Wall clock time and date at job start Mon Mar 30 2020 02:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36349 * 125.63299 * 2 1 4 4 C 1.34850 * 108.21430 * 179.82807 * 3 2 1 5 5 C 1.40887 * 107.41900 * 0.42861 * 4 3 2 6 6 C 1.34847 * 107.41599 * 359.73303 * 5 4 3 7 7 C 1.50703 * 125.88725 * 179.97438 * 6 5 4 8 8 C 1.53007 * 109.46755 * 120.02618 * 7 6 5 9 9 N 1.46895 * 109.47616 * 240.02571 * 7 6 5 10 10 C 1.50696 * 109.47557 * 0.03102 * 7 6 5 11 11 H 1.08012 * 119.99974 * 0.09293 * 10 7 6 12 12 C 1.37875 * 120.00655 * 180.09849 * 10 7 6 13 13 N 1.31520 * 119.99550 * 5.99907 * 12 10 7 14 14 Si 1.86800 * 120.00404 * 185.99392 * 12 10 7 15 15 H 1.48500 * 109.47077 * 84.98916 * 14 12 10 16 16 H 1.48496 * 109.46985 * 204.99024 * 14 12 10 17 17 H 1.48503 * 109.47209 * 324.98930 * 14 12 10 18 18 H 1.08995 * 109.47279 * 269.68758 * 1 2 3 19 19 H 1.08999 * 109.46971 * 149.68845 * 1 2 3 20 20 H 1.08998 * 109.47275 * 29.69620 * 1 2 3 21 21 H 1.07997 * 125.88955 * 0.02562 * 3 2 1 22 22 H 1.08002 * 126.29145 * 180.16285 * 4 3 2 23 23 H 1.08004 * 126.28987 * 179.73496 * 5 4 3 24 24 H 1.09000 * 109.47123 * 64.41382 * 8 7 6 25 25 H 1.09004 * 109.47041 * 184.41331 * 8 7 6 26 26 H 1.08997 * 109.47322 * 304.41192 * 8 7 6 27 27 H 1.00903 * 110.99913 * 60.00096 * 9 7 6 28 28 H 1.00899 * 111.00590 * 183.95680 * 9 7 6 29 29 H 0.97001 * 119.99518 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1082 0.0000 4 6 3.5460 0.7045 0.0038 5 6 3.5460 -0.7043 -0.0037 6 6 2.2594 -1.1080 -0.0059 7 6 1.7819 -2.5373 -0.0142 8 6 0.9359 -2.7996 1.2334 9 7 0.9704 -2.7757 -1.2152 10 6 2.9703 -3.4640 -0.0190 11 1 3.9714 -3.0584 -0.0148 12 6 2.7799 -4.8295 -0.0288 13 7 1.5673 -5.3234 -0.1531 14 14 4.2441 -5.9780 0.1342 15 1 4.5606 -6.1755 1.5716 16 1 3.9173 -7.2875 -0.4852 17 1 5.4182 -5.3840 -0.5542 18 1 -0.3633 -0.0056 1.0276 19 1 -0.3633 -0.8872 -0.5187 20 1 -0.3634 0.8927 -0.5091 21 1 1.9170 2.1325 0.0004 22 1 4.4165 1.3438 0.0073 23 1 4.4166 -1.3435 -0.0071 24 1 0.0361 -2.1853 1.1979 25 1 0.6559 -3.8525 1.2678 26 1 1.5128 -2.5478 2.1232 27 1 1.5071 -2.6091 -2.0532 28 1 0.5850 -3.7082 -1.2121 29 1 1.4333 -6.2841 -0.1596 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084330135.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:08 Heat of formation + Delta-G solvation = 48.616465 kcal Electronic energy + Delta-G solvation = -12563.474521 eV Core-core repulsion = 10487.430340 eV Total energy + Delta-G solvation = -2076.044181 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.30356 -35.36675 -32.06833 -31.31755 -28.06348 -26.72004 -25.55717 -25.12179 -20.88210 -19.63022 -18.07150 -16.13437 -15.87762 -14.60361 -14.41826 -13.90559 -13.39337 -12.67995 -12.35214 -12.25349 -11.87066 -11.35996 -11.27503 -11.19069 -10.97937 -10.63461 -10.45031 -10.12851 -9.77221 -9.49350 -8.59507 -7.69043 -7.20099 -7.01909 -6.06497 -4.19801 3.19885 3.26871 3.32760 3.36441 3.90007 4.01010 4.37057 5.16708 5.50220 5.74789 5.84108 6.14554 6.19089 6.35096 6.48147 6.64102 6.89067 7.00267 7.20458 7.27063 7.48331 7.74204 7.86281 7.97144 8.09988 8.30057 8.40456 8.76671 8.97422 9.16230 9.52935 10.90390 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.048975 B = 0.013262 C = 0.011235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.583616 B = 2110.815281 C = 2491.541922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.442 5.442 3 C -0.053 4.053 4 C -0.209 4.209 5 C -0.212 4.212 6 C 0.078 3.922 7 C 0.292 3.708 8 C -0.127 4.127 9 N -0.850 5.850 10 C -0.530 4.530 11 H 0.064 0.936 12 C 0.066 3.934 13 N -0.895 5.895 14 Si 0.897 3.103 15 H -0.279 1.279 16 H -0.288 1.288 17 H -0.274 1.274 18 H 0.056 0.944 19 H 0.106 0.894 20 H 0.062 0.938 21 H 0.145 0.855 22 H 0.120 0.880 23 H 0.131 0.869 24 H 0.019 0.981 25 H 0.080 0.920 26 H 0.029 0.971 27 H 0.315 0.685 28 H 0.359 0.641 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.637 6.599 0.107 6.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.117 5.117 3 C -0.182 4.182 4 C -0.235 4.235 5 C -0.236 4.236 6 C -0.035 4.035 7 C 0.200 3.800 8 C -0.185 4.185 9 N -0.381 5.381 10 C -0.570 4.570 11 H 0.083 0.917 12 C -0.136 4.136 13 N -0.535 5.535 14 Si 0.725 3.275 15 H -0.205 1.205 16 H -0.214 1.214 17 H -0.199 1.199 18 H 0.074 0.926 19 H 0.125 0.875 20 H 0.081 0.919 21 H 0.163 0.837 22 H 0.138 0.862 23 H 0.149 0.851 24 H 0.038 0.962 25 H 0.098 0.902 26 H 0.049 0.951 27 H 0.124 0.876 28 H 0.177 0.823 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.609 7.010 0.386 7.489 hybrid contribution 1.545 -1.283 -0.019 2.008 sum -1.065 5.726 0.367 5.836 Atomic orbital electron populations 1.22037 0.78445 1.04354 1.01962 1.43875 1.05704 1.05798 1.56316 1.21497 0.90924 0.90927 1.14833 1.20758 0.95216 0.95545 1.11977 1.20719 0.96384 0.93673 1.12777 1.21160 0.89536 0.89082 1.03689 1.16887 0.90836 0.83373 0.88900 1.21763 0.96877 1.02893 0.96988 1.59425 1.38937 1.35871 1.03913 1.21860 0.93611 0.90908 1.50646 0.91742 1.24953 0.96015 0.98114 0.94477 1.69639 1.20270 1.12939 1.50689 0.86515 0.82783 0.79791 0.78369 1.20549 1.21359 1.19913 0.92555 0.87524 0.91872 0.83728 0.86172 0.85116 0.96219 0.90168 0.95140 0.87578 0.82340 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.24 9.51 59.84 0.57 1.81 15 2 N -0.44 -8.87 3.15 -119.91 -0.38 -9.24 15 3 C -0.05 -0.98 11.43 -16.75 -0.19 -1.17 15 4 C -0.21 -4.14 10.86 -39.78 -0.43 -4.57 15 5 C -0.21 -4.83 9.87 -39.78 -0.39 -5.22 15 6 C 0.08 1.81 5.67 -81.79 -0.46 1.35 15 7 C 0.29 7.13 0.54 -133.91 -0.07 7.06 15 8 C -0.13 -3.05 8.39 37.16 0.31 -2.73 15 9 N -0.85 -19.84 7.53 -1.14 -0.01 -19.84 15 10 C -0.53 -14.10 7.93 -34.44 -0.27 -14.38 15 11 H 0.06 1.74 5.64 -52.48 -0.30 1.45 15 12 C 0.07 1.73 5.17 -17.82 -0.09 1.64 15 13 N -0.90 -23.67 9.63 55.43 0.53 -23.14 15 14 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 15 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 16 H -0.29 -6.65 7.11 56.52 0.40 -6.25 15 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 18 H 0.06 0.87 7.90 -51.93 -0.41 0.46 15 19 H 0.11 1.93 6.29 -51.93 -0.33 1.60 15 20 H 0.06 0.86 8.14 -51.93 -0.42 0.43 15 21 H 0.15 2.15 8.06 -52.49 -0.42 1.73 15 22 H 0.12 2.05 8.06 -52.49 -0.42 1.63 15 23 H 0.13 3.03 6.38 -52.48 -0.33 2.69 15 24 H 0.02 0.42 6.12 -51.93 -0.32 0.10 15 25 H 0.08 2.07 6.21 -51.93 -0.32 1.74 15 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 15 27 H 0.32 7.41 8.98 -39.29 -0.35 7.06 15 28 H 0.36 8.88 6.78 -39.29 -0.27 8.61 15 29 H 0.26 6.75 8.31 -40.82 -0.34 6.41 15 LS Contribution 235.58 15.07 3.55 3.55 Total: -1.00 -27.38 235.58 -5.81 -33.19 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -3.45 Total: 15.86 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -1.04 Total: -16.23 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: 0.15 Total: -52.22 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -27.38 -5.81 -33.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084330135.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.807 kcal (2) G-P(sol) polarization free energy of solvation -27.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds