Wall clock time and date at job start Mon Mar 30 2020 01:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46915 * 2 1 4 4 C 1.53003 * 109.47366 * 240.00304 * 2 1 3 5 5 C 1.50693 * 109.47574 * 120.00233 * 2 1 3 6 6 C 1.35673 * 126.32261 * 359.97260 * 5 2 1 7 7 O 1.34241 * 109.21578 * 180.02562 * 6 5 2 8 8 C 1.35087 * 109.39036 * 0.02562 * 7 6 5 9 9 C 1.39745 * 126.20923 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00205 * 186.21888 * 9 8 7 11 11 C 1.40162 * 119.99517 * 6.22161 * 9 8 7 12 12 N 1.30805 * 119.99748 * 183.77922 * 11 9 8 13 13 Si 1.86795 * 120.00282 * 3.78223 * 11 9 8 14 14 H 1.48497 * 109.47430 * 180.02562 * 13 11 9 15 15 H 1.48500 * 109.46987 * 299.99674 * 13 11 9 16 16 H 1.48497 * 109.47370 * 59.99798 * 13 11 9 17 17 C 1.39556 * 107.58906 * 0.24264 * 8 7 6 18 18 H 1.08997 * 109.47343 * 299.99522 * 1 2 3 19 19 H 1.09003 * 109.47394 * 59.99904 * 1 2 3 20 20 H 1.09001 * 109.46805 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47027 * 180.02562 * 3 2 1 22 22 H 1.08993 * 109.47196 * 300.00221 * 3 2 1 23 23 H 1.08997 * 109.46725 * 60.00099 * 3 2 1 24 24 H 1.09001 * 109.47092 * 299.99743 * 4 2 1 25 25 H 1.09003 * 109.47034 * 59.99572 * 4 2 1 26 26 H 1.08995 * 109.47309 * 180.02562 * 4 2 1 27 27 H 1.08002 * 125.39051 * 0.02562 * 6 5 2 28 28 H 0.97003 * 120.00052 * 354.82564 * 12 11 9 29 29 H 1.08001 * 126.77329 * 179.76028 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2303 6 6 1.2698 -1.2710 2.2023 7 8 2.0698 -1.8097 3.1360 8 6 3.3603 -1.6098 2.7904 9 6 4.4822 -2.0256 3.5124 10 1 5.4701 -1.7254 3.1955 11 6 4.3254 -2.8323 4.6478 12 7 5.3682 -3.1604 5.3661 13 14 2.6272 -3.4388 5.1354 14 1 2.7310 -4.2670 6.3636 15 1 1.7423 -2.2753 5.3969 16 1 2.0581 -4.2557 4.0336 17 6 3.3700 -0.9073 1.5846 18 1 -0.3634 0.5137 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 3.1300 1.4426 -0.0005 22 1 1.6766 1.9564 -0.8899 23 1 1.6766 1.9563 0.8900 24 1 1.6767 -1.7489 -1.2493 25 1 1.6766 -0.2073 -2.1393 26 1 3.1300 -0.7216 -1.2490 27 1 0.1900 -1.2822 2.2218 28 1 6.2579 -2.9092 5.0724 29 1 4.2395 -0.5824 1.0325 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075545786.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:33 Heat of formation + Delta-G solvation = -47.605986 kcal Electronic energy + Delta-G solvation = -12229.230867 eV Core-core repulsion = 10116.721416 eV Total energy + Delta-G solvation = -2112.509451 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.105 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.69488 -38.00584 -35.76633 -32.47254 -31.01831 -28.36760 -28.04005 -26.03989 -23.08166 -21.51856 -20.87842 -18.66045 -17.87071 -16.47254 -15.86732 -15.59389 -15.01219 -14.85470 -14.76543 -14.42424 -13.36735 -13.13530 -13.09113 -12.89053 -12.68060 -12.50979 -11.93749 -11.83242 -11.76314 -11.48663 -11.45320 -11.29306 -10.05881 -9.51431 -9.30893 -6.60978 1.06029 1.35643 1.64697 1.67965 2.08547 2.17240 2.95501 3.06316 3.94686 4.05755 4.23343 4.54182 4.67243 4.77272 4.82863 4.94890 5.00164 5.06443 5.07129 5.17014 5.22595 5.28459 5.37703 5.52781 5.53461 5.65659 5.90334 6.12961 6.43155 6.48734 6.95304 7.89141 Molecular weight = 194.10amu Principal moments of inertia in cm(-1) A = 0.060840 B = 0.011100 C = 0.010047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.113922 B = 2521.833829 C = 2786.297975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.005 4.005 3 C -0.128 4.128 4 C -0.128 4.128 5 C -0.110 4.110 6 C -0.182 4.182 7 O -0.221 6.221 8 C 0.151 3.849 9 C -0.527 4.527 10 H 0.074 0.926 11 C 0.012 3.988 12 N -0.833 5.833 13 Si 1.111 2.889 14 H -0.268 1.268 15 H -0.261 1.261 16 H -0.270 1.270 17 C -0.386 4.386 18 H 0.055 0.945 19 H 0.078 0.922 20 H 0.056 0.944 21 H 0.037 0.963 22 H 0.079 0.921 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.079 0.921 26 H 0.037 0.963 27 H 0.206 0.794 28 H 0.281 0.719 29 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.496 4.258 -8.175 13.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.005 4.005 3 C -0.185 4.185 4 C -0.186 4.186 5 C -0.111 4.111 6 C -0.245 4.245 7 O -0.123 6.123 8 C 0.100 3.900 9 C -0.557 4.557 10 H 0.092 0.908 11 C -0.203 4.203 12 N -0.458 5.458 13 Si 0.933 3.067 14 H -0.194 1.194 15 H -0.187 1.187 16 H -0.195 1.195 17 C -0.407 4.407 18 H 0.074 0.926 19 H 0.096 0.904 20 H 0.075 0.925 21 H 0.056 0.944 22 H 0.098 0.902 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.098 0.902 26 H 0.056 0.944 27 H 0.223 0.777 28 H 0.092 0.908 29 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.299 3.287 -6.767 12.754 hybrid contribution 1.894 0.933 -1.142 2.400 sum -8.405 4.219 -7.909 12.288 Atomic orbital electron populations 1.21843 0.92702 1.02136 1.02556 1.19078 0.96309 0.94407 0.90730 1.21761 1.00212 0.94685 1.01887 1.21762 1.00224 0.99987 0.96585 1.20135 0.92346 1.01147 0.97478 1.23815 0.95997 1.11735 0.92924 1.83832 1.16701 1.66175 1.45607 1.19936 0.81610 0.94772 0.93700 1.19726 0.92050 1.31407 1.12526 0.90817 1.28337 1.08784 0.91765 0.91423 1.70614 1.00917 1.38432 1.35835 0.82924 0.69054 0.77830 0.76926 1.19392 1.18687 1.19538 1.21194 0.96726 1.21123 1.01614 0.92559 0.90355 0.92533 0.94384 0.90198 0.93490 0.93454 0.90193 0.94371 0.77736 0.90810 0.87502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 7.38 71.98 0.53 -2.84 15 2 C -0.01 -0.16 0.95 -52.93 -0.05 -0.21 15 3 C -0.13 -3.74 8.36 71.98 0.60 -3.13 15 4 C -0.13 -3.74 8.37 71.98 0.60 -3.13 15 5 C -0.11 -4.69 4.73 -20.09 -0.09 -4.79 15 6 C -0.18 -7.93 11.05 67.23 0.74 -7.18 15 7 O -0.22 -11.40 6.08 -9.77 -0.06 -11.46 15 8 C 0.15 8.37 6.50 22.95 0.15 8.52 15 9 C -0.53 -30.84 9.76 23.10 0.23 -30.61 15 10 H 0.07 4.47 8.06 -2.91 -0.02 4.44 15 11 C 0.01 0.66 5.52 85.31 0.47 1.13 15 12 N -0.83 -46.85 13.65 21.87 0.30 -46.55 15 13 Si 1.11 51.79 25.96 68.60 1.78 53.57 15 14 H -0.27 -11.55 7.11 99.48 0.71 -10.85 15 15 H -0.26 -11.93 6.79 99.48 0.68 -11.25 15 16 H -0.27 -12.33 7.11 99.48 0.71 -11.62 15 17 C -0.39 -19.61 10.42 22.96 0.24 -19.37 15 18 H 0.06 1.39 7.94 -2.39 -0.02 1.37 15 19 H 0.08 1.52 8.14 -2.39 -0.02 1.50 15 20 H 0.06 1.39 7.94 -2.39 -0.02 1.37 15 21 H 0.04 1.21 8.03 -2.38 -0.02 1.19 15 22 H 0.08 1.78 8.14 -2.39 -0.02 1.76 15 23 H 0.05 1.40 8.14 -2.39 -0.02 1.38 15 24 H 0.05 1.41 8.14 -2.39 -0.02 1.39 15 25 H 0.08 1.78 8.14 -2.39 -0.02 1.76 15 26 H 0.04 1.22 8.04 -2.39 -0.02 1.20 15 27 H 0.21 7.09 7.27 -2.91 -0.02 7.07 15 28 H 0.28 15.48 8.73 -92.71 -0.81 14.67 15 29 H 0.11 5.38 8.06 -2.91 -0.02 5.36 15 Total: -1.00 -61.82 244.51 6.48 -55.34 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 1.04 Total: 10.74 kcal Atomic # 6 Polarization: -65.04 SS G_CDS: 3.42 Total: -61.62 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 0.30 Total: -46.55 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.06 Total: -11.46 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 1.78 Total: 53.57 kcal Total: -61.82 6.48 -55.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075545786.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.731 kcal (2) G-P(sol) polarization free energy of solvation -61.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds