Wall clock time and date at job start Mon Mar 30 2020 02:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35321 * 126.12853 * 2 1 4 4 C 1.50691 * 126.03586 * 0.03058 * 3 2 1 5 5 H 1.08998 * 109.48132 * 359.70913 * 4 3 2 6 6 C 1.53003 * 109.47204 * 239.70836 * 4 3 2 7 7 C 1.50700 * 109.47196 * 119.71354 * 4 3 2 8 8 H 1.08002 * 119.99948 * 5.36687 * 7 4 3 9 9 C 1.37878 * 120.00445 * 185.37043 * 7 4 3 10 10 N 1.31510 * 120.00494 * 185.16343 * 9 7 4 11 11 Si 1.86808 * 119.99744 * 5.16645 * 9 7 4 12 12 H 1.48504 * 109.46962 * 269.99748 * 11 9 7 13 13 H 1.48497 * 109.47094 * 29.99989 * 11 9 7 14 14 H 1.48497 * 109.47093 * 149.99990 * 11 9 7 15 15 C 1.39873 * 107.91763 * 179.76472 * 3 2 1 16 16 N 1.30832 * 108.20402 * 0.24006 * 15 3 2 17 17 N 1.34944 * 126.12725 * 180.18536 * 2 1 3 18 18 C 1.46503 * 126.03517 * 359.97438 * 17 2 1 19 19 H 1.08996 * 109.47688 * 89.99440 * 1 2 3 20 20 H 1.08999 * 109.47413 * 209.99684 * 1 2 3 21 21 H 1.09003 * 109.47016 * 329.99419 * 1 2 3 22 22 H 1.08996 * 109.47675 * 174.96618 * 6 4 3 23 23 H 1.09000 * 109.47175 * 294.96774 * 6 4 3 24 24 H 1.09005 * 109.47071 * 54.96576 * 6 4 3 25 25 H 0.97000 * 119.99735 * 355.00057 * 10 9 7 26 26 H 1.07993 * 125.89099 * 180.26755 * 15 3 2 27 27 H 1.09001 * 109.47429 * 270.31084 * 18 17 2 28 28 H 1.08994 * 109.47568 * 30.31612 * 18 17 2 29 29 H 1.08999 * 109.47167 * 150.31273 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 1.8433 2.5275 0.0007 5 1 0.7537 2.5588 -0.0041 6 6 2.3791 3.2362 -1.2449 7 6 2.3603 3.2210 1.2346 8 1 3.0334 2.7041 1.9026 9 6 1.9741 4.5154 1.5110 10 7 2.5028 5.1560 2.5306 11 14 0.6997 5.3593 0.4371 12 1 1.3810 6.0644 -0.6783 13 1 -0.2328 4.3441 -0.1151 14 1 -0.0621 6.3404 1.2509 15 6 3.6335 0.6559 0.0055 16 7 3.6333 -0.6525 0.0034 17 7 2.3026 -1.0900 -0.0035 18 6 1.8538 -2.4845 -0.0075 19 1 -0.3634 0.0001 -1.0276 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3633 0.8900 0.5139 22 1 1.9730 4.2466 -1.2911 23 1 3.4670 3.2839 -1.1961 24 1 2.0793 2.6831 -2.1350 25 1 3.1095 4.6951 3.1311 26 1 4.5083 1.2891 0.0109 27 1 1.7375 -2.8318 1.0191 28 1 0.8979 -2.5572 -0.5261 29 1 2.5922 -3.1024 -0.5186 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084330084.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:13 Heat of formation + Delta-G solvation = 64.501127 kcal Electronic energy + Delta-G solvation = -12222.796690 eV Core-core repulsion = 10147.441319 eV Total energy + Delta-G solvation = -2075.355371 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.61249 -34.68241 -32.76818 -31.79495 -30.17649 -26.24948 -25.94432 -24.50439 -21.50431 -19.78118 -18.35614 -17.26998 -15.69179 -15.13721 -14.30834 -13.67266 -13.50326 -12.95219 -12.66550 -12.52420 -12.29962 -12.06867 -11.70715 -11.63723 -11.10885 -10.69834 -10.36049 -10.22209 -9.63931 -9.45916 -8.63649 -8.59212 -8.33794 -7.45983 -6.29366 -3.96726 2.47385 3.07584 3.42892 3.47822 3.63921 3.64307 4.55853 4.89941 5.24570 5.31536 5.40346 5.48573 5.54142 5.74030 5.84253 6.20350 6.30319 6.39060 6.59039 6.61808 6.84201 6.96881 7.17928 7.40335 7.65007 7.68213 8.22625 8.40502 8.48893 9.01471 9.72942 11.07053 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.050868 B = 0.011394 C = 0.010700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.311575 B = 2456.776132 C = 2616.217583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.048 3.952 3 C -0.168 4.168 4 C 0.074 3.926 5 H 0.031 0.969 6 C -0.139 4.139 7 C -0.577 4.577 8 H 0.055 0.945 9 C 0.024 3.976 10 N -0.920 5.920 11 Si 1.057 2.943 12 H -0.285 1.285 13 H -0.279 1.279 14 H -0.293 1.293 15 C 0.060 3.940 16 N -0.318 5.318 17 N -0.390 5.390 18 C 0.110 3.890 19 H 0.069 0.931 20 H 0.059 0.941 21 H 0.088 0.912 22 H 0.040 0.960 23 H 0.048 0.952 24 H 0.024 0.976 25 H 0.266 0.734 26 H 0.176 0.824 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.662 -10.643 -6.745 13.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.076 4.076 3 C -0.179 4.179 4 C 0.054 3.946 5 H 0.049 0.951 6 C -0.196 4.196 7 C -0.616 4.616 8 H 0.074 0.926 9 C -0.179 4.179 10 N -0.555 5.555 11 Si 0.888 3.112 12 H -0.212 1.212 13 H -0.206 1.206 14 H -0.220 1.220 15 C -0.126 4.126 16 N -0.140 5.140 17 N -0.175 5.175 18 C -0.033 4.033 19 H 0.088 0.912 20 H 0.078 0.922 21 H 0.107 0.893 22 H 0.059 0.941 23 H 0.068 0.932 24 H 0.043 0.957 25 H 0.076 0.924 26 H 0.193 0.807 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.778 -10.413 -6.981 13.416 hybrid contribution 0.483 -0.813 0.383 1.020 sum -4.296 -11.225 -6.598 13.711 Atomic orbital electron populations 1.20336 0.88178 1.03363 1.02299 1.20757 0.94151 0.87159 1.05582 1.20253 0.91694 0.96463 1.09500 1.17708 0.95763 0.86421 0.94724 0.95082 1.22069 1.01180 0.98949 0.97437 1.22082 1.31041 1.00528 1.07905 0.92641 1.25773 0.98830 0.94665 0.98681 1.70804 1.30526 1.38278 1.15894 0.83824 0.76443 0.75780 0.75202 1.21171 1.20552 1.22000 1.23667 0.98548 0.91167 0.99177 1.77178 0.96626 1.13457 1.26691 1.48170 1.04062 1.05171 1.60127 1.21596 1.00286 0.79002 1.02375 0.91211 0.92188 0.89320 0.94128 0.93240 0.95656 0.92439 0.80653 0.91769 0.90313 0.90091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.25 9.53 36.00 0.34 -0.91 15 2 C 0.05 0.92 6.93 -82.27 -0.57 0.35 15 3 C -0.17 -3.74 4.75 -105.05 -0.50 -4.24 15 4 C 0.07 1.77 2.18 -92.93 -0.20 1.57 15 5 H 0.03 0.74 5.30 -51.93 -0.28 0.47 15 6 C -0.14 -3.06 8.64 37.16 0.32 -2.74 15 7 C -0.58 -16.32 8.78 -34.44 -0.30 -16.62 15 8 H 0.06 1.72 7.92 -52.49 -0.42 1.30 15 9 C 0.02 0.68 5.43 -17.82 -0.10 0.59 15 10 N -0.92 -28.66 13.70 55.43 0.76 -27.90 15 11 Si 1.06 25.58 25.29 -169.99 -4.30 21.28 15 12 H -0.28 -6.57 6.81 56.52 0.38 -6.19 15 13 H -0.28 -6.19 6.36 56.52 0.36 -5.83 15 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 15 15 C 0.06 1.29 11.58 -17.37 -0.20 1.09 15 16 N -0.32 -6.57 12.58 30.62 0.39 -6.18 15 17 N -0.39 -7.07 4.01 -63.89 -0.26 -7.33 15 18 C 0.11 1.34 11.09 59.85 0.66 2.00 15 19 H 0.07 0.91 8.14 -51.93 -0.42 0.48 15 20 H 0.06 0.73 7.74 -51.93 -0.40 0.33 15 21 H 0.09 1.43 7.15 -51.93 -0.37 1.06 15 22 H 0.04 0.89 4.40 -51.93 -0.23 0.67 15 23 H 0.05 1.08 8.14 -51.93 -0.42 0.66 15 24 H 0.02 0.49 8.14 -51.93 -0.42 0.06 15 25 H 0.27 8.29 8.72 -40.82 -0.36 7.93 15 26 H 0.18 3.59 8.06 -52.49 -0.42 3.17 15 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 15 28 H 0.08 0.75 7.68 -51.93 -0.40 0.35 15 29 H 0.08 0.89 8.14 -51.93 -0.42 0.46 15 LS Contribution 242.42 15.07 3.65 3.65 Total: -1.00 -32.74 242.42 -4.14 -36.88 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -3.84 Total: -1.50 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -0.54 Total: -18.90 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.89 Total: -41.41 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -4.30 Total: 21.28 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -32.74 -4.14 -36.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084330084.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.385 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds