Wall clock time and date at job start Mon Mar 30 2020 02:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47200 * 2 1 4 4 H 1.09003 * 109.46709 * 54.99985 * 3 2 1 5 5 C 1.53002 * 109.46471 * 295.00074 * 3 2 1 6 6 N 1.46495 * 109.47094 * 175.00269 * 3 2 1 7 7 C 1.35900 * 124.86367 * 85.00040 * 6 3 2 8 8 C 1.35073 * 107.37528 * 180.02562 * 7 6 3 9 9 C 1.42225 * 105.55232 * 0.02562 * 8 7 6 10 10 C 1.41424 * 126.57120 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99609 * 0.02714 * 10 9 8 12 12 C 1.39855 * 120.00332 * 180.02562 * 10 9 8 13 13 N 1.30886 * 119.99769 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00170 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.47028 * 60.00066 * 14 12 10 16 16 H 1.48493 * 109.47044 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47020 * 300.00177 * 14 12 10 18 18 N 1.28477 * 124.85990 * 265.02355 * 6 3 2 19 19 H 1.09005 * 109.46853 * 300.00070 * 1 2 3 20 20 H 1.08999 * 109.47230 * 59.99991 * 1 2 3 21 21 H 1.08999 * 109.47296 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47093 * 239.99706 * 2 1 3 23 23 H 1.09007 * 109.47172 * 119.99685 * 2 1 3 24 24 H 1.08996 * 109.47059 * 60.00315 * 5 3 2 25 25 H 1.09010 * 109.46217 * 179.97438 * 5 3 2 26 26 H 1.08995 * 109.47254 * 299.99241 * 5 3 2 27 27 H 1.07994 * 126.31001 * 0.02562 * 7 6 3 28 28 H 1.08003 * 127.22092 * 179.97438 * 8 7 6 29 29 H 0.96999 * 120.00053 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1265 -1.3074 6 7 3.5000 1.4443 0.1203 7 6 4.3654 1.3158 -0.9197 8 6 5.6161 1.3638 -0.4120 9 6 5.4521 1.5278 0.9912 10 6 6.4831 1.6299 1.9539 11 1 7.5169 1.5852 1.6446 12 6 6.1639 1.7888 3.3062 13 7 4.9110 1.8425 3.6810 14 14 7.5258 1.9244 4.5776 15 1 8.3758 3.1023 4.2688 16 1 6.9284 2.0859 5.9275 17 1 8.3558 0.6934 4.5471 18 7 4.1458 1.5670 1.2242 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8899 23 1 1.8934 -0.5138 0.8901 24 1 0.5489 2.1251 -1.3969 25 1 1.9982 3.1543 -1.3072 26 1 2.0699 1.5875 -2.1492 27 1 4.1016 1.1971 -1.9602 28 1 6.5457 1.2919 -0.9572 29 1 4.6896 1.9531 4.6189 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082867473.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:05 Heat of formation + Delta-G solvation = 40.411975 kcal Electronic energy + Delta-G solvation = -12104.479367 eV Core-core repulsion = 10028.079413 eV Total energy + Delta-G solvation = -2076.399955 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.29196 -37.26547 -35.09102 -32.08040 -30.78606 -29.81640 -27.36260 -25.24129 -22.61210 -21.66204 -20.32555 -18.57661 -17.65442 -16.50400 -16.18884 -15.67508 -14.95848 -14.33389 -14.17287 -13.77519 -13.69530 -13.06953 -12.85777 -12.76199 -12.62216 -12.36525 -12.35020 -11.87802 -11.69619 -11.65841 -11.07037 -10.33036 -9.33129 -9.27409 -8.25369 -6.18433 1.41771 1.43546 1.54735 1.81899 2.34516 2.44340 2.47596 3.65452 3.73620 3.95687 4.17376 4.27394 4.38322 4.51297 4.65961 4.83307 4.91819 5.00470 5.03567 5.11643 5.26996 5.39785 5.41469 5.50460 5.55765 5.95039 6.46841 6.90474 7.04176 7.27713 8.43715 8.75289 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.054985 B = 0.009906 C = 0.008876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.103467 B = 2825.923959 C = 3153.774326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.125 4.125 3 C 0.148 3.852 4 H 0.072 0.928 5 C -0.149 4.149 6 N -0.332 5.332 7 C -0.022 4.022 8 C -0.328 4.328 9 C 0.141 3.859 10 C -0.490 4.490 11 H 0.077 0.923 12 C 0.020 3.980 13 N -0.828 5.828 14 Si 0.985 3.015 15 H -0.262 1.262 16 H -0.275 1.275 17 H -0.262 1.262 18 N -0.366 5.366 19 H 0.052 0.948 20 H 0.083 0.917 21 H 0.069 0.931 22 H 0.072 0.928 23 H 0.031 0.969 24 H 0.108 0.892 25 H 0.051 0.949 26 H 0.077 0.923 27 H 0.188 0.812 28 H 0.134 0.866 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.609 -1.480 -7.478 10.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.164 4.164 3 C 0.047 3.953 4 H 0.090 0.910 5 C -0.206 4.206 6 N -0.116 5.116 7 C -0.167 4.167 8 C -0.358 4.358 9 C -0.009 4.009 10 C -0.529 4.529 11 H 0.096 0.904 12 C -0.193 4.193 13 N -0.458 5.458 14 Si 0.806 3.194 15 H -0.186 1.186 16 H -0.200 1.200 17 H -0.186 1.186 18 N -0.199 5.199 19 H 0.072 0.928 20 H 0.102 0.898 21 H 0.088 0.912 22 H 0.091 0.909 23 H 0.050 0.950 24 H 0.126 0.874 25 H 0.070 0.930 26 H 0.096 0.904 27 H 0.205 0.795 28 H 0.152 0.848 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.777 -1.349 -6.495 11.002 hybrid contribution 1.416 -0.031 0.168 1.427 sum -7.360 -1.380 -6.327 9.804 Atomic orbital electron populations 1.21747 0.91889 1.03045 1.03013 1.21858 0.98525 0.94517 1.01477 1.21419 0.74992 0.98228 1.00710 0.91006 1.22137 1.04006 1.00008 0.94487 1.46147 1.06860 1.54648 1.03960 1.22794 0.89787 1.08769 0.95368 1.21909 0.97636 1.21187 0.95074 1.19846 0.90733 0.97868 0.92464 1.18881 0.92510 1.50066 0.91456 0.90442 1.26702 0.98452 0.92990 1.01109 1.70116 1.19921 1.38594 1.17152 0.85241 0.78119 0.79644 0.76378 1.18600 1.19952 1.18616 1.74563 1.06479 1.30996 1.07856 0.92848 0.89805 0.91211 0.90900 0.95022 0.87355 0.93033 0.90440 0.79515 0.84797 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.67 71.98 0.70 -2.28 15 2 C -0.13 -3.85 5.73 30.60 0.18 -3.68 15 3 C 0.15 5.28 3.27 44.99 0.15 5.42 15 4 H 0.07 2.81 8.14 -2.39 -0.02 2.79 15 5 C -0.15 -3.71 8.56 71.98 0.62 -3.10 15 6 N -0.33 -15.89 3.24 -326.91 -1.06 -16.94 15 7 C -0.02 -0.96 10.55 83.33 0.88 -0.08 15 8 C -0.33 -16.99 10.98 22.53 0.25 -16.75 15 9 C 0.14 8.65 6.78 40.78 0.28 8.92 15 10 C -0.49 -30.13 9.42 23.45 0.22 -29.91 15 11 H 0.08 4.49 7.84 -2.91 -0.02 4.46 15 12 C 0.02 1.19 5.49 85.23 0.47 1.66 15 13 N -0.83 -50.88 11.97 21.81 0.26 -50.62 15 14 Si 0.98 43.69 29.56 68.60 2.03 45.72 15 15 H -0.26 -11.11 7.11 99.48 0.71 -10.40 15 16 H -0.27 -11.64 7.11 99.48 0.71 -10.93 15 17 H -0.26 -11.12 7.11 99.48 0.71 -10.42 15 18 N -0.37 -22.00 10.24 -51.61 -0.53 -22.53 15 19 H 0.05 1.18 8.14 -2.38 -0.02 1.16 15 20 H 0.08 1.34 6.56 -2.39 -0.02 1.33 15 21 H 0.07 1.31 8.14 -2.39 -0.02 1.29 15 22 H 0.07 2.06 8.14 -2.39 -0.02 2.05 15 23 H 0.03 1.20 8.14 -2.38 -0.02 1.18 15 24 H 0.11 1.91 6.56 -2.39 -0.02 1.90 15 25 H 0.05 1.41 8.14 -2.38 -0.02 1.39 15 26 H 0.08 1.70 7.06 -2.39 -0.02 1.69 15 27 H 0.19 6.14 7.17 -2.91 -0.02 6.12 15 28 H 0.13 6.27 8.06 -2.91 -0.02 6.25 15 29 H 0.27 15.21 8.30 -92.71 -0.77 14.44 15 Total: -1.00 -75.41 247.18 5.55 -69.87 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 1.12 Total: 14.29 kcal Atomic # 6 Polarization: -43.51 SS G_CDS: 3.73 Total: -39.78 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -1.33 Total: -90.10 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -75.41 5.55 -69.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082867473.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.278 kcal (2) G-P(sol) polarization free energy of solvation -75.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds