Wall clock time and date at job start Mon Mar 30 2020 02:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47364 * 2 1 4 4 C 1.52995 * 109.47231 * 239.99654 * 2 1 3 5 5 C 1.50704 * 109.47144 * 119.99663 * 2 1 3 6 6 N 1.30486 * 125.74354 * 5.24185 * 5 2 1 7 7 C 1.34240 * 109.40719 * 179.97438 * 6 5 2 8 8 C 1.34640 * 108.27535 * 0.02562 * 7 6 5 9 9 N 1.36267 * 125.74459 * 185.55411 * 5 2 1 10 10 C 1.37564 * 126.51504 * 0.02562 * 9 5 2 11 11 H 1.07993 * 119.99602 * 336.74905 * 10 9 5 12 12 C 1.38944 * 119.99570 * 156.75241 * 10 9 5 13 13 N 1.31333 * 119.99476 * 167.08135 * 12 10 9 14 14 Si 1.86791 * 120.00271 * 347.08403 * 12 10 9 15 15 H 1.48501 * 109.47201 * 87.88644 * 14 12 10 16 16 H 1.48503 * 109.46857 * 207.88405 * 14 12 10 17 17 H 1.48500 * 109.47487 * 327.88205 * 14 12 10 18 18 H 1.09006 * 109.47106 * 300.00561 * 1 2 3 19 19 H 1.09004 * 109.46833 * 60.00106 * 1 2 3 20 20 H 1.08993 * 109.47543 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47331 * 180.02562 * 3 2 1 22 22 H 1.09004 * 109.47059 * 299.99756 * 3 2 1 23 23 H 1.09000 * 109.47064 * 59.99720 * 3 2 1 24 24 H 1.09001 * 109.47339 * 294.30564 * 4 2 1 25 25 H 1.08997 * 109.47189 * 54.30627 * 4 2 1 26 26 H 1.09003 * 109.47582 * 174.30430 * 4 2 1 27 27 H 1.07999 * 125.86682 * 179.97438 * 7 6 5 28 28 H 1.08004 * 126.58213 * 180.02562 * 8 7 6 29 29 H 0.97003 * 119.99744 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0323 -0.7104 1.2305 6 7 1.2921 -1.3292 2.1090 7 6 2.0761 -1.8443 3.0693 8 6 3.3546 -1.5359 2.7812 9 7 3.3355 -0.8094 1.6162 10 6 4.4252 -0.2843 0.9612 11 1 4.3681 -0.0698 -0.0957 12 6 5.5993 -0.0300 1.6594 13 7 6.7093 0.2267 1.0060 14 14 5.5990 -0.0532 3.5271 15 1 5.8543 -1.4358 4.0050 16 1 6.6634 0.8500 4.0336 17 1 4.2791 0.4078 4.0278 18 1 -0.3634 0.5139 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 3.1300 1.4425 -0.0005 22 1 1.6768 1.9563 -0.8900 23 1 1.6767 1.9563 0.8900 24 1 1.7623 -1.7742 -1.1996 25 1 1.5958 -0.2698 -2.1362 26 1 3.1253 -0.6339 -1.3017 27 1 1.7391 -2.4086 3.9263 28 1 4.2273 -1.8048 3.3579 29 1 7.5289 0.4047 1.4934 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082739041.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:56 Heat of formation + Delta-G solvation = 27.118148 kcal Electronic energy + Delta-G solvation = -12656.882957 eV Core-core repulsion = 10579.906539 eV Total energy + Delta-G solvation = -2076.976418 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.70710 -37.34779 -35.88096 -33.42500 -29.60409 -28.08214 -28.00103 -27.07725 -22.99000 -22.34915 -20.15997 -19.15159 -17.73376 -16.11860 -16.06617 -15.60579 -15.31336 -14.67062 -14.53223 -14.26696 -14.08717 -13.05415 -12.97644 -12.83548 -12.82514 -12.49810 -12.08296 -11.93710 -11.76757 -11.63664 -11.31244 -10.66498 -10.44990 -9.00290 -8.84364 -6.53956 1.06525 1.21780 1.32676 1.49373 1.99335 2.43025 2.67283 2.87531 3.67850 4.10768 4.19259 4.29212 4.43712 4.70382 4.76693 4.82564 4.94427 4.98843 5.04418 5.09260 5.14772 5.26918 5.34330 5.50112 5.58341 5.76890 6.04279 6.23898 6.68764 7.26111 7.56652 8.25936 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.040064 B = 0.016681 C = 0.013310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.706601 B = 1678.160735 C = 2103.210543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.027 3.973 3 C -0.140 4.140 4 C -0.133 4.133 5 C 0.139 3.861 6 N -0.523 5.523 7 C -0.061 4.061 8 C -0.152 4.152 9 N -0.286 5.286 10 C -0.353 4.353 11 H 0.116 0.884 12 C 0.036 3.964 13 N -0.868 5.868 14 Si 0.950 3.050 15 H -0.255 1.255 16 H -0.278 1.278 17 H -0.266 1.266 18 H 0.046 0.954 19 H 0.082 0.918 20 H 0.051 0.949 21 H 0.050 0.950 22 H 0.085 0.915 23 H 0.041 0.959 24 H 0.044 0.956 25 H 0.089 0.911 26 H 0.041 0.959 27 H 0.181 0.819 28 H 0.157 0.843 29 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.882 0.762 -0.504 5.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.025 3.975 3 C -0.198 4.198 4 C -0.191 4.191 5 C -0.120 4.120 6 N -0.243 5.243 7 C -0.214 4.214 8 C -0.291 4.291 9 N 0.048 4.952 10 C -0.482 4.482 11 H 0.134 0.866 12 C -0.173 4.173 13 N -0.500 5.500 14 Si 0.776 3.224 15 H -0.181 1.181 16 H -0.204 1.204 17 H -0.191 1.191 18 H 0.065 0.935 19 H 0.101 0.899 20 H 0.070 0.930 21 H 0.069 0.931 22 H 0.104 0.896 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.108 0.892 26 H 0.060 0.940 27 H 0.198 0.802 28 H 0.174 0.826 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.346 0.849 -0.689 6.440 hybrid contribution 1.589 -0.089 1.037 1.899 sum -4.757 0.760 0.348 4.830 Atomic orbital electron populations 1.21540 0.91404 1.01984 1.01886 1.18890 0.96829 0.93802 0.87991 1.21902 1.01707 0.94338 1.01855 1.21850 1.00701 0.99740 0.96822 1.23607 0.79622 1.07397 1.01357 1.69945 1.33562 1.16350 1.04459 1.22227 0.89271 1.08140 1.01791 1.22649 1.00842 1.09373 0.96188 1.41878 1.06876 1.30747 1.15730 1.19583 0.89099 1.43353 0.96144 0.86631 1.25936 0.94004 0.93579 1.03814 1.69674 1.00154 1.41010 1.39162 0.85779 0.78361 0.79040 0.79258 1.18119 1.20429 1.19088 0.93459 0.89882 0.92997 0.93101 0.89618 0.93961 0.93692 0.89228 0.94037 0.80236 0.82592 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.52 7.95 71.98 0.57 -2.94 15 2 C 0.03 1.02 0.76 -52.93 -0.04 0.98 15 3 C -0.14 -5.10 8.28 71.98 0.60 -4.51 15 4 C -0.13 -4.68 8.32 71.98 0.60 -4.08 15 5 C 0.14 6.52 6.27 137.74 0.86 7.39 15 6 N -0.52 -24.72 10.53 -187.20 -1.97 -26.69 15 7 C -0.06 -2.75 11.85 83.50 0.99 -1.76 15 8 C -0.15 -7.35 8.55 83.01 0.71 -6.64 15 9 N -0.29 -14.52 2.76 -340.16 -0.94 -15.46 15 10 C -0.35 -18.72 8.47 83.96 0.71 -18.01 15 11 H 0.12 6.31 5.08 -2.91 -0.01 6.30 15 12 C 0.04 1.89 5.48 84.94 0.47 2.35 15 13 N -0.87 -46.45 13.95 21.66 0.30 -46.15 15 14 Si 0.95 42.37 24.65 68.60 1.69 44.06 15 15 H -0.26 -10.69 6.54 99.48 0.65 -10.04 15 16 H -0.28 -11.78 7.11 99.48 0.71 -11.07 15 17 H -0.27 -12.47 6.70 99.48 0.67 -11.80 15 18 H 0.05 1.57 8.14 -2.38 -0.02 1.55 15 19 H 0.08 2.04 8.14 -2.38 -0.02 2.02 15 20 H 0.05 1.70 8.14 -2.39 -0.02 1.68 15 21 H 0.05 2.14 5.54 -2.39 -0.01 2.13 15 22 H 0.09 2.45 8.14 -2.38 -0.02 2.43 15 23 H 0.04 1.56 8.14 -2.39 -0.02 1.54 15 24 H 0.04 1.60 8.14 -2.39 -0.02 1.58 15 25 H 0.09 2.44 8.14 -2.39 -0.02 2.43 15 26 H 0.04 1.64 5.94 -2.39 -0.01 1.63 15 27 H 0.18 6.69 8.06 -2.91 -0.02 6.67 15 28 H 0.16 7.15 4.32 -2.91 -0.01 7.14 15 29 H 0.29 14.34 8.31 -92.71 -0.77 13.57 15 Total: -1.00 -59.31 232.42 5.59 -53.72 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 1.04 Total: 17.75 kcal Atomic # 6 Polarization: -32.70 SS G_CDS: 5.47 Total: -27.23 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -2.61 Total: -88.30 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.69 Total: 44.06 kcal Total: -59.31 5.59 -53.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082739041.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.835 kcal (2) G-P(sol) polarization free energy of solvation -59.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds