Wall clock time and date at job start Mon Mar 30 2020 02:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00429 * 2 1 4 4 H 1.48504 * 109.46944 * 270.00537 * 3 2 1 5 5 H 1.48498 * 109.47052 * 29.99867 * 3 2 1 6 6 H 1.48495 * 109.47406 * 150.00325 * 3 2 1 7 7 C 1.37876 * 119.99884 * 180.27523 * 2 1 3 8 8 H 1.08004 * 119.99987 * 350.14585 * 7 2 1 9 9 C 1.50702 * 120.00102 * 170.14934 * 7 2 1 10 10 H 1.08996 * 109.47017 * 359.44949 * 9 7 2 11 11 C 1.53005 * 109.46855 * 119.44900 * 9 7 2 12 12 C 1.53001 * 117.50080 * 4.33715 * 11 9 7 13 13 C 1.53004 * 117.49939 * 295.67341 * 11 9 7 14 14 C 1.53002 * 109.47023 * 239.44439 * 9 7 2 15 15 C 1.54268 * 110.02965 * 180.20293 * 14 9 7 16 16 C 1.54891 * 104.19395 * 217.10772 * 15 14 9 17 17 C 1.54884 * 102.74874 * 37.94667 * 16 15 14 18 18 C 1.53876 * 110.02885 * 63.04059 * 14 9 7 19 19 H 0.97000 * 119.99575 * 359.72540 * 1 2 3 20 20 H 1.09005 * 115.54588 * 150.01069 * 11 9 7 21 21 H 1.08991 * 117.49810 * 359.97438 * 12 11 9 22 22 H 1.08994 * 117.49841 * 145.02270 * 12 11 9 23 23 H 1.09000 * 117.49995 * 214.98112 * 13 11 9 24 24 H 1.08999 * 117.49309 * 359.97438 * 13 11 9 25 25 H 1.08995 * 110.02045 * 301.64818 * 14 9 7 26 26 H 1.09003 * 110.49122 * 335.78507 * 15 14 9 27 27 H 1.08995 * 110.48674 * 98.43083 * 15 14 9 28 28 H 1.08996 * 110.75634 * 279.62751 * 16 15 14 29 29 H 1.09006 * 110.91168 * 156.33128 * 16 15 14 30 30 H 1.09002 * 110.48848 * 203.37541 * 17 16 15 31 31 H 1.09003 * 110.60312 * 80.78675 * 17 16 15 32 32 H 1.09001 * 110.03180 * 238.56499 * 18 14 9 33 33 H 1.09001 * 110.03418 * 359.97438 * 18 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0057 8 1 1.4764 -2.1232 0.1499 9 6 3.4949 -1.2026 -0.2291 10 1 3.8462 -0.1813 -0.3756 11 6 4.1898 -1.8110 0.9908 12 6 3.3016 -2.3670 2.1057 13 6 4.0707 -1.0607 2.3189 14 6 3.8198 -2.0369 -1.4698 15 6 5.3439 -2.0585 -1.7076 16 6 5.4884 -2.0118 -3.2491 17 6 4.3524 -1.0468 -3.6698 18 6 3.1894 -1.3935 -2.7174 19 1 -0.4849 0.8401 0.0040 20 1 5.1269 -2.3295 0.7880 21 1 2.2223 -2.2991 1.9703 22 1 3.6545 -3.2511 2.6366 23 1 4.9292 -1.0860 2.9901 24 1 3.4976 -0.1335 2.3234 25 1 3.4462 -3.0531 -1.3445 26 1 5.8134 -1.1857 -1.2538 27 1 5.7788 -2.9761 -1.3114 28 1 5.3355 -3.0005 -3.6816 29 1 6.4610 -1.6122 -3.5367 30 1 4.0636 -1.2259 -4.7055 31 1 4.6600 -0.0099 -3.5344 32 1 2.5104 -2.0979 -3.1980 33 1 2.6515 -0.4873 -2.4388 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084330143.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:58 Heat of formation + Delta-G solvation = -16.615563 kcal Electronic energy + Delta-G solvation = -12814.646590 eV Core-core repulsion = 10839.314079 eV Total energy + Delta-G solvation = -1975.332511 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.82261 -37.49196 -34.52349 -31.86917 -29.47744 -27.69366 -24.83067 -23.12169 -21.62519 -20.80597 -19.89119 -18.86125 -16.75894 -16.24225 -16.14556 -15.53138 -15.01656 -14.30635 -14.05379 -13.85298 -13.55765 -12.85763 -12.44830 -12.25890 -11.92842 -11.79445 -11.74086 -11.64133 -11.47636 -11.37334 -11.17209 -10.94116 -10.68612 -10.50634 -10.20966 -8.23267 -6.18988 1.30072 1.33937 1.43203 2.36558 3.12365 3.23897 3.92389 3.98741 4.04333 4.26009 4.39891 4.45018 4.71048 4.73516 4.84429 4.86502 4.93777 4.96382 4.99852 5.09909 5.15174 5.23244 5.28939 5.37727 5.46692 5.51898 5.59296 5.64129 5.79090 5.86375 5.88445 6.43506 6.85572 7.42813 8.94193 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.028165 B = 0.017449 C = 0.013280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.912706 B = 1604.264644 C = 2107.876999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.017 3.983 3 Si 0.917 3.083 4 H -0.272 1.272 5 H -0.296 1.296 6 H -0.242 1.242 7 C -0.477 4.477 8 H 0.033 0.967 9 C 0.041 3.959 10 H 0.029 0.971 11 C -0.143 4.143 12 C -0.175 4.175 13 C -0.185 4.185 14 C -0.074 4.074 15 C -0.117 4.117 16 C -0.115 4.115 17 C -0.124 4.124 18 C -0.114 4.114 19 H 0.260 0.740 20 H 0.109 0.891 21 H 0.075 0.925 22 H 0.097 0.903 23 H 0.107 0.893 24 H 0.063 0.937 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.450 -2.284 -3.034 13.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.179 4.179 3 Si 0.743 3.257 4 H -0.198 1.198 5 H -0.223 1.223 6 H -0.166 1.166 7 C -0.515 4.515 8 H 0.051 0.949 9 C 0.022 3.978 10 H 0.047 0.953 11 C -0.161 4.161 12 C -0.212 4.212 13 C -0.222 4.222 14 C -0.093 4.093 15 C -0.155 4.155 16 C -0.152 4.152 17 C -0.162 4.162 18 C -0.152 4.152 19 H 0.069 0.931 20 H 0.127 0.873 21 H 0.093 0.907 22 H 0.116 0.884 23 H 0.125 0.875 24 H 0.081 0.919 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.294 -2.171 -3.033 12.847 hybrid contribution -0.730 0.941 0.210 1.209 sum 11.565 -1.230 -2.822 11.967 Atomic orbital electron populations 1.70070 1.08041 1.27322 1.53974 1.25734 0.95046 1.01900 0.95174 0.86206 0.80079 0.80434 0.78955 1.19769 1.22324 1.16605 1.21083 0.92230 0.92522 1.45637 0.94876 1.18932 0.92972 0.94674 0.91205 0.95269 1.22654 0.99756 1.03247 0.90466 1.22889 0.98694 0.96423 1.03161 1.22809 1.02775 0.95671 1.00939 1.21692 0.94798 0.98177 0.94598 1.22473 0.94936 1.01629 0.96434 1.22464 0.98187 0.99421 0.95174 1.22399 0.95603 0.99404 0.98761 1.22058 0.97583 0.99633 0.95943 0.93116 0.87303 0.90681 0.88436 0.87467 0.91856 0.93460 0.92048 0.90878 0.90958 0.90150 0.91015 0.92489 0.93631 0.94628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.76 13.96 21.45 0.30 -59.46 16 2 C 0.02 1.00 5.28 84.65 0.45 1.45 16 3 Si 0.92 44.79 26.24 68.60 1.80 46.59 16 4 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 5 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 6 H -0.24 -11.01 6.26 99.48 0.62 -10.39 16 7 C -0.48 -26.21 5.94 25.60 0.15 -26.06 16 8 H 0.03 2.05 7.40 -2.91 -0.02 2.03 16 9 C 0.04 1.84 1.30 -11.54 -0.01 1.82 16 10 H 0.03 1.36 4.77 -2.39 -0.01 1.35 16 11 C -0.14 -5.60 5.50 -10.79 -0.06 -5.66 16 12 C -0.17 -6.98 9.67 30.62 0.30 -6.68 16 13 C -0.19 -7.07 10.11 30.62 0.31 -6.76 16 14 C -0.07 -2.88 2.50 -10.07 -0.03 -2.91 16 15 C -0.12 -3.51 5.13 31.67 0.16 -3.35 16 16 C -0.12 -2.96 6.91 31.88 0.22 -2.74 16 17 C -0.12 -3.78 6.83 31.67 0.22 -3.57 16 18 C -0.11 -4.55 6.06 31.32 0.19 -4.36 16 19 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 20 H 0.11 3.62 7.04 -2.38 -0.02 3.61 16 21 H 0.07 3.62 6.08 -2.39 -0.01 3.60 16 22 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 23 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 24 H 0.06 2.74 7.13 -2.39 -0.02 2.72 16 25 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.06 1.85 7.84 -2.39 -0.02 1.83 16 27 H 0.07 1.92 8.04 -2.39 -0.02 1.91 16 28 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 29 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.03 1.65 6.81 -2.39 -0.02 1.63 16 Total: -1.00 -62.50 254.44 4.97 -57.53 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.98 Total: 14.15 kcal Atomic # 6 Polarization: -60.71 SS G_CDS: 1.89 Total: -58.81 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: 0.30 Total: -59.46 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.80 Total: 46.59 kcal Total: -62.50 4.97 -57.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084330143.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.918 kcal (2) G-P(sol) polarization free energy of solvation -62.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds