Wall clock time and date at job start Mon Mar 30 2020 02:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36349 * 125.63299 * 2 1 4 4 C 1.34850 * 108.21430 * 179.82807 * 3 2 1 5 5 C 1.40887 * 107.41900 * 0.42861 * 4 3 2 6 6 C 1.34847 * 107.41599 * 359.73303 * 5 4 3 7 7 C 1.50703 * 125.88725 * 179.97438 * 6 5 4 8 8 C 1.53007 * 109.46755 * 120.02618 * 7 6 5 9 9 N 1.46895 * 109.47616 * 240.02571 * 7 6 5 10 10 C 1.50696 * 109.47557 * 0.03102 * 7 6 5 11 11 H 1.08012 * 119.99974 * 0.09293 * 10 7 6 12 12 C 1.37875 * 120.00655 * 180.09849 * 10 7 6 13 13 N 1.31520 * 119.99550 * 5.99907 * 12 10 7 14 14 Si 1.86800 * 120.00404 * 185.99392 * 12 10 7 15 15 H 1.48500 * 109.47077 * 84.98916 * 14 12 10 16 16 H 1.48496 * 109.46985 * 204.99024 * 14 12 10 17 17 H 1.48503 * 109.47209 * 324.98930 * 14 12 10 18 18 H 1.08995 * 109.47279 * 269.68758 * 1 2 3 19 19 H 1.08999 * 109.46971 * 149.68845 * 1 2 3 20 20 H 1.08998 * 109.47275 * 29.69620 * 1 2 3 21 21 H 1.07997 * 125.88955 * 0.02562 * 3 2 1 22 22 H 1.08002 * 126.29145 * 180.16285 * 4 3 2 23 23 H 1.08004 * 126.28987 * 179.73496 * 5 4 3 24 24 H 1.09000 * 109.47123 * 64.41382 * 8 7 6 25 25 H 1.09004 * 109.47041 * 184.41331 * 8 7 6 26 26 H 1.08997 * 109.47322 * 304.41192 * 8 7 6 27 27 H 1.00903 * 110.99913 * 60.00096 * 9 7 6 28 28 H 1.00899 * 111.00590 * 183.95680 * 9 7 6 29 29 H 0.97001 * 119.99518 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1082 0.0000 4 6 3.5460 0.7045 0.0038 5 6 3.5460 -0.7043 -0.0037 6 6 2.2594 -1.1080 -0.0059 7 6 1.7819 -2.5373 -0.0142 8 6 0.9359 -2.7996 1.2334 9 7 0.9704 -2.7757 -1.2152 10 6 2.9703 -3.4640 -0.0190 11 1 3.9714 -3.0584 -0.0148 12 6 2.7799 -4.8295 -0.0288 13 7 1.5673 -5.3234 -0.1531 14 14 4.2441 -5.9780 0.1342 15 1 4.5606 -6.1755 1.5716 16 1 3.9173 -7.2875 -0.4852 17 1 5.4182 -5.3840 -0.5542 18 1 -0.3633 -0.0056 1.0276 19 1 -0.3633 -0.8872 -0.5187 20 1 -0.3634 0.8927 -0.5091 21 1 1.9170 2.1325 0.0004 22 1 4.4165 1.3438 0.0073 23 1 4.4166 -1.3435 -0.0071 24 1 0.0361 -2.1853 1.1979 25 1 0.6559 -3.8525 1.2678 26 1 1.5128 -2.5478 2.1232 27 1 1.5071 -2.6091 -2.0532 28 1 0.5850 -3.7082 -1.2121 29 1 1.4333 -6.2841 -0.1596 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084330135.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:08 Heat of formation + Delta-G solvation = 31.355766 kcal Electronic energy + Delta-G solvation = -12564.223001 eV Core-core repulsion = 10487.430340 eV Total energy + Delta-G solvation = -2076.792662 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.87929 -37.25373 -33.63822 -33.21591 -29.83790 -28.47900 -27.20424 -26.90206 -22.67642 -21.23369 -19.70842 -17.95119 -17.69349 -16.44816 -15.94094 -15.67383 -15.18278 -14.40171 -13.98272 -13.82775 -13.56010 -13.05058 -12.91353 -12.84936 -12.74956 -12.43581 -12.35680 -12.03120 -11.65173 -11.39259 -10.60531 -9.24533 -9.13295 -8.63809 -8.05862 -6.26085 1.39225 1.42022 1.49939 1.65634 2.34547 2.35807 2.51662 3.12515 4.24138 4.36525 4.42113 4.56250 4.58319 4.83700 4.92187 4.96557 5.08544 5.11849 5.44064 5.55673 5.73793 5.76116 5.89269 6.17545 6.34810 6.57559 6.81154 6.87046 7.02938 7.18048 7.50329 8.87402 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.048975 B = 0.013262 C = 0.011235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.583616 B = 2110.815281 C = 2491.541922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.444 5.444 3 C -0.033 4.033 4 C -0.225 4.225 5 C -0.236 4.236 6 C 0.047 3.953 7 C 0.289 3.711 8 C -0.116 4.116 9 N -0.835 5.835 10 C -0.551 4.551 11 H 0.050 0.950 12 C 0.029 3.971 13 N -0.907 5.907 14 Si 0.951 3.049 15 H -0.279 1.279 16 H -0.282 1.282 17 H -0.277 1.277 18 H 0.068 0.932 19 H 0.088 0.912 20 H 0.101 0.899 21 H 0.191 0.809 22 H 0.145 0.855 23 H 0.111 0.889 24 H 0.038 0.962 25 H 0.058 0.942 26 H 0.020 0.980 27 H 0.312 0.688 28 H 0.350 0.650 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.069 8.058 0.102 8.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.119 5.119 3 C -0.162 4.162 4 C -0.250 4.250 5 C -0.260 4.260 6 C -0.067 4.067 7 C 0.197 3.803 8 C -0.175 4.175 9 N -0.364 5.364 10 C -0.591 4.591 11 H 0.068 0.932 12 C -0.171 4.171 13 N -0.546 5.546 14 Si 0.777 3.223 15 H -0.205 1.205 16 H -0.207 1.207 17 H -0.202 1.202 18 H 0.086 0.914 19 H 0.107 0.893 20 H 0.119 0.881 21 H 0.208 0.792 22 H 0.162 0.838 23 H 0.129 0.871 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.039 0.961 27 H 0.121 0.879 28 H 0.166 0.834 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.057 8.475 0.381 9.017 hybrid contribution 1.667 -1.679 -0.018 2.366 sum -1.390 6.795 0.362 6.946 Atomic orbital electron populations 1.22219 0.76498 1.05422 1.03056 1.44074 1.06974 1.05270 1.55543 1.22201 0.90231 0.92272 1.11529 1.21043 0.97075 0.94226 1.12621 1.20818 0.95954 0.95460 1.13791 1.20910 0.90288 0.89332 1.06153 1.16813 0.90112 0.84359 0.89017 1.21621 0.97476 1.01763 0.96593 1.59428 1.38420 1.34979 1.03572 1.22085 0.93934 0.91866 1.51221 0.93153 1.25526 0.98101 0.99137 0.94302 1.69717 1.21195 1.13119 1.50616 0.85688 0.80212 0.78278 0.78083 1.20539 1.20717 1.20200 0.91360 0.89288 0.88094 0.79169 0.83769 0.87061 0.94264 0.92277 0.96116 0.87918 0.83369 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.09 9.51 127.77 1.22 3.31 15 2 N -0.44 -16.73 3.15 -533.27 -1.68 -18.41 15 3 C -0.03 -1.10 11.43 83.21 0.95 -0.15 15 4 C -0.22 -8.42 10.86 22.14 0.24 -8.18 15 5 C -0.24 -10.75 9.87 22.14 0.22 -10.54 15 6 C 0.05 2.14 5.67 41.08 0.23 2.37 15 7 C 0.29 14.20 0.54 2.04 0.00 14.20 15 8 C -0.12 -5.59 8.39 71.98 0.60 -4.98 15 9 N -0.83 -39.01 7.53 -157.51 -1.19 -40.20 15 10 C -0.55 -29.85 7.93 25.60 0.20 -29.64 15 11 H 0.05 2.81 5.64 -2.90 -0.02 2.80 15 12 C 0.03 1.56 5.17 84.65 0.44 1.99 15 13 N -0.91 -48.16 9.63 21.45 0.21 -47.96 15 14 Si 0.95 43.17 29.54 68.60 2.03 45.19 15 15 H -0.28 -12.62 7.11 99.48 0.71 -11.91 15 16 H -0.28 -12.44 7.11 99.48 0.71 -11.73 15 17 H -0.28 -12.59 7.11 99.48 0.71 -11.89 15 18 H 0.07 1.90 7.90 -2.39 -0.02 1.88 15 19 H 0.09 3.04 6.29 -2.39 -0.02 3.02 15 20 H 0.10 2.28 8.14 -2.39 -0.02 2.26 15 21 H 0.19 4.55 8.06 -2.91 -0.02 4.53 15 22 H 0.14 4.55 8.06 -2.91 -0.02 4.53 15 23 H 0.11 5.36 6.38 -2.91 -0.02 5.34 15 24 H 0.04 1.67 6.12 -2.39 -0.01 1.65 15 25 H 0.06 3.07 6.21 -2.38 -0.01 3.05 15 26 H 0.02 0.98 8.14 -2.39 -0.02 0.96 15 27 H 0.31 14.78 8.98 -89.69 -0.81 13.97 15 28 H 0.35 17.43 6.78 -89.69 -0.61 16.82 15 29 H 0.27 13.55 8.31 -92.71 -0.77 12.78 15 Total: -1.00 -58.16 235.58 3.22 -54.93 By element: Atomic # 1 Polarization: 38.31 SS G_CDS: -0.25 Total: 38.06 kcal Atomic # 6 Polarization: -35.73 SS G_CDS: 4.10 Total: -31.62 kcal Atomic # 7 Polarization: -103.91 SS G_CDS: -2.66 Total: -106.57 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -58.16 3.22 -54.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084330135.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.287 kcal (2) G-P(sol) polarization free energy of solvation -58.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds