Wall clock time and date at job start Mon Mar 30 2020 02:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35314 * 126.12759 * 2 1 4 4 C 1.39872 * 107.91954 * 179.90471 * 3 2 1 5 5 N 1.30835 * 108.20422 * 0.36600 * 4 3 2 6 6 N 1.34949 * 126.12355 * 180.31496 * 2 1 3 7 7 C 1.46492 * 126.04227 * 359.94220 * 6 2 1 8 8 C 1.53001 * 109.47510 * 89.99746 * 7 6 2 9 9 C 1.52992 * 109.47609 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47489 * 180.02562 * 9 8 7 11 11 H 1.08008 * 119.99665 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00266 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00054 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00135 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.46975 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47333 * 119.99474 * 14 12 10 17 17 H 1.48502 * 109.46798 * 239.99691 * 14 12 10 18 18 H 1.09002 * 109.47152 * 269.68517 * 1 2 3 19 19 H 1.09001 * 109.46980 * 149.68618 * 1 2 3 20 20 H 1.09004 * 109.47113 * 29.68598 * 1 2 3 21 21 H 1.08000 * 126.04140 * 0.04339 * 3 2 1 22 22 H 1.07995 * 125.89631 * 180.14711 * 4 3 2 23 23 H 1.09001 * 109.47504 * 210.00369 * 7 6 2 24 24 H 1.09010 * 109.47188 * 330.00050 * 7 6 2 25 25 H 1.09001 * 109.47246 * 300.00781 * 8 7 6 26 26 H 1.09010 * 109.46647 * 59.99972 * 8 7 6 27 27 H 1.09001 * 109.47252 * 300.00530 * 9 8 7 28 28 H 1.09000 * 109.47097 * 59.99629 * 9 8 7 29 29 H 0.97001 * 120.00334 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 0.0022 5 7 3.6334 -0.6524 -0.0044 6 7 2.3026 -1.0900 -0.0060 7 6 1.8539 -2.4845 -0.0125 8 6 1.6965 -2.9630 -1.4572 9 6 1.2273 -4.4192 -1.4639 10 6 1.0728 -4.8907 -2.8869 11 1 1.2874 -4.2186 -3.7048 12 6 0.6566 -6.1795 -3.1449 13 7 0.3948 -6.9977 -2.1491 14 14 0.4658 -6.7641 -4.9088 15 1 0.8202 -5.6605 -5.8371 16 1 1.3664 -7.9205 -5.1472 17 1 -0.9415 -7.1758 -5.1443 18 1 -0.3633 -0.0056 1.0277 19 1 -0.3633 -0.8872 -0.5187 20 1 -0.3633 0.8928 -0.5090 21 1 1.9741 2.1211 0.0007 22 1 4.5084 1.2891 0.0050 23 1 2.5902 -3.1055 0.4978 24 1 0.8958 -2.5604 0.5018 25 1 0.9602 -2.3420 -1.9674 26 1 2.6546 -2.8872 -1.9714 27 1 1.9633 -5.0405 -0.9536 28 1 0.2692 -4.4946 -0.9497 29 1 0.1015 -7.9043 -2.3305 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079986085.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:55 Heat of formation + Delta-G solvation = 52.736879 kcal Electronic energy + Delta-G solvation = -11646.893660 eV Core-core repulsion = 9571.028153 eV Total energy + Delta-G solvation = -2075.865507 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.92199 -35.03022 -32.87572 -31.97269 -30.32982 -26.79058 -26.57970 -23.52176 -20.88728 -20.48234 -19.31260 -16.62354 -15.97254 -14.92138 -14.68265 -14.46001 -13.72493 -13.30514 -12.85359 -12.81164 -12.34787 -11.99005 -11.84822 -11.51812 -10.91548 -10.89805 -10.61063 -10.33478 -9.85769 -9.64873 -9.24415 -8.84937 -8.41712 -8.21771 -6.06401 -4.09057 2.16995 2.87531 3.07266 3.28129 3.35806 3.40493 4.41826 4.85384 4.90891 5.24155 5.29900 5.47980 5.55076 5.66778 5.81915 5.86273 5.91521 5.97916 6.36316 6.45299 6.59703 6.90268 6.95151 7.37866 7.56101 7.67104 7.91776 8.03652 8.33920 8.97138 9.55622 11.04937 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.062947 B = 0.006916 C = 0.006839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.714028 B = 4047.389823 C = 4093.397370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.083 3.917 3 C -0.289 4.289 4 C 0.034 3.966 5 N -0.299 5.299 6 N -0.355 5.355 7 C 0.125 3.875 8 C -0.123 4.123 9 C 0.024 3.976 10 C -0.521 4.521 11 H 0.056 0.944 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.893 3.107 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.283 1.283 18 H 0.076 0.924 19 H 0.077 0.923 20 H 0.082 0.918 21 H 0.140 0.860 22 H 0.177 0.823 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.020 0.980 28 H 0.019 0.981 29 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.285 12.794 4.676 13.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.046 4.046 3 C -0.318 4.318 4 C -0.151 4.151 5 N -0.120 5.120 6 N -0.138 5.138 7 C 0.005 3.995 8 C -0.161 4.161 9 C -0.013 4.013 10 C -0.559 4.559 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.534 5.534 14 Si 0.721 3.279 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.209 1.209 18 H 0.095 0.905 19 H 0.096 0.904 20 H 0.101 0.899 21 H 0.158 0.842 22 H 0.194 0.806 23 H 0.109 0.891 24 H 0.107 0.893 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.914 11.403 4.715 12.373 hybrid contribution -0.564 0.330 -0.959 1.160 sum 0.350 11.733 3.756 12.325 Atomic orbital electron populations 1.20471 0.87625 1.04151 1.03072 1.21141 0.94784 0.87642 1.00986 1.21143 0.92439 0.98604 1.19662 1.23729 0.97895 0.92388 1.01102 1.77361 0.97571 1.12850 1.24242 1.49010 1.03364 1.06559 1.54824 1.22114 1.00258 0.76074 1.01082 1.22061 1.01507 1.00513 0.92026 1.19060 0.96504 0.88115 0.97665 1.21217 1.45189 0.97255 0.92251 0.92596 1.25013 0.95351 0.96794 0.97214 1.69962 1.46149 1.06540 1.30755 0.86513 0.77723 0.78764 0.84899 1.19713 1.20926 1.20947 0.90487 0.90446 0.89942 0.84172 0.80598 0.89059 0.89331 0.92838 0.92343 0.96177 0.96288 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.09 9.90 36.01 0.36 -0.74 15 2 C 0.08 1.26 6.93 -82.26 -0.57 0.69 15 3 C -0.29 -4.04 10.72 -40.01 -0.43 -4.47 15 4 C 0.03 0.50 12.03 -17.37 -0.21 0.29 15 5 N -0.30 -5.41 12.58 30.62 0.39 -5.03 15 6 N -0.36 -6.21 3.61 -57.14 -0.21 -6.41 15 7 C 0.12 2.19 6.07 -4.05 -0.02 2.17 15 8 C -0.12 -2.55 5.48 -26.74 -0.15 -2.70 15 9 C 0.02 0.61 4.97 -27.89 -0.14 0.47 15 10 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 15 11 H 0.06 1.56 7.74 -52.48 -0.41 1.15 15 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 13 N -0.89 -26.56 13.29 55.43 0.74 -25.82 15 14 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 15 15 H -0.27 -6.49 7.11 56.52 0.40 -6.08 15 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 17 H -0.28 -6.75 7.11 56.52 0.40 -6.34 15 18 H 0.08 0.76 8.14 -51.93 -0.42 0.33 15 19 H 0.08 0.95 7.72 -51.93 -0.40 0.55 15 20 H 0.08 0.78 8.14 -51.93 -0.42 0.36 15 21 H 0.14 1.56 8.06 -52.49 -0.42 1.13 15 22 H 0.18 1.94 8.06 -52.49 -0.42 1.52 15 23 H 0.09 1.61 8.14 -51.93 -0.42 1.18 15 24 H 0.09 1.38 7.66 -51.92 -0.40 0.98 15 25 H 0.05 1.10 8.14 -51.93 -0.42 0.67 15 26 H 0.06 1.29 8.14 -51.92 -0.42 0.87 15 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 15 28 H 0.02 0.49 8.14 -51.93 -0.42 0.06 15 29 H 0.26 7.28 8.31 -40.82 -0.34 6.94 15 LS Contribution 255.53 15.07 3.85 3.85 Total: -1.00 -31.53 255.53 -5.97 -37.51 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: -4.15 Total: -2.94 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -1.57 Total: -17.74 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.92 Total: -37.26 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.53 -5.97 -37.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079986085.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.244 kcal (2) G-P(sol) polarization free energy of solvation -31.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds