Wall clock time and date at job start Mon Mar 30 2020 02:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47364 * 2 1 4 4 C 1.52995 * 109.47231 * 239.99654 * 2 1 3 5 5 C 1.50704 * 109.47144 * 119.99663 * 2 1 3 6 6 N 1.30486 * 125.74354 * 5.24185 * 5 2 1 7 7 C 1.34240 * 109.40719 * 179.97438 * 6 5 2 8 8 C 1.34640 * 108.27535 * 0.02562 * 7 6 5 9 9 N 1.36267 * 125.74459 * 185.55411 * 5 2 1 10 10 C 1.37564 * 126.51504 * 0.02562 * 9 5 2 11 11 H 1.07993 * 119.99602 * 336.74905 * 10 9 5 12 12 C 1.38944 * 119.99570 * 156.75241 * 10 9 5 13 13 N 1.31333 * 119.99476 * 167.08135 * 12 10 9 14 14 Si 1.86791 * 120.00271 * 347.08403 * 12 10 9 15 15 H 1.48501 * 109.47201 * 87.88644 * 14 12 10 16 16 H 1.48503 * 109.46857 * 207.88405 * 14 12 10 17 17 H 1.48500 * 109.47487 * 327.88205 * 14 12 10 18 18 H 1.09006 * 109.47106 * 300.00561 * 1 2 3 19 19 H 1.09004 * 109.46833 * 60.00106 * 1 2 3 20 20 H 1.08993 * 109.47543 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47331 * 180.02562 * 3 2 1 22 22 H 1.09004 * 109.47059 * 299.99756 * 3 2 1 23 23 H 1.09000 * 109.47064 * 59.99720 * 3 2 1 24 24 H 1.09001 * 109.47339 * 294.30564 * 4 2 1 25 25 H 1.08997 * 109.47189 * 54.30627 * 4 2 1 26 26 H 1.09003 * 109.47582 * 174.30430 * 4 2 1 27 27 H 1.07999 * 125.86682 * 179.97438 * 7 6 5 28 28 H 1.08004 * 126.58213 * 180.02562 * 8 7 6 29 29 H 0.97003 * 119.99744 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0323 -0.7104 1.2305 6 7 1.2921 -1.3292 2.1090 7 6 2.0761 -1.8443 3.0693 8 6 3.3546 -1.5359 2.7812 9 7 3.3355 -0.8094 1.6162 10 6 4.4252 -0.2843 0.9612 11 1 4.3681 -0.0698 -0.0957 12 6 5.5993 -0.0300 1.6594 13 7 6.7093 0.2267 1.0060 14 14 5.5990 -0.0532 3.5271 15 1 5.8543 -1.4358 4.0050 16 1 6.6634 0.8500 4.0336 17 1 4.2791 0.4078 4.0278 18 1 -0.3634 0.5139 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 3.1300 1.4425 -0.0005 22 1 1.6768 1.9563 -0.8900 23 1 1.6767 1.9563 0.8900 24 1 1.7623 -1.7742 -1.1996 25 1 1.5958 -0.2698 -2.1362 26 1 3.1253 -0.6339 -1.3017 27 1 1.7391 -2.4086 3.9263 28 1 4.2273 -1.8048 3.3579 29 1 7.5289 0.4047 1.4934 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082739041.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:56 Heat of formation + Delta-G solvation = 43.900311 kcal Electronic energy + Delta-G solvation = -12656.155228 eV Core-core repulsion = 10579.906539 eV Total energy + Delta-G solvation = -2076.248689 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.85246 -35.80104 -33.94222 -31.48592 -27.77380 -26.62622 -26.54643 -25.11728 -21.22595 -20.54527 -18.28748 -17.33815 -15.87952 -14.37956 -14.24556 -13.85870 -13.55972 -13.07496 -12.86957 -12.46442 -12.23123 -11.61493 -11.51644 -11.12827 -10.98821 -10.95689 -10.46147 -10.29809 -10.21644 -9.87968 -9.50915 -8.76348 -8.51787 -7.13904 -6.87738 -4.53559 2.90760 3.08238 3.16791 3.36499 3.87558 4.28155 4.50839 4.82125 5.29087 5.64298 5.69804 5.94128 6.16229 6.21395 6.24309 6.37561 6.41327 6.46750 6.55038 6.67115 6.74818 6.85500 6.99948 7.11156 7.15815 7.62887 7.99440 8.09213 8.65135 9.18149 9.44643 10.18936 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.040064 B = 0.016681 C = 0.013310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.706601 B = 1678.160735 C = 2103.210543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.037 3.963 3 C -0.147 4.147 4 C -0.141 4.141 5 C 0.142 3.858 6 N -0.509 5.509 7 C -0.060 4.060 8 C -0.131 4.131 9 N -0.267 5.267 10 C -0.345 4.345 11 H 0.130 0.870 12 C 0.072 3.928 13 N -0.838 5.838 14 Si 0.901 3.099 15 H -0.270 1.270 16 H -0.288 1.288 17 H -0.250 1.250 18 H 0.055 0.945 19 H 0.046 0.954 20 H 0.057 0.943 21 H 0.079 0.921 22 H 0.049 0.951 23 H 0.048 0.952 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.148 0.852 28 H 0.150 0.850 29 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.796 0.684 -0.611 4.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.035 3.965 3 C -0.205 4.205 4 C -0.199 4.199 5 C -0.116 4.116 6 N -0.229 5.229 7 C -0.214 4.214 8 C -0.271 4.271 9 N 0.067 4.933 10 C -0.474 4.474 11 H 0.148 0.852 12 C -0.141 4.141 13 N -0.468 5.468 14 Si 0.729 3.271 15 H -0.197 1.197 16 H -0.216 1.216 17 H -0.174 1.174 18 H 0.074 0.926 19 H 0.065 0.935 20 H 0.076 0.924 21 H 0.097 0.903 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.165 0.835 28 H 0.167 0.833 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.271 0.784 -0.802 5.389 hybrid contribution 1.339 -0.043 1.106 1.737 sum -3.932 0.741 0.305 4.013 Atomic orbital electron populations 1.21597 0.93652 1.01953 1.00508 1.18564 0.95062 0.93746 0.89119 1.21977 1.03622 0.94481 1.00438 1.21922 1.02113 0.99921 0.95933 1.22644 0.80034 1.08351 1.00544 1.69874 1.33341 1.15756 1.03933 1.21619 0.89715 1.08838 1.01252 1.22302 0.99894 1.08825 0.96043 1.41735 1.06530 1.29865 1.15131 1.19643 0.88450 1.42865 0.96422 0.85250 1.25371 0.94317 0.93753 1.00616 1.69635 0.99570 1.39765 1.37796 0.86534 0.79110 0.78250 0.83231 1.19654 1.21565 1.17416 0.92623 0.93479 0.92375 0.90262 0.93219 0.93250 0.93027 0.92919 0.91639 0.83490 0.83269 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.06 7.95 37.16 0.30 -1.77 15 2 C 0.04 0.73 0.76 -155.66 -0.12 0.62 15 3 C -0.15 -2.79 8.28 37.16 0.31 -2.48 15 4 C -0.14 -2.58 8.32 37.16 0.31 -2.27 15 5 C 0.14 3.40 6.27 -154.30 -0.97 2.43 15 6 N -0.51 -12.37 10.53 -10.52 -0.11 -12.48 15 7 C -0.06 -1.41 11.85 -17.77 -0.21 -1.62 15 8 C -0.13 -3.22 8.55 -16.38 -0.14 -3.36 15 9 N -0.27 -6.80 2.76 -58.87 -0.16 -6.97 15 10 C -0.35 -9.03 8.47 -14.72 -0.12 -9.15 15 11 H 0.13 3.43 5.08 -52.49 -0.27 3.16 15 12 C 0.07 1.87 5.48 -17.50 -0.10 1.78 15 13 N -0.84 -22.22 13.95 55.49 0.77 -21.45 15 14 Si 0.90 20.75 24.65 -169.99 -4.19 16.56 15 15 H -0.27 -5.98 6.54 56.52 0.37 -5.61 15 16 H -0.29 -6.45 7.11 56.52 0.40 -6.05 15 17 H -0.25 -6.00 6.70 56.52 0.38 -5.62 15 18 H 0.05 0.99 8.14 -51.93 -0.42 0.57 15 19 H 0.05 0.68 8.14 -51.93 -0.42 0.25 15 20 H 0.06 1.03 8.14 -51.93 -0.42 0.60 15 21 H 0.08 1.67 5.54 -51.93 -0.29 1.39 15 22 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 23 H 0.05 0.94 8.14 -51.93 -0.42 0.52 15 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 15 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 26 H 0.06 1.31 5.94 -51.93 -0.31 1.00 15 27 H 0.15 2.93 8.06 -52.49 -0.42 2.51 15 28 H 0.15 3.52 4.32 -52.48 -0.23 3.29 15 29 H 0.29 6.99 8.31 -40.82 -0.34 6.65 15 LS Contribution 232.42 15.07 3.50 3.50 Total: -1.00 -28.17 232.42 -4.59 -32.76 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -3.66 Total: 3.91 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -0.74 Total: -15.83 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.50 Total: -40.89 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.19 Total: 16.56 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -28.17 -4.59 -32.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082739041.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.658 kcal (2) G-P(sol) polarization free energy of solvation -28.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds