Wall clock time and date at job start Mon Mar 30 2020 02:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46883 * 2 1 4 4 C 1.50700 * 109.47275 * 120.00302 * 2 1 3 5 5 N 1.30320 * 125.97517 * 300.26692 * 4 2 1 6 6 N 1.39875 * 109.22800 * 180.18768 * 5 4 2 7 7 C 1.46507 * 125.67160 * 179.84395 * 6 5 4 8 8 C 1.34494 * 108.64996 * 359.57231 * 6 5 4 9 9 C 1.39274 * 107.18995 * 0.24995 * 8 6 5 10 10 C 1.41603 * 126.56148 * 180.02562 * 9 8 6 11 11 H 1.07999 * 120.00212 * 186.88041 * 10 9 8 12 12 C 1.39692 * 119.99576 * 6.87999 * 10 9 8 13 13 N 1.31028 * 120.00330 * 10.66176 * 12 10 9 14 14 Si 1.86797 * 119.99776 * 190.65883 * 12 10 9 15 15 H 1.48504 * 109.47300 * 94.06774 * 14 12 10 16 16 H 1.48503 * 109.47304 * 214.06860 * 14 12 10 17 17 H 1.48504 * 109.47111 * 334.06893 * 14 12 10 18 18 H 1.08997 * 109.47023 * 300.00023 * 1 2 3 19 19 H 1.08996 * 109.47293 * 59.99925 * 1 2 3 20 20 H 1.09004 * 109.47054 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.46830 * 240.00721 * 2 1 3 22 22 H 1.09003 * 109.46723 * 179.97438 * 3 2 1 23 23 H 1.08996 * 109.47218 * 300.00121 * 3 2 1 24 24 H 1.09000 * 109.46799 * 60.00702 * 3 2 1 25 25 H 1.08998 * 109.46913 * 269.68396 * 7 6 5 26 26 H 1.08995 * 109.47356 * 29.68894 * 7 6 5 27 27 H 1.08996 * 109.46962 * 149.68718 * 7 6 5 28 28 H 1.08000 * 126.40985 * 180.21701 * 8 6 5 29 29 H 0.96993 * 120.00331 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.7864 -0.3712 2.4644 6 7 2.4280 -1.2677 3.3253 7 6 2.3942 -1.2192 4.7892 8 6 3.0761 -2.1852 2.5856 9 6 2.8515 -1.8688 1.2480 10 6 3.3455 -2.5696 0.1211 11 1 3.1988 -2.1689 -0.8710 12 6 4.0227 -3.7793 0.2927 13 7 4.0214 -4.3708 1.4618 14 14 4.9301 -4.5537 -1.1448 15 1 6.3550 -4.1367 -1.1133 16 1 4.8449 -6.0330 -1.0450 17 1 4.3117 -4.1072 -2.4190 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 1.8933 -0.5137 -0.8901 22 1 3.1300 1.4425 0.0005 23 1 1.6766 1.9564 -0.8899 24 1 1.6767 1.9563 0.8901 25 1 3.2250 -0.6140 5.1519 26 1 1.4530 -0.7776 5.1164 27 1 2.4795 -2.2298 5.1882 28 1 3.6617 -3.0122 2.9590 29 1 4.4913 -5.2110 1.5809 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085017939.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:55 Heat of formation + Delta-G solvation = 34.507926 kcal Electronic energy + Delta-G solvation = -12184.635871 eV Core-core repulsion = 10107.979897 eV Total energy + Delta-G solvation = -2076.655974 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.20465 -36.38162 -35.33409 -32.72801 -30.52001 -28.01458 -27.87985 -25.94865 -22.93333 -21.59993 -19.36148 -18.72101 -17.26454 -16.07033 -15.80270 -15.32611 -15.11188 -14.42857 -14.10882 -13.64581 -13.48017 -13.15136 -13.05825 -12.91891 -12.70099 -12.32091 -12.04306 -11.91887 -11.72331 -11.42722 -11.10204 -10.65723 -9.50897 -9.02127 -8.34558 -5.94966 1.38464 1.44802 1.57142 1.58974 2.25173 2.35528 2.41443 3.55506 4.02444 4.16269 4.31893 4.47805 4.55264 4.69144 4.76653 4.90133 4.90827 5.05467 5.08602 5.17160 5.38008 5.42378 5.51346 5.75519 5.89002 6.08885 6.52676 6.95233 7.15947 7.21011 7.55250 8.70137 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.030106 B = 0.014380 C = 0.010477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.821450 B = 1946.700525 C = 2671.951647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.007 4.007 3 C -0.126 4.126 4 C 0.012 3.988 5 N -0.337 5.337 6 N -0.402 5.402 7 C 0.112 3.888 8 C -0.067 4.067 9 C -0.080 4.080 10 C -0.459 4.459 11 H 0.069 0.931 12 C 0.013 3.987 13 N -0.871 5.871 14 Si 0.980 3.020 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.261 1.261 18 H 0.049 0.951 19 H 0.083 0.917 20 H 0.035 0.965 21 H 0.073 0.927 22 H 0.038 0.962 23 H 0.083 0.917 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.172 0.828 29 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.092 4.639 -0.221 5.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.028 4.028 3 C -0.183 4.183 4 C -0.154 4.154 5 N -0.161 5.161 6 N -0.190 5.190 7 C -0.029 4.029 8 C -0.210 4.210 9 C -0.089 4.089 10 C -0.494 4.494 11 H 0.087 0.913 12 C -0.193 4.193 13 N -0.504 5.504 14 Si 0.803 3.197 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.185 1.185 18 H 0.068 0.932 19 H 0.102 0.898 20 H 0.054 0.946 21 H 0.091 0.909 22 H 0.057 0.943 23 H 0.101 0.899 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.188 0.812 29 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.583 5.233 0.785 5.888 hybrid contribution 1.027 -1.361 -0.637 1.820 sum -1.555 3.872 0.149 4.176 Atomic orbital electron populations 1.21674 0.93591 1.00881 1.02199 1.19462 0.96111 0.95349 0.91857 1.21680 1.00079 0.94378 1.02202 1.22692 1.01153 0.98119 0.93432 1.76169 1.22024 1.16951 1.00952 1.47987 1.41844 1.22909 1.06294 1.21723 1.03351 1.03554 0.74301 1.23413 1.06626 0.99021 0.91918 1.18461 1.00856 0.96153 0.93478 1.18983 1.32724 1.04643 0.93005 0.91273 1.26399 0.96697 0.96868 0.99354 1.69691 1.38523 1.16635 1.25584 0.85197 0.78605 0.77168 0.78682 1.19674 1.20186 1.18504 0.93178 0.89844 0.94558 0.90874 0.94304 0.89861 0.93201 0.91205 0.89536 0.89464 0.81175 0.91563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 9.18 71.98 0.66 -3.67 15 2 C -0.01 -0.29 3.30 -11.54 -0.04 -0.33 15 3 C -0.13 -4.26 9.18 71.98 0.66 -3.60 15 4 C 0.01 0.62 5.79 43.69 0.25 0.87 15 5 N -0.34 -16.67 12.47 -46.36 -0.58 -17.25 15 6 N -0.40 -19.38 3.98 -366.49 -1.46 -20.84 15 7 C 0.11 3.84 11.44 127.77 1.46 5.30 15 8 C -0.07 -3.69 10.42 84.53 0.88 -2.81 15 9 C -0.08 -4.54 5.90 -21.30 -0.13 -4.66 15 10 C -0.46 -26.00 9.12 23.45 0.21 -25.78 15 11 H 0.07 3.76 6.95 -2.91 -0.02 3.74 15 12 C 0.01 0.68 5.45 85.16 0.46 1.15 15 13 N -0.87 -48.04 10.57 21.79 0.23 -47.81 15 14 Si 0.98 41.40 29.57 68.60 2.03 43.43 15 15 H -0.27 -11.16 7.11 99.48 0.71 -10.46 15 16 H -0.28 -11.27 7.11 99.48 0.71 -10.56 15 17 H -0.26 -10.64 7.11 99.48 0.71 -9.94 15 18 H 0.05 1.73 8.14 -2.39 -0.02 1.71 15 19 H 0.08 2.24 8.14 -2.39 -0.02 2.22 15 20 H 0.04 1.33 8.14 -2.39 -0.02 1.32 15 21 H 0.07 3.04 6.95 -2.39 -0.02 3.02 15 22 H 0.04 1.39 8.14 -2.39 -0.02 1.37 15 23 H 0.08 2.20 8.14 -2.39 -0.02 2.18 15 24 H 0.05 1.70 8.14 -2.39 -0.02 1.68 15 25 H 0.07 2.12 8.14 -2.39 -0.02 2.10 15 26 H 0.09 2.62 8.14 -2.39 -0.02 2.60 15 27 H 0.09 2.68 8.14 -2.39 -0.02 2.66 15 28 H 0.17 9.61 6.02 -2.91 -0.02 9.59 15 29 H 0.27 13.91 8.30 -92.71 -0.77 13.14 15 Total: -1.00 -65.39 249.18 5.77 -59.61 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 1.12 Total: 16.37 kcal Atomic # 6 Polarization: -37.96 SS G_CDS: 4.43 Total: -33.53 kcal Atomic # 7 Polarization: -84.08 SS G_CDS: -1.81 Total: -85.89 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -65.39 5.77 -59.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085017939.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.123 kcal (2) G-P(sol) polarization free energy of solvation -65.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds