Wall clock time and date at job start Mon Mar 30 2020 01:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.54811 * 2 1 4 4 C 1.52800 * 109.54345 * 120.18417 * 2 1 3 5 5 C 1.49986 * 111.16331 * 172.70607 * 4 2 1 6 6 C 1.32740 * 123.18917 * 338.05252 * 5 4 2 7 7 C 1.50699 * 119.68970 * 180.43502 * 6 5 4 8 8 C 1.50695 * 109.47433 * 95.00254 * 7 6 5 9 9 H 1.07999 * 119.99668 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00331 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99899 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99932 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47142 * 59.99767 * 12 10 8 14 14 H 1.48503 * 109.46961 * 179.97438 * 12 10 8 15 15 H 1.48492 * 109.46938 * 299.99623 * 12 10 8 16 16 C 1.46666 * 120.61479 * 0.41360 * 6 5 4 17 17 O 1.21329 * 121.12684 * 168.57000 * 16 6 5 18 18 C 1.51478 * 117.74956 * 348.61647 * 16 6 5 19 19 H 1.08996 * 109.47366 * 300.00575 * 1 2 3 20 20 H 1.09011 * 109.46895 * 59.99918 * 1 2 3 21 21 H 1.08991 * 109.47509 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.13980 * 293.13674 * 4 2 1 23 23 H 1.08996 * 109.14325 * 52.32587 * 4 2 1 24 24 H 1.07992 * 118.40183 * 158.03432 * 5 4 2 25 25 H 1.09001 * 109.47311 * 215.00403 * 7 6 5 26 26 H 1.09002 * 109.47596 * 335.00103 * 7 6 5 27 27 H 0.97001 * 119.99958 * 180.02562 * 11 10 8 28 28 H 1.09002 * 109.87056 * 282.45017 * 18 16 6 29 29 H 1.08997 * 109.89534 * 161.34565 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0411 -0.7240 1.2447 5 6 3.5297 -0.9007 1.1954 6 6 4.2275 -0.8747 0.0665 7 6 5.7211 -1.0710 0.1075 8 6 6.0444 -2.5210 -0.1453 9 1 5.2479 -3.2296 -0.3179 10 6 7.3569 -2.9432 -0.1551 11 7 8.3268 -2.0803 0.0556 12 14 7.7575 -4.7408 -0.4677 13 1 7.2429 -5.1376 -1.8030 14 1 9.2293 -4.9342 -0.4274 15 1 7.1188 -5.5793 0.5782 16 6 3.5584 -0.6571 -1.2204 17 8 4.1949 -0.4272 -2.2273 18 6 2.0455 -0.7282 -1.2496 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5139 -0.8901 21 1 -0.3634 -1.0276 -0.0005 22 1 1.7794 -0.1428 2.1290 23 1 1.5677 -1.7037 1.3081 24 1 4.0596 -1.0564 2.1234 25 1 6.1898 -0.4551 -0.6601 26 1 6.0991 -0.7800 1.0876 27 1 9.2502 -2.3773 0.0483 28 1 1.7231 -1.7693 -1.2316 29 1 1.6684 -0.2375 -2.1468 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075545802.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:04 Heat of formation + Delta-G solvation = -49.558468 kcal Electronic energy + Delta-G solvation = -11963.065014 eV Core-core repulsion = 9850.470897 eV Total energy + Delta-G solvation = -2112.594117 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.105 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.32683 -36.43770 -33.87429 -32.01062 -28.80915 -28.37207 -25.49033 -22.45547 -21.63138 -20.47040 -17.24298 -16.27184 -15.17429 -14.97699 -14.63315 -14.17429 -13.83622 -13.09304 -12.76358 -12.40813 -12.22548 -11.98612 -11.79726 -11.39933 -11.04145 -10.71182 -10.68460 -10.46791 -10.37173 -9.78109 -9.53364 -8.68594 -8.34847 -8.07084 -5.97680 -4.00639 1.84103 3.35380 3.39185 3.41577 3.64752 4.49356 4.65841 4.82021 4.97986 5.08272 5.37991 5.56280 5.60661 5.67090 5.74161 5.79683 5.88731 6.00707 6.12095 6.13793 6.37747 6.74790 7.01202 7.26299 7.60486 7.86165 7.97405 8.27691 8.40490 9.02719 9.61941 11.12901 Molecular weight = 194.10amu Principal moments of inertia in cm(-1) A = 0.054917 B = 0.009167 C = 0.008969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.741473 B = 3053.643749 C = 3120.947007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.074 0.926 4 C -0.088 4.088 5 C -0.129 4.129 6 C -0.151 4.151 7 C 0.055 3.945 8 C -0.510 4.510 9 H 0.053 0.947 10 C 0.058 3.942 11 N -0.894 5.894 12 Si 0.895 3.105 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.276 1.276 16 C 0.388 3.612 17 O -0.449 6.449 18 C -0.162 4.162 19 H 0.056 0.944 20 H 0.055 0.945 21 H 0.056 0.944 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.115 0.885 25 H 0.034 0.966 26 H 0.027 0.973 27 H 0.262 0.738 28 H 0.095 0.905 29 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.974 2.696 2.260 14.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 H 0.093 0.907 4 C -0.125 4.125 5 C -0.147 4.147 6 C -0.152 4.152 7 C 0.019 3.981 8 C -0.548 4.548 9 H 0.071 0.929 10 C -0.143 4.143 11 N -0.533 5.533 12 Si 0.723 3.277 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.202 1.202 16 C 0.265 3.735 17 O -0.324 6.324 18 C -0.200 4.200 19 H 0.075 0.925 20 H 0.074 0.926 21 H 0.075 0.925 22 H 0.090 0.910 23 H 0.094 0.906 24 H 0.133 0.867 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.072 0.928 28 H 0.114 0.886 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.438 2.835 1.740 13.843 hybrid contribution 0.315 -1.091 -0.061 1.137 sum -13.123 1.744 1.679 13.344 Atomic orbital electron populations 1.21822 0.94727 1.01961 1.01699 1.21170 0.95650 0.99831 0.93901 0.90739 1.20525 0.93802 1.00662 0.97519 1.23030 0.94211 0.98986 0.98504 1.22496 1.00290 0.99640 0.92770 1.18204 0.84274 0.97455 0.98208 1.20982 0.91933 0.92992 1.48902 0.92877 1.24993 0.96332 0.97690 0.95283 1.69948 0.99567 1.34105 1.49711 0.86608 0.77154 0.85110 0.78870 1.20207 1.21196 1.20203 1.22811 0.90269 0.71802 0.88586 1.90500 1.69715 1.35248 1.36929 1.22438 0.95427 1.02810 0.99357 0.92464 0.92621 0.92478 0.91007 0.90595 0.86698 0.94822 0.95438 0.92846 0.88629 0.89772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.20 37.16 0.34 -1.02 15 2 C -0.09 -1.08 2.75 -90.44 -0.25 -1.33 15 3 H 0.07 0.95 8.14 -51.93 -0.42 0.53 15 4 C -0.09 -1.15 5.31 -28.33 -0.15 -1.30 15 5 C -0.13 -2.28 9.61 -36.53 -0.35 -2.63 15 6 C -0.15 -3.30 5.12 -103.10 -0.53 -3.83 15 7 C 0.06 1.51 4.94 -29.04 -0.14 1.36 15 8 C -0.51 -14.93 9.09 -34.44 -0.31 -15.25 15 9 H 0.05 1.52 7.74 -52.49 -0.41 1.11 15 10 C 0.06 1.72 5.46 -17.82 -0.10 1.62 15 11 N -0.89 -27.48 13.29 55.43 0.74 -26.75 15 12 Si 0.89 22.25 29.54 -169.99 -5.02 17.22 15 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 14 H -0.29 -7.00 7.11 56.52 0.40 -6.59 15 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 16 C 0.39 8.06 6.89 -30.53 -0.21 7.85 15 17 O -0.45 -11.06 17.26 5.52 0.10 -10.96 15 18 C -0.16 -2.42 5.51 -27.22 -0.15 -2.57 15 19 H 0.06 0.47 8.14 -51.93 -0.42 0.05 15 20 H 0.05 0.49 8.14 -51.92 -0.42 0.06 15 21 H 0.06 0.50 8.14 -51.93 -0.42 0.08 15 22 H 0.07 0.79 8.14 -51.93 -0.42 0.37 15 23 H 0.08 0.92 8.13 -51.93 -0.42 0.49 15 24 H 0.12 2.03 7.93 -52.49 -0.42 1.62 15 25 H 0.03 1.01 7.75 -51.93 -0.40 0.61 15 26 H 0.03 0.76 7.95 -51.93 -0.41 0.35 15 27 H 0.26 7.58 8.31 -40.82 -0.34 7.24 15 28 H 0.10 1.32 8.14 -51.93 -0.42 0.89 15 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 15 LS Contribution 250.09 15.07 3.77 3.77 Total: -1.00 -32.54 250.09 -6.43 -38.96 By element: Atomic # 1 Polarization: -1.00 SS G_CDS: -4.15 Total: -5.15 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -1.85 Total: -17.10 kcal Atomic # 7 Polarization: -27.48 SS G_CDS: 0.74 Total: -26.75 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.10 Total: -10.96 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -32.54 -6.43 -38.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075545802.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.595 kcal (2) G-P(sol) polarization free energy of solvation -32.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds