Wall clock time and date at job start Mon Mar 30 2020 02:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35321 * 126.12853 * 2 1 4 4 C 1.50691 * 126.03586 * 0.03058 * 3 2 1 5 5 H 1.08998 * 109.48132 * 359.70913 * 4 3 2 6 6 C 1.53003 * 109.47204 * 239.70836 * 4 3 2 7 7 C 1.50700 * 109.47196 * 119.71354 * 4 3 2 8 8 H 1.08002 * 119.99948 * 5.36687 * 7 4 3 9 9 C 1.37878 * 120.00445 * 185.37043 * 7 4 3 10 10 N 1.31510 * 120.00494 * 185.16343 * 9 7 4 11 11 Si 1.86808 * 119.99744 * 5.16645 * 9 7 4 12 12 H 1.48504 * 109.46962 * 269.99748 * 11 9 7 13 13 H 1.48497 * 109.47094 * 29.99989 * 11 9 7 14 14 H 1.48497 * 109.47093 * 149.99990 * 11 9 7 15 15 C 1.39873 * 107.91763 * 179.76472 * 3 2 1 16 16 N 1.30832 * 108.20402 * 0.24006 * 15 3 2 17 17 N 1.34944 * 126.12725 * 180.18536 * 2 1 3 18 18 C 1.46503 * 126.03517 * 359.97438 * 17 2 1 19 19 H 1.08996 * 109.47688 * 89.99440 * 1 2 3 20 20 H 1.08999 * 109.47413 * 209.99684 * 1 2 3 21 21 H 1.09003 * 109.47016 * 329.99419 * 1 2 3 22 22 H 1.08996 * 109.47675 * 174.96618 * 6 4 3 23 23 H 1.09000 * 109.47175 * 294.96774 * 6 4 3 24 24 H 1.09005 * 109.47071 * 54.96576 * 6 4 3 25 25 H 0.97000 * 119.99735 * 355.00057 * 10 9 7 26 26 H 1.07993 * 125.89099 * 180.26755 * 15 3 2 27 27 H 1.09001 * 109.47429 * 270.31084 * 18 17 2 28 28 H 1.08994 * 109.47568 * 30.31612 * 18 17 2 29 29 H 1.08999 * 109.47167 * 150.31273 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 1.8433 2.5275 0.0007 5 1 0.7537 2.5588 -0.0041 6 6 2.3791 3.2362 -1.2449 7 6 2.3603 3.2210 1.2346 8 1 3.0334 2.7041 1.9026 9 6 1.9741 4.5154 1.5110 10 7 2.5028 5.1560 2.5306 11 14 0.6997 5.3593 0.4371 12 1 1.3810 6.0644 -0.6783 13 1 -0.2328 4.3441 -0.1151 14 1 -0.0621 6.3404 1.2509 15 6 3.6335 0.6559 0.0055 16 7 3.6333 -0.6525 0.0034 17 7 2.3026 -1.0900 -0.0035 18 6 1.8538 -2.4845 -0.0075 19 1 -0.3634 0.0001 -1.0276 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3633 0.8900 0.5139 22 1 1.9730 4.2466 -1.2911 23 1 3.4670 3.2839 -1.1961 24 1 2.0793 2.6831 -2.1350 25 1 3.1095 4.6951 3.1311 26 1 4.5083 1.2891 0.0109 27 1 1.7375 -2.8318 1.0191 28 1 0.8979 -2.5572 -0.5261 29 1 2.5922 -3.1024 -0.5186 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084330084.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:13 Heat of formation + Delta-G solvation = 41.786207 kcal Electronic energy + Delta-G solvation = -12223.781683 eV Core-core repulsion = 10147.441319 eV Total energy + Delta-G solvation = -2076.340364 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.11941 -36.54068 -34.24083 -33.67115 -31.70624 -27.60610 -27.27395 -26.57018 -23.28659 -21.34277 -19.96655 -19.36938 -17.13819 -16.46529 -16.10957 -15.32019 -15.06612 -14.44178 -14.29494 -13.91116 -13.62051 -13.51650 -13.26016 -12.98036 -12.88765 -12.41890 -12.17544 -11.87451 -11.47588 -11.22228 -10.73517 -10.53165 -10.04334 -9.12014 -8.53668 -6.28502 0.98395 1.49897 1.59875 1.77242 1.79146 1.99272 2.56504 3.19214 3.73652 3.93906 4.26857 4.43198 4.48490 4.59764 4.64310 4.67177 4.78137 4.94519 5.02704 5.07599 5.10255 5.33584 5.39631 5.73500 5.88602 6.10344 6.15348 6.35997 6.65637 6.84301 7.51493 8.74532 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.050868 B = 0.011394 C = 0.010700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.311575 B = 2456.776132 C = 2616.217583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.062 3.938 3 C -0.216 4.216 4 C 0.078 3.922 5 H 0.041 0.959 6 C -0.135 4.135 7 C -0.574 4.574 8 H 0.008 0.992 9 C -0.031 4.031 10 N -0.955 5.955 11 Si 1.094 2.906 12 H -0.266 1.266 13 H -0.241 1.241 14 H -0.297 1.297 15 C 0.039 3.961 16 N -0.336 5.336 17 N -0.382 5.382 18 C 0.095 3.905 19 H 0.098 0.902 20 H 0.093 0.907 21 H 0.075 0.925 22 H 0.041 0.959 23 H 0.037 0.963 24 H 0.054 0.946 25 H 0.247 0.753 26 H 0.167 0.833 27 H 0.079 0.921 28 H 0.115 0.885 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.094 -12.273 -8.703 16.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.065 4.065 3 C -0.227 4.227 4 C 0.058 3.942 5 H 0.059 0.941 6 C -0.193 4.193 7 C -0.612 4.612 8 H 0.026 0.974 9 C -0.226 4.226 10 N -0.592 5.592 11 Si 0.916 3.084 12 H -0.191 1.191 13 H -0.165 1.165 14 H -0.224 1.224 15 C -0.145 4.145 16 N -0.159 5.159 17 N -0.167 5.167 18 C -0.045 4.045 19 H 0.117 0.883 20 H 0.112 0.888 21 H 0.094 0.906 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.185 0.815 27 H 0.098 0.902 28 H 0.133 0.867 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.188 -12.101 -8.949 16.679 hybrid contribution 1.275 -0.497 1.048 1.723 sum -5.913 -12.598 -7.902 16.003 Atomic orbital electron populations 1.20512 0.84808 1.04404 1.04462 1.21330 0.96096 0.86529 1.02539 1.20232 0.92467 0.96583 1.13401 1.17566 0.95969 0.87562 0.93106 0.94118 1.21976 1.00463 0.99113 0.97719 1.22286 1.29460 1.00611 1.08847 0.97372 1.27321 1.00247 0.95921 0.99121 1.70951 1.32085 1.38757 1.17448 0.83427 0.74806 0.75922 0.74220 1.19139 1.16475 1.22406 1.23636 0.98656 0.91815 1.00398 1.77100 0.98643 1.12783 1.27383 1.48643 1.02994 1.07165 1.57880 1.22129 1.02314 0.75849 1.04187 0.88308 0.88847 0.90611 0.94062 0.94371 0.92672 0.94455 0.81547 0.90233 0.86669 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.13 9.53 71.23 0.68 -1.45 15 2 C 0.06 2.22 6.93 41.41 0.29 2.51 15 3 C -0.22 -9.44 4.75 -20.14 -0.10 -9.53 15 4 C 0.08 3.67 2.18 -12.29 -0.03 3.64 15 5 H 0.04 1.83 5.30 -2.39 -0.01 1.82 15 6 C -0.14 -5.74 8.64 71.98 0.62 -5.12 15 7 C -0.57 -33.32 8.78 25.60 0.22 -33.10 15 8 H 0.01 0.52 7.92 -2.91 -0.02 0.50 15 9 C -0.03 -1.83 5.43 84.66 0.46 -1.37 15 10 N -0.95 -61.67 13.70 21.45 0.29 -61.37 15 11 Si 1.09 50.24 25.29 68.60 1.73 51.97 15 12 H -0.27 -11.35 6.81 99.48 0.68 -10.67 15 13 H -0.24 -9.51 6.36 99.48 0.63 -8.88 15 14 H -0.30 -13.76 7.11 99.48 0.71 -13.05 15 15 C 0.04 1.72 11.58 85.24 0.99 2.70 15 16 N -0.34 -13.70 12.58 -57.03 -0.72 -14.42 15 17 N -0.38 -12.84 4.01 -356.03 -1.43 -14.27 15 18 C 0.09 1.91 11.09 127.77 1.42 3.33 15 19 H 0.10 2.01 8.14 -2.39 -0.02 1.99 15 20 H 0.09 1.76 7.74 -2.39 -0.02 1.74 15 21 H 0.08 2.18 7.15 -2.39 -0.02 2.16 15 22 H 0.04 1.71 4.40 -2.39 -0.01 1.70 15 23 H 0.04 1.65 8.14 -2.39 -0.02 1.63 15 24 H 0.05 1.99 8.14 -2.38 -0.02 1.97 15 25 H 0.25 16.32 8.72 -92.71 -0.81 15.51 15 26 H 0.17 7.27 8.06 -2.91 -0.02 7.25 15 27 H 0.08 1.42 8.14 -2.39 -0.02 1.40 15 28 H 0.11 1.53 7.68 -2.39 -0.02 1.51 15 29 H 0.09 1.69 8.14 -2.39 -0.02 1.67 15 Total: -1.00 -73.65 242.42 5.42 -68.22 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 0.99 Total: 8.25 kcal Atomic # 6 Polarization: -42.94 SS G_CDS: 4.55 Total: -38.39 kcal Atomic # 7 Polarization: -88.20 SS G_CDS: -1.85 Total: -90.06 kcal Atomic # 14 Polarization: 50.24 SS G_CDS: 1.73 Total: 51.97 kcal Total: -73.65 5.42 -68.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084330084.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.008 kcal (2) G-P(sol) polarization free energy of solvation -73.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds