Wall clock time and date at job start Mon Mar 30 2020 01:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.54811 * 2 1 4 4 C 1.52800 * 109.54345 * 120.18417 * 2 1 3 5 5 C 1.49986 * 111.16331 * 172.70607 * 4 2 1 6 6 C 1.32740 * 123.18917 * 338.05252 * 5 4 2 7 7 C 1.50699 * 119.68970 * 180.43502 * 6 5 4 8 8 C 1.50695 * 109.47433 * 95.00254 * 7 6 5 9 9 H 1.07999 * 119.99668 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00331 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99899 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99932 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47142 * 59.99767 * 12 10 8 14 14 H 1.48503 * 109.46961 * 179.97438 * 12 10 8 15 15 H 1.48492 * 109.46938 * 299.99623 * 12 10 8 16 16 C 1.46666 * 120.61479 * 0.41360 * 6 5 4 17 17 O 1.21329 * 121.12684 * 168.57000 * 16 6 5 18 18 C 1.51478 * 117.74956 * 348.61647 * 16 6 5 19 19 H 1.08996 * 109.47366 * 300.00575 * 1 2 3 20 20 H 1.09011 * 109.46895 * 59.99918 * 1 2 3 21 21 H 1.08991 * 109.47509 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.13980 * 293.13674 * 4 2 1 23 23 H 1.08996 * 109.14325 * 52.32587 * 4 2 1 24 24 H 1.07992 * 118.40183 * 158.03432 * 5 4 2 25 25 H 1.09001 * 109.47311 * 215.00403 * 7 6 5 26 26 H 1.09002 * 109.47596 * 335.00103 * 7 6 5 27 27 H 0.97001 * 119.99958 * 180.02562 * 11 10 8 28 28 H 1.09002 * 109.87056 * 282.45017 * 18 16 6 29 29 H 1.08997 * 109.89534 * 161.34565 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0411 -0.7240 1.2447 5 6 3.5297 -0.9007 1.1954 6 6 4.2275 -0.8747 0.0665 7 6 5.7211 -1.0710 0.1075 8 6 6.0444 -2.5210 -0.1453 9 1 5.2479 -3.2296 -0.3179 10 6 7.3569 -2.9432 -0.1551 11 7 8.3268 -2.0803 0.0556 12 14 7.7575 -4.7408 -0.4677 13 1 7.2429 -5.1376 -1.8030 14 1 9.2293 -4.9342 -0.4274 15 1 7.1188 -5.5793 0.5782 16 6 3.5584 -0.6571 -1.2204 17 8 4.1949 -0.4272 -2.2273 18 6 2.0455 -0.7282 -1.2496 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5139 -0.8901 21 1 -0.3634 -1.0276 -0.0005 22 1 1.7794 -0.1428 2.1290 23 1 1.5677 -1.7037 1.3081 24 1 4.0596 -1.0564 2.1234 25 1 6.1898 -0.4551 -0.6601 26 1 6.0991 -0.7800 1.0876 27 1 9.2502 -2.3773 0.0483 28 1 1.7231 -1.7693 -1.2316 29 1 1.6684 -0.2375 -2.1468 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075545802.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:04 Heat of formation + Delta-G solvation = -70.381301 kcal Electronic energy + Delta-G solvation = -11963.967960 eV Core-core repulsion = 9850.470897 eV Total energy + Delta-G solvation = -2113.497063 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.105 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.82665 -37.83340 -35.76298 -33.84802 -30.36795 -29.72460 -27.10287 -24.31046 -23.12385 -21.62863 -18.66063 -18.54751 -16.89990 -16.51613 -16.16806 -15.58527 -15.36584 -14.47873 -14.21845 -14.09372 -13.62494 -13.44363 -13.16655 -12.82642 -12.68989 -12.63534 -12.22336 -11.75054 -11.69671 -11.60321 -11.47917 -10.63443 -10.27294 -9.74179 -8.22910 -6.36333 0.28096 1.34856 1.40040 1.47532 2.05646 2.40269 3.07290 3.28596 3.77558 3.87951 3.99056 4.38658 4.44916 4.62393 4.75193 4.78196 4.88916 4.99720 5.08781 5.23430 5.28172 5.34445 5.36101 5.50629 5.58034 5.70360 5.98649 6.14494 6.72182 6.77906 7.31912 8.87709 Molecular weight = 194.10amu Principal moments of inertia in cm(-1) A = 0.054917 B = 0.009167 C = 0.008969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.741473 B = 3053.643749 C = 3120.947007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.083 4.083 3 H 0.069 0.931 4 C -0.089 4.089 5 C -0.074 4.074 6 C -0.214 4.214 7 C 0.063 3.937 8 C -0.531 4.531 9 H 0.055 0.945 10 C -0.002 4.002 11 N -0.934 5.934 12 Si 0.970 3.030 13 H -0.273 1.273 14 H -0.279 1.279 15 H -0.258 1.258 16 C 0.383 3.617 17 O -0.512 6.512 18 C -0.150 4.150 19 H 0.074 0.926 20 H 0.061 0.939 21 H 0.068 0.932 22 H 0.107 0.893 23 H 0.104 0.896 24 H 0.113 0.887 25 H -0.017 1.017 26 H 0.006 0.994 27 H 0.265 0.735 28 H 0.115 0.885 29 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.017 1.484 3.426 17.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.101 4.101 3 H 0.087 0.913 4 C -0.125 4.125 5 C -0.092 4.092 6 C -0.215 4.215 7 C 0.026 3.974 8 C -0.569 4.569 9 H 0.073 0.927 10 C -0.199 4.199 11 N -0.574 5.574 12 Si 0.793 3.207 13 H -0.198 1.198 14 H -0.204 1.204 15 H -0.182 1.182 16 C 0.265 3.735 17 O -0.391 6.391 18 C -0.187 4.187 19 H 0.093 0.907 20 H 0.081 0.919 21 H 0.087 0.913 22 H 0.125 0.875 23 H 0.122 0.878 24 H 0.131 0.869 25 H 0.001 0.999 26 H 0.024 0.976 27 H 0.074 0.926 28 H 0.133 0.867 29 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.514 1.626 2.933 16.851 hybrid contribution 1.245 -0.658 -0.296 1.439 sum -15.269 0.969 2.636 15.525 Atomic orbital electron populations 1.21770 0.91499 1.03175 1.03012 1.21202 0.98075 0.98943 0.91928 0.91299 1.20734 0.89471 1.02878 0.99405 1.23500 0.97222 0.91928 0.96577 1.22186 0.97670 1.06060 0.95577 1.17890 0.88556 0.95878 0.95035 1.21392 0.92431 0.94157 1.48914 0.92676 1.26040 0.96128 1.03041 0.94731 1.70096 1.00043 1.36636 1.50595 0.85439 0.77283 0.78838 0.79135 1.19822 1.20400 1.18206 1.23552 0.93244 0.69610 0.87046 1.90467 1.71587 1.38615 1.38414 1.22447 0.90047 1.04561 1.01642 0.90675 0.91947 0.91306 0.87450 0.87811 0.86877 0.99896 0.97580 0.92595 0.86719 0.88438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.20 71.98 0.66 -1.18 15 2 C -0.08 -1.73 2.75 -10.68 -0.03 -1.75 15 3 H 0.07 1.54 8.14 -2.39 -0.02 1.52 15 4 C -0.09 -1.88 5.31 29.56 0.16 -1.73 15 5 C -0.07 -2.48 9.61 24.29 0.23 -2.25 15 6 C -0.21 -9.59 5.12 -18.84 -0.10 -9.69 15 7 C 0.06 3.68 4.94 29.10 0.14 3.82 15 8 C -0.53 -32.29 9.09 25.60 0.23 -32.06 15 9 H 0.05 3.23 7.74 -2.91 -0.02 3.20 15 10 C 0.00 -0.11 5.46 84.65 0.46 0.35 15 11 N -0.93 -59.69 13.29 21.45 0.28 -59.41 15 12 Si 0.97 46.23 29.54 68.60 2.03 48.25 15 13 H -0.27 -12.78 7.11 99.48 0.71 -12.07 15 14 H -0.28 -12.85 7.11 99.48 0.71 -12.14 15 15 H -0.26 -11.44 7.11 99.48 0.71 -10.73 15 16 C 0.38 16.27 6.89 28.14 0.19 16.47 15 17 O -0.51 -26.71 17.26 -3.18 -0.05 -26.77 15 18 C -0.15 -4.09 5.51 30.28 0.17 -3.92 15 19 H 0.07 0.79 8.14 -2.39 -0.02 0.78 15 20 H 0.06 0.79 8.14 -2.38 -0.02 0.77 15 21 H 0.07 0.80 8.14 -2.39 -0.02 0.78 15 22 H 0.11 1.69 8.14 -2.39 -0.02 1.67 15 23 H 0.10 1.85 8.13 -2.39 -0.02 1.83 15 24 H 0.11 3.83 7.93 -2.91 -0.02 3.81 15 25 H -0.02 -1.15 7.75 -2.39 -0.02 -1.17 15 26 H 0.01 0.36 7.95 -2.39 -0.02 0.34 15 27 H 0.27 15.83 8.31 -92.71 -0.77 15.06 15 28 H 0.11 2.75 8.14 -2.39 -0.02 2.73 15 29 H 0.10 2.43 8.14 -2.39 -0.02 2.41 15 Total: -1.00 -76.57 250.09 5.49 -71.07 By element: Atomic # 1 Polarization: -2.33 SS G_CDS: 1.11 Total: -1.21 kcal Atomic # 6 Polarization: -34.06 SS G_CDS: 2.13 Total: -31.94 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: 0.28 Total: -59.41 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.05 Total: -26.77 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Total: -76.57 5.49 -71.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075545802.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.691 kcal (2) G-P(sol) polarization free energy of solvation -76.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds