Wall clock time and date at job start Mon Mar 30 2020 02:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00429 * 2 1 4 4 H 1.48504 * 109.46944 * 270.00537 * 3 2 1 5 5 H 1.48498 * 109.47052 * 29.99867 * 3 2 1 6 6 H 1.48495 * 109.47406 * 150.00325 * 3 2 1 7 7 C 1.37876 * 119.99884 * 180.27523 * 2 1 3 8 8 H 1.08004 * 119.99987 * 350.14585 * 7 2 1 9 9 C 1.50702 * 120.00102 * 170.14934 * 7 2 1 10 10 H 1.08996 * 109.47017 * 359.44949 * 9 7 2 11 11 C 1.53005 * 109.46855 * 119.44900 * 9 7 2 12 12 C 1.53001 * 117.50080 * 4.33715 * 11 9 7 13 13 C 1.53004 * 117.49939 * 295.67341 * 11 9 7 14 14 C 1.53002 * 109.47023 * 239.44439 * 9 7 2 15 15 C 1.54268 * 110.02965 * 180.20293 * 14 9 7 16 16 C 1.54891 * 104.19395 * 217.10772 * 15 14 9 17 17 C 1.54884 * 102.74874 * 37.94667 * 16 15 14 18 18 C 1.53876 * 110.02885 * 63.04059 * 14 9 7 19 19 H 0.97000 * 119.99575 * 359.72540 * 1 2 3 20 20 H 1.09005 * 115.54588 * 150.01069 * 11 9 7 21 21 H 1.08991 * 117.49810 * 359.97438 * 12 11 9 22 22 H 1.08994 * 117.49841 * 145.02270 * 12 11 9 23 23 H 1.09000 * 117.49995 * 214.98112 * 13 11 9 24 24 H 1.08999 * 117.49309 * 359.97438 * 13 11 9 25 25 H 1.08995 * 110.02045 * 301.64818 * 14 9 7 26 26 H 1.09003 * 110.49122 * 335.78507 * 15 14 9 27 27 H 1.08995 * 110.48674 * 98.43083 * 15 14 9 28 28 H 1.08996 * 110.75634 * 279.62751 * 16 15 14 29 29 H 1.09006 * 110.91168 * 156.33128 * 16 15 14 30 30 H 1.09002 * 110.48848 * 203.37541 * 17 16 15 31 31 H 1.09003 * 110.60312 * 80.78675 * 17 16 15 32 32 H 1.09001 * 110.03180 * 238.56499 * 18 14 9 33 33 H 1.09001 * 110.03418 * 359.97438 * 18 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0057 8 1 1.4764 -2.1232 0.1499 9 6 3.4949 -1.2026 -0.2291 10 1 3.8462 -0.1813 -0.3756 11 6 4.1898 -1.8110 0.9908 12 6 3.3016 -2.3670 2.1057 13 6 4.0707 -1.0607 2.3189 14 6 3.8198 -2.0369 -1.4698 15 6 5.3439 -2.0585 -1.7076 16 6 5.4884 -2.0118 -3.2491 17 6 4.3524 -1.0468 -3.6698 18 6 3.1894 -1.3935 -2.7174 19 1 -0.4849 0.8401 0.0040 20 1 5.1269 -2.3295 0.7880 21 1 2.2223 -2.2991 1.9703 22 1 3.6545 -3.2511 2.6366 23 1 4.9292 -1.0860 2.9901 24 1 3.4976 -0.1335 2.3234 25 1 3.4462 -3.0531 -1.3445 26 1 5.8134 -1.1857 -1.2538 27 1 5.7788 -2.9761 -1.3114 28 1 5.3355 -3.0005 -3.6816 29 1 6.4610 -1.6122 -3.5367 30 1 4.0636 -1.2259 -4.7055 31 1 4.6600 -0.0099 -3.5344 32 1 2.5104 -2.0979 -3.1980 33 1 2.6515 -0.4873 -2.4388 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084330143.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:58 Heat of formation + Delta-G solvation = -1.755536 kcal Electronic energy + Delta-G solvation = -12814.002211 eV Core-core repulsion = 10839.314079 eV Total energy + Delta-G solvation = -1974.688132 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.22659 -35.94201 -32.44727 -30.16075 -28.04944 -25.90707 -23.01827 -21.47030 -20.21037 -19.26974 -18.17468 -16.80331 -15.16841 -14.80570 -14.12380 -14.01628 -13.24324 -12.66157 -12.42696 -12.07836 -11.85641 -10.92456 -10.84471 -10.54858 -10.52176 -10.30948 -10.14600 -10.09744 -9.92513 -9.58841 -9.51581 -9.14476 -8.92049 -8.53440 -8.35062 -6.04360 -3.98873 3.29701 3.39409 3.42788 4.45333 4.88763 5.19027 5.32807 5.37000 5.42994 5.78602 6.02248 6.08795 6.10585 6.15075 6.22668 6.28257 6.38280 6.46816 6.47853 6.50007 6.54164 6.73303 6.87559 6.93496 7.02130 7.16089 7.20889 7.36759 7.49647 7.55230 7.87239 8.60157 9.02658 9.60763 11.09007 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.028165 B = 0.017449 C = 0.013280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.912706 B = 1604.264644 C = 2107.876999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.072 3.928 3 Si 0.863 3.137 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.260 1.260 7 C -0.495 4.495 8 H 0.074 0.926 9 C 0.044 3.956 10 H 0.036 0.964 11 C -0.139 4.139 12 C -0.171 4.171 13 C -0.190 4.190 14 C -0.072 4.072 15 C -0.123 4.123 16 C -0.124 4.124 17 C -0.128 4.128 18 C -0.108 4.108 19 H 0.261 0.739 20 H 0.077 0.923 21 H 0.115 0.885 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.088 0.912 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.103 -2.059 -2.651 9.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.129 4.129 3 Si 0.691 3.309 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.185 1.185 7 C -0.532 4.532 8 H 0.092 0.908 9 C 0.025 3.975 10 H 0.054 0.946 11 C -0.158 4.158 12 C -0.208 4.208 13 C -0.227 4.227 14 C -0.091 4.091 15 C -0.161 4.161 16 C -0.162 4.162 17 C -0.166 4.166 18 C -0.146 4.146 19 H 0.071 0.929 20 H 0.095 0.905 21 H 0.133 0.867 22 H 0.083 0.917 23 H 0.088 0.912 24 H 0.107 0.893 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.921 -1.936 -2.649 9.505 hybrid contribution 0.385 0.970 0.081 1.047 sum 9.306 -0.967 -2.567 9.702 Atomic orbital electron populations 1.69926 1.06243 1.26701 1.51041 1.25043 0.94523 0.98527 0.94762 0.87093 0.80677 0.84446 0.78667 1.20386 1.21888 1.18524 1.20921 0.89978 0.94455 1.47870 0.90754 1.18932 0.95769 0.94122 0.88686 0.94563 1.22655 0.98828 1.02836 0.91463 1.22992 1.00847 0.94586 1.02327 1.22745 1.02142 0.97220 1.00612 1.21755 0.91638 0.99648 0.96019 1.22535 0.98346 1.00559 0.94639 1.22484 0.97716 0.99092 0.96887 1.22421 0.96585 0.98812 0.98750 1.22058 0.96305 1.01538 0.94699 0.92863 0.90485 0.86693 0.91655 0.91178 0.89334 0.92260 0.92185 0.92845 0.92222 0.92855 0.92825 0.92513 0.92938 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.94 13.96 55.43 0.77 -26.17 16 2 C 0.07 2.02 5.28 -17.82 -0.09 1.93 16 3 Si 0.86 21.36 26.24 -169.99 -4.46 16.90 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.26 -6.22 6.26 56.52 0.35 -5.86 16 7 C -0.49 -13.12 5.94 -34.44 -0.20 -13.33 16 8 H 0.07 2.17 7.40 -52.48 -0.39 1.78 16 9 C 0.04 0.99 1.30 -91.77 -0.12 0.88 16 10 H 0.04 0.87 4.77 -51.93 -0.25 0.62 16 11 C -0.14 -2.89 5.50 -90.61 -0.50 -3.39 16 12 C -0.17 -3.50 9.67 -26.69 -0.26 -3.76 16 13 C -0.19 -3.86 10.11 -26.69 -0.27 -4.13 16 14 C -0.07 -1.44 2.50 -89.50 -0.22 -1.67 16 15 C -0.12 -2.08 5.13 -25.07 -0.13 -2.21 16 16 C -0.12 -1.87 6.91 -24.74 -0.17 -2.04 16 17 C -0.13 -2.12 6.83 -25.07 -0.17 -2.29 16 18 C -0.11 -2.17 6.06 -25.61 -0.16 -2.33 16 19 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 20 H 0.08 1.45 7.04 -51.93 -0.37 1.08 16 21 H 0.11 2.68 6.08 -51.93 -0.32 2.36 16 22 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 23 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 24 H 0.09 1.97 7.13 -51.93 -0.37 1.60 16 25 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 26 H 0.06 1.03 7.84 -51.93 -0.41 0.62 16 27 H 0.05 0.83 8.04 -51.93 -0.42 0.41 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.67 6.81 -51.93 -0.35 1.31 16 LS Contribution 254.44 15.07 3.83 3.83 Total: -1.00 -27.90 254.44 -7.58 -35.47 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -5.43 Total: 2.31 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: -2.29 Total: -32.35 kcal Atomic # 7 Polarization: -26.94 SS G_CDS: 0.77 Total: -26.17 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.46 Total: 16.90 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -27.90 -7.58 -35.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084330143.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.717 kcal (2) G-P(sol) polarization free energy of solvation -27.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds