Wall clock time and date at job start Mon Mar 30 2020 01:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46921 * 2 1 4 4 H 1.09002 * 109.47071 * 305.64668 * 3 2 1 5 5 C 1.50693 * 109.47428 * 185.64384 * 3 2 1 6 6 H 1.07997 * 120.00305 * 275.25286 * 5 3 2 7 7 C 1.37883 * 120.00391 * 95.24954 * 5 3 2 8 8 N 1.31508 * 120.00379 * 183.27383 * 7 5 3 9 9 Si 1.86803 * 119.99542 * 3.27040 * 7 5 3 10 10 H 1.48495 * 109.47518 * 85.03473 * 9 7 5 11 11 H 1.48504 * 109.46890 * 205.03900 * 9 7 5 12 12 H 1.48505 * 109.47055 * 325.03127 * 9 7 5 13 13 C 1.50705 * 109.47401 * 65.64268 * 3 2 1 14 14 C 1.34513 * 125.79102 * 239.71805 * 13 3 2 15 15 C 1.41378 * 106.84130 * 179.88527 * 14 13 3 16 16 C 1.34514 * 106.84062 * 0.37298 * 15 14 13 17 17 C 1.50701 * 125.79051 * 179.74681 * 16 15 14 18 18 O 1.34299 * 108.41939 * 359.77047 * 16 15 14 19 19 H 1.09002 * 109.46448 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.47221 * 299.99510 * 1 2 3 21 21 H 1.08994 * 109.47352 * 60.00485 * 1 2 3 22 22 H 1.09004 * 109.47399 * 119.99524 * 2 1 3 23 23 H 1.08999 * 109.47504 * 240.00046 * 2 1 3 24 24 H 0.96997 * 120.00156 * 180.02562 * 8 7 5 25 25 H 1.08003 * 126.57846 * 0.02587 * 14 13 3 26 26 H 1.08003 * 126.58243 * 180.12113 * 15 14 13 27 27 H 1.08995 * 109.47016 * 180.02562 * 17 16 15 28 28 H 1.09002 * 109.47168 * 300.00188 * 17 16 15 29 29 H 1.09004 * 109.47007 * 60.00144 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 -0.8351 5 6 3.5404 1.4449 -0.1397 6 1 4.1643 1.3297 0.7342 7 6 4.1168 1.5942 -1.3833 8 7 5.4239 1.5319 -1.5141 9 14 3.0410 1.8849 -2.8825 10 1 2.7431 3.3345 -3.0046 11 1 3.7534 1.4215 -4.1004 12 1 1.7711 1.1293 -2.7345 13 6 1.6549 2.1115 1.2944 14 6 0.8889 3.2107 1.4143 15 6 0.7828 3.4871 2.7967 16 6 1.4972 2.5452 3.4385 17 6 1.6774 2.4401 4.9310 18 8 2.0232 1.7147 2.5234 19 1 -0.3632 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 5.8294 1.6373 -2.3889 25 1 0.4391 3.7727 0.6092 26 1 0.2367 4.3011 3.2503 27 1 2.3054 1.5796 5.1614 28 1 2.1530 3.3470 5.3044 29 1 0.7042 2.3179 5.4067 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084329984.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:11 Heat of formation + Delta-G solvation = -8.355560 kcal Electronic energy + Delta-G solvation = -12200.643391 eV Core-core repulsion = 10089.835966 eV Total energy + Delta-G solvation = -2110.807425 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.105 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.77543 -35.24782 -32.41231 -32.11170 -30.95529 -28.31610 -25.37631 -22.81251 -20.97308 -20.62751 -19.02469 -16.94983 -15.81729 -15.35834 -14.40889 -13.94883 -13.31260 -12.88198 -12.76185 -12.68325 -12.36485 -12.04679 -11.92764 -11.62884 -11.33539 -10.92267 -10.49860 -10.30499 -9.89930 -9.77881 -9.31268 -9.06913 -8.62189 -7.37988 -6.15340 -4.16046 2.55254 3.23170 3.32244 3.32841 3.40674 3.76623 4.34136 5.15240 5.34364 5.59553 5.69129 5.71692 5.77421 5.93472 5.95964 6.03813 6.11440 6.44133 6.54787 6.61088 6.68517 6.83335 6.91939 7.08066 7.28536 7.32930 7.58640 8.07376 8.43221 8.90904 9.44091 10.97500 Molecular weight = 194.10amu Principal moments of inertia in cm(-1) A = 0.040449 B = 0.012287 C = 0.011170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.072004 B = 2278.244411 C = 2506.077794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C 0.084 3.916 4 H 0.059 0.941 5 C -0.513 4.513 6 H 0.078 0.922 7 C 0.075 3.925 8 N -0.893 5.893 9 Si 0.871 3.129 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.260 1.260 13 C 0.070 3.930 14 C -0.259 4.259 15 C -0.207 4.207 16 C -0.056 4.056 17 C -0.064 4.064 18 O -0.167 6.167 19 H 0.042 0.958 20 H 0.047 0.953 21 H 0.046 0.954 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.266 0.734 25 H 0.136 0.864 26 H 0.135 0.865 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.318 0.887 6.072 11.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C 0.065 3.935 4 H 0.077 0.923 5 C -0.551 4.551 6 H 0.096 0.904 7 C -0.128 4.128 8 N -0.530 5.530 9 Si 0.698 3.302 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.185 1.185 13 C 0.019 3.981 14 C -0.278 4.278 15 C -0.226 4.226 16 C -0.105 4.105 17 C -0.121 4.121 18 O -0.063 6.063 19 H 0.061 0.939 20 H 0.066 0.934 21 H 0.065 0.935 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.154 0.846 26 H 0.153 0.847 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.963 0.644 6.008 10.810 hybrid contribution -0.524 0.522 -0.931 1.189 sum -9.488 1.166 5.077 10.824 Atomic orbital electron populations 1.21895 0.98065 1.00162 1.00986 1.21843 0.92967 0.98828 1.01865 1.18086 0.97784 0.91856 0.85724 0.92344 1.20874 0.88142 1.50617 0.95442 0.90397 1.25026 0.94903 0.94203 0.98619 1.69882 1.09573 1.49177 1.24341 0.86932 0.81297 0.79343 0.82648 1.19857 1.21131 1.18487 1.23291 0.94249 0.95620 0.84968 1.21393 1.08568 1.01463 0.96388 1.21336 1.05557 1.01767 0.93953 1.22174 1.02031 0.94331 0.91992 1.20125 1.02480 1.03147 0.86337 1.83995 1.59367 1.47609 1.15311 0.93876 0.93364 0.93503 0.92425 0.91926 0.92377 0.84626 0.84749 0.91088 0.90602 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.73 37.16 0.36 -2.41 15 2 C -0.12 -2.51 5.37 -26.73 -0.14 -2.66 15 3 C 0.08 2.03 1.81 -92.93 -0.17 1.86 15 4 H 0.06 1.39 5.31 -51.93 -0.28 1.11 15 5 C -0.51 -14.58 8.84 -34.44 -0.30 -14.88 15 6 H 0.08 2.46 8.06 -52.49 -0.42 2.03 15 7 C 0.08 2.15 5.47 -17.82 -0.10 2.05 15 8 N -0.89 -27.09 13.96 55.43 0.77 -26.32 15 9 Si 0.87 20.96 26.95 -169.99 -4.58 16.38 15 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 12 H -0.26 -5.89 6.87 56.52 0.39 -5.50 15 13 C 0.07 1.61 4.82 -35.62 -0.17 1.43 15 14 C -0.26 -5.35 10.78 -39.70 -0.43 -5.77 15 15 C -0.21 -3.79 10.81 -39.70 -0.43 -4.22 15 16 C -0.06 -1.04 7.32 -35.62 -0.26 -1.30 15 17 C -0.06 -0.85 10.42 36.01 0.38 -0.47 15 18 O -0.17 -3.75 10.65 5.73 0.06 -3.69 15 19 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 20 H 0.05 0.86 7.40 -51.93 -0.38 0.48 15 21 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 22 H 0.06 1.25 8.14 -51.93 -0.42 0.82 15 23 H 0.06 1.36 8.14 -51.93 -0.42 0.94 15 24 H 0.27 7.53 8.31 -40.82 -0.34 7.19 15 25 H 0.14 2.55 8.06 -52.48 -0.42 2.13 15 26 H 0.13 2.02 8.06 -52.48 -0.42 1.60 15 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 15 29 H 0.07 0.81 8.14 -51.93 -0.42 0.38 15 LS Contribution 250.21 15.07 3.77 3.77 Total: -1.00 -30.67 250.21 -5.28 -35.95 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -4.04 Total: 0.28 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: -1.27 Total: -26.37 kcal Atomic # 7 Polarization: -27.09 SS G_CDS: 0.77 Total: -26.32 kcal Atomic # 8 Polarization: -3.75 SS G_CDS: 0.06 Total: -3.69 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.58 Total: 16.38 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.67 -5.28 -35.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084329984.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.590 kcal (2) G-P(sol) polarization free energy of solvation -30.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds