Wall clock time and date at job start Mon Mar 30 2020 02:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99995 * 2 1 4 4 H 1.48498 * 109.46902 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46669 * 299.99834 * 3 2 1 6 6 H 1.48502 * 109.47032 * 59.99757 * 3 2 1 7 7 C 1.37874 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00535 * 186.65564 * 7 2 1 9 9 C 1.50713 * 119.99777 * 6.66596 * 7 2 1 10 10 H 1.09002 * 109.46893 * 4.28412 * 9 7 2 11 11 C 1.53003 * 109.46652 * 244.28393 * 9 7 2 12 12 C 1.53001 * 117.49575 * 134.05091 * 11 9 7 13 13 C 1.52996 * 117.49834 * 65.38997 * 11 9 7 14 14 C 1.52995 * 109.46955 * 124.28478 * 9 7 2 15 15 C 1.54895 * 110.48475 * 183.23923 * 14 9 7 16 16 C 1.55228 * 102.58817 * 156.67674 * 15 14 9 17 17 C 1.54264 * 104.23512 * 322.08442 * 16 15 14 18 18 C 1.53876 * 106.59513 * 23.61042 * 17 16 15 19 19 H 0.97001 * 120.00085 * 359.97438 * 1 2 3 20 20 H 1.08994 * 115.55304 * 279.71814 * 11 9 7 21 21 H 1.09004 * 117.50146 * 359.97438 * 12 11 9 22 22 H 1.09000 * 117.49696 * 145.02252 * 12 11 9 23 23 H 1.09001 * 117.49808 * 214.97111 * 13 11 9 24 24 H 1.08999 * 117.50477 * 359.97438 * 13 11 9 25 25 H 1.08995 * 110.43899 * 60.70098 * 14 9 7 26 26 H 1.09004 * 110.75647 * 275.07055 * 15 14 9 27 27 H 1.09003 * 110.75153 * 38.43868 * 15 14 9 28 28 H 1.09011 * 110.46957 * 203.39816 * 16 15 14 29 29 H 1.08998 * 110.58567 * 80.83163 * 16 15 14 30 30 H 1.08999 * 110.03446 * 264.33290 * 17 16 15 31 31 H 1.08993 * 110.07561 * 142.91550 * 17 16 15 32 32 H 1.09000 * 110.03257 * 240.71212 * 18 17 16 33 33 H 1.09001 * 110.07131 * 119.30804 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0791 -1.1972 0.1089 9 6 1.2587 -2.4949 -0.1504 10 1 0.2020 -2.2899 -0.3227 11 6 1.4159 -3.3238 1.1259 12 6 0.1578 -3.9732 1.7059 13 6 0.7924 -2.7706 2.4089 14 6 1.8274 -3.2740 -1.3379 15 6 1.0242 -4.5788 -1.5649 16 6 1.2994 -4.8897 -3.0606 17 6 1.3035 -3.5054 -3.7412 18 6 1.6392 -2.4781 -2.6459 19 1 -0.4850 0.8400 0.0004 20 1 2.3533 -3.8723 1.2179 21 1 -0.7820 -3.8095 1.1785 22 1 0.2677 -4.9487 2.1798 23 1 1.3195 -2.9555 3.3449 24 1 0.2706 -1.8159 2.3439 25 1 2.8817 -3.4983 -1.1762 26 1 1.3985 -5.3789 -0.9261 27 1 -0.0394 -4.4123 -1.3941 28 1 0.5068 -5.5148 -3.4722 29 1 2.2677 -5.3759 -3.1791 30 1 0.3210 -3.2937 -4.1630 31 1 2.0603 -3.4761 -4.5251 32 1 0.8196 -1.7679 -2.5363 33 1 2.5591 -1.9502 -2.8974 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084330145.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:01 Heat of formation + Delta-G solvation = -19.764288 kcal Electronic energy + Delta-G solvation = -12685.026535 eV Core-core repulsion = 10709.557485 eV Total energy + Delta-G solvation = -1975.469050 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.55178 -37.33259 -34.61864 -31.54965 -29.34201 -27.51786 -24.84515 -22.94129 -21.41394 -20.71236 -20.30951 -18.39091 -16.53952 -16.46643 -16.17272 -15.11434 -14.79785 -14.48177 -14.01524 -13.36593 -13.12610 -12.91447 -12.49333 -12.17968 -12.10209 -11.87619 -11.71734 -11.69170 -11.55118 -11.26158 -11.06772 -10.81629 -10.63699 -10.35696 -10.11789 -8.04259 -6.08036 1.37204 1.40937 1.50389 2.45719 3.21387 3.38973 3.98243 4.04261 4.08373 4.27879 4.49253 4.51048 4.75261 4.78427 4.91094 4.92924 4.97249 5.01529 5.06767 5.16823 5.25075 5.31577 5.33512 5.55164 5.58036 5.59966 5.61267 5.69692 5.77756 6.05106 6.08712 6.51431 7.08517 7.54891 9.03860 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.028411 B = 0.015390 C = 0.011038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.288493 B = 1818.951421 C = 2536.081298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.021 3.979 3 Si 0.934 3.066 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.499 4.499 8 H 0.041 0.959 9 C 0.064 3.936 10 H 0.032 0.968 11 C -0.127 4.127 12 C -0.176 4.176 13 C -0.182 4.182 14 C -0.075 4.075 15 C -0.112 4.112 16 C -0.116 4.116 17 C -0.122 4.122 18 C -0.103 4.103 19 H 0.256 0.744 20 H 0.088 0.912 21 H 0.071 0.929 22 H 0.105 0.895 23 H 0.092 0.908 24 H 0.061 0.939 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.031 0.969 33 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.126 -8.133 -2.915 8.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.212 1.212 7 C -0.538 4.538 8 H 0.059 0.941 9 C 0.045 3.955 10 H 0.050 0.950 11 C -0.145 4.145 12 C -0.212 4.212 13 C -0.219 4.219 14 C -0.094 4.094 15 C -0.150 4.150 16 C -0.154 4.154 17 C -0.160 4.160 18 C -0.141 4.141 19 H 0.065 0.935 20 H 0.106 0.894 21 H 0.090 0.910 22 H 0.123 0.877 23 H 0.110 0.890 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.984 -7.999 -2.925 8.745 hybrid contribution 0.237 1.516 0.218 1.550 sum 2.221 -6.483 -2.707 7.368 Atomic orbital electron populations 1.70045 1.06969 1.26535 1.52968 1.25504 0.95355 1.01576 0.95233 0.85871 0.79485 0.81221 0.77305 1.19263 1.20950 1.21171 1.21285 0.92861 0.92005 1.47641 0.94097 1.18577 0.96704 0.91180 0.89033 0.94978 1.22472 0.95112 1.00934 0.96012 1.22927 0.97146 0.96559 1.04611 1.22629 1.05402 0.97199 0.96655 1.21971 0.97963 0.94297 0.95129 1.22543 0.99150 0.96927 0.96335 1.22391 1.01889 0.96212 0.94868 1.22165 1.01012 0.95224 0.97561 1.21904 0.99554 0.97457 0.95168 0.93467 0.89429 0.91009 0.87661 0.88987 0.91984 0.93176 0.91327 0.93400 0.90847 0.90861 0.92610 0.91149 0.95054 0.93846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.22 12.64 21.45 0.27 -53.95 16 2 C 0.02 1.17 5.45 84.65 0.46 1.63 16 3 Si 0.93 44.43 29.54 68.60 2.03 46.46 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 6 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 7 C -0.50 -27.14 7.48 25.60 0.19 -26.95 16 8 H 0.04 2.25 7.82 -2.91 -0.02 2.22 16 9 C 0.06 3.10 1.58 -11.54 -0.02 3.09 16 10 H 0.03 1.80 6.76 -2.39 -0.02 1.78 16 11 C -0.13 -5.43 4.51 -10.79 -0.05 -5.48 16 12 C -0.18 -6.63 10.18 30.62 0.31 -6.32 16 13 C -0.18 -7.75 10.01 30.62 0.31 -7.44 16 14 C -0.07 -3.10 2.40 -9.72 -0.02 -3.12 16 15 C -0.11 -3.82 5.80 32.01 0.19 -3.64 16 16 C -0.12 -3.29 6.84 31.79 0.22 -3.08 16 17 C -0.12 -3.88 6.80 31.32 0.21 -3.67 16 18 C -0.10 -4.25 5.76 31.32 0.18 -4.07 16 19 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 20 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 21 H 0.07 2.88 8.08 -2.39 -0.02 2.86 16 22 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 23 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 24 H 0.06 3.12 8.14 -2.39 -0.02 3.10 16 25 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 27 H 0.05 1.75 8.06 -2.39 -0.02 1.73 16 28 H 0.07 1.79 8.14 -2.38 -0.02 1.78 16 29 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.03 1.50 7.83 -2.39 -0.02 1.48 16 33 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -58.79 266.76 5.32 -53.47 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 1.04 Total: 13.07 kcal Atomic # 6 Polarization: -61.03 SS G_CDS: 1.98 Total: -59.05 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.27 Total: -53.95 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -58.79 5.32 -53.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084330145.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.706 kcal (2) G-P(sol) polarization free energy of solvation -58.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds