 4.98 6.50 -38.53 -0.25 4.73 15 9 C -0.50 -14.01 9.76 -38.30 -0.37 -14.38 15 10 H 0.10 2.73 8.06 -52.49 -0.42 2.30 15 11 C 0.04 1.15 5.52 -17.27 -0.10 1.05 15 12 N -0.82 -22.42 13.65 55.56 0.76 -21.66 15 13 Si 1.08 25.77 25.96 -169.99 -4.41 21.36 15 14 H -0.29 -6.51 7.11 56.52 0.40 -6.11 15 15 H -0.26 -6.26 6.79 56.52 0.38 -5.88 15 16 H -0.27 -6.45 7.11 56.52 0.40 -6.04 15 17 C -0.38 -9.62 10.42 -38.52 -0.40 -10.02 15 18 H 0.05 0.80 7.94 -51.93 -0.41 0.39 15 19 H 0.05 0.61 8.14 -51.93 -0.42 0.19 15 20 H 0.05 0.80 7.94 -51.93 -0.41 0.39 15 21 H 0.05 0.93 8.03 -51.93 -0.42 0.52 15 22 H 0.04 0.61 8.14 -51.93 -0.42 0.18 15 23 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 26 H 0.05 0.93 8.04 -51.93 -0.42 0.52 15 27 H 0.17 3.21 7.27 -52.49 -0.38 2.83 15 28 H 0.29 7.55 8.73 -40.82 -0.36 7.19 15 29 H 0.11 2.72 8.06 -52.49 -0.42 2.30 15 LS Contribution 244.51 15.07 3.68 3.68 Total: -1.00 -28.58 244.51 -4.65 -33.23 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -4.17 Total: -0.19 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: -0.54 Total: -30.90 kcal Atomic # 7 Polarization: -22.42 SS G_CDS: 0.76 Total: -21.66 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: 0.02 Total: -5.52 kcal Atomic # 14 Polarization: 25.77 SS G_CDS: -4.41 Total: 21.36 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -28.58 -4.65 -33.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075545786.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.167 kcal (2) G-P(sol) polarization free energy of solvation -28.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds