Wall clock time and date at job start Mon Mar 30 2020 02:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47259 * 2 1 4 4 N 1.46905 * 109.47309 * 240.00011 * 2 1 3 5 5 C 1.53002 * 109.47404 * 119.99978 * 2 1 3 6 6 C 1.50691 * 109.47471 * 185.00007 * 5 2 1 7 7 C 1.34805 * 125.90829 * 85.17182 * 6 5 2 8 8 C 1.41181 * 107.50850 * 180.22130 * 7 6 5 9 9 C 1.34800 * 107.50495 * 359.76876 * 8 7 6 10 10 N 1.36845 * 108.18766 * 0.02562 * 9 8 7 11 11 C 1.37500 * 125.69393 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00243 * 157.25887 * 11 10 9 13 13 C 1.38917 * 120.00051 * 337.26481 * 11 10 9 14 14 N 1.31362 * 120.00080 * 336.71199 * 13 11 10 15 15 Si 1.86796 * 120.00320 * 156.71331 * 13 11 10 16 16 H 1.48501 * 109.47464 * 179.97438 * 15 13 11 17 17 H 1.48505 * 109.47371 * 300.00169 * 15 13 11 18 18 H 1.48507 * 109.47192 * 59.99927 * 15 13 11 19 19 H 1.08994 * 109.47162 * 300.00140 * 1 2 3 20 20 H 1.09000 * 109.46914 * 60.00191 * 1 2 3 21 21 H 1.08996 * 109.46834 * 180.02562 * 1 2 3 22 22 H 1.00900 * 110.99953 * 176.04692 * 4 2 1 23 23 H 1.00900 * 110.99427 * 300.00101 * 4 2 1 24 24 H 1.09003 * 109.47047 * 64.99607 * 5 2 1 25 25 H 1.09006 * 109.46752 * 305.00434 * 5 2 1 26 26 H 1.07997 * 126.24947 * 359.97438 * 7 6 5 27 27 H 1.07995 * 126.24436 * 179.75018 * 8 7 6 28 28 H 1.08006 * 125.90842 * 179.97438 * 9 8 7 29 29 H 0.96998 * 119.99760 * 354.23472 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0401 -0.7212 1.2492 6 6 3.5419 -0.6149 1.3127 7 6 4.2403 0.4119 1.8371 8 6 5.6120 0.1125 1.6885 9 6 5.7015 -1.0887 1.0834 10 7 4.4326 -1.5453 0.8505 11 6 4.1070 -2.7378 0.2484 12 1 3.1404 -3.1859 0.4254 13 6 5.0214 -3.3662 -0.5876 14 7 5.9684 -2.6662 -1.1696 15 14 4.9043 -5.2068 -0.8842 16 1 5.9876 -5.6293 -1.8078 17 1 5.0454 -5.9263 0.4072 18 1 3.5862 -5.5280 -1.4883 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 3.0262 -0.6501 -1.2559 23 1 1.6961 -1.6479 -1.2227 24 1 1.7517 -1.7715 1.2056 25 1 1.6053 -0.2617 2.1370 26 1 3.8263 1.3031 2.2852 27 1 6.4386 0.7327 2.0021 28 1 6.6164 -1.6017 0.8259 29 1 5.9798 -1.7001 -1.0834 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085586883.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:58 Heat of formation + Delta-G solvation = 25.342161 kcal Electronic energy + Delta-G solvation = -12443.250283 eV Core-core repulsion = 10366.196852 eV Total energy + Delta-G solvation = -2077.053431 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.98637 -35.86982 -33.65929 -29.96294 -29.34699 -28.28410 -24.79080 -24.41445 -20.37774 -19.66018 -18.98510 -17.31035 -15.63869 -15.05951 -14.13956 -13.87828 -13.83984 -13.31770 -12.62682 -12.42462 -12.09925 -11.70984 -11.41714 -11.07520 -10.93686 -10.81224 -10.67615 -10.39832 -10.30455 -10.01496 -9.13507 -8.09848 -7.77251 -7.11737 -6.62357 -4.39012 3.06760 3.16225 3.35141 3.67650 3.98670 4.19684 4.77636 4.98375 5.27736 5.52864 5.63287 5.92682 6.03101 6.20785 6.24903 6.43438 6.54817 6.57715 6.63973 6.68899 7.00887 7.32489 7.56699 7.67547 7.87399 7.89484 8.17589 8.38728 8.42394 9.07837 9.45837 10.24197 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.031745 B = 0.015343 C = 0.011539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.827318 B = 1824.448668 C = 2425.909429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.093 3.907 3 H 0.073 0.927 4 N -0.839 5.839 5 C -0.064 4.064 6 C -0.049 4.049 7 C -0.231 4.231 8 C -0.241 4.241 9 C -0.057 4.057 10 N -0.245 5.245 11 C -0.438 4.438 12 H 0.095 0.905 13 C 0.027 3.973 14 N -0.842 5.842 15 Si 1.077 2.923 16 H -0.274 1.274 17 H -0.280 1.280 18 H -0.278 1.278 19 H 0.053 0.947 20 H 0.057 0.943 21 H 0.049 0.951 22 H 0.351 0.649 23 H 0.334 0.666 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.107 0.893 27 H 0.109 0.891 28 H 0.143 0.857 29 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.861 0.521 1.535 6.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.020 4.020 3 H 0.092 0.908 4 N -0.368 5.368 5 C -0.104 4.104 6 C -0.166 4.166 7 C -0.256 4.256 8 C -0.266 4.266 9 C -0.194 4.194 10 N 0.097 4.903 11 C -0.565 4.565 12 H 0.113 0.887 13 C -0.187 4.187 14 N -0.470 5.470 15 Si 0.901 3.099 16 H -0.199 1.199 17 H -0.206 1.206 18 H -0.204 1.204 19 H 0.072 0.928 20 H 0.076 0.924 21 H 0.068 0.932 22 H 0.165 0.835 23 H 0.145 0.855 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.125 0.875 27 H 0.127 0.873 28 H 0.161 0.839 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.588 -0.510 0.161 5.614 hybrid contribution -0.093 0.702 1.581 1.732 sum -5.682 0.192 1.742 5.946 Atomic orbital electron populations 1.21797 0.95559 1.01376 1.01168 1.21402 0.93824 0.98256 0.88503 0.90845 1.59128 1.17829 1.20681 1.39170 1.20643 0.90525 1.00471 0.98732 1.19907 0.91076 0.92645 1.13019 1.20113 0.93373 0.99637 1.12468 1.20359 0.95616 0.98732 1.11884 1.21505 0.88416 0.98439 1.11070 1.40294 1.04045 1.11777 1.34209 1.20594 1.06461 0.98411 1.31053 0.88699 1.26615 0.92432 1.07799 0.91875 1.70641 1.31778 1.10767 1.33803 0.83396 0.77115 0.72163 0.77198 1.19889 1.20571 1.20422 0.92823 0.92421 0.93207 0.83515 0.85489 0.92294 0.91892 0.87453 0.87254 0.83932 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.49 37.16 0.35 -1.71 15 2 C 0.09 1.67 3.40 -67.71 -0.23 1.44 15 3 H 0.07 1.38 8.14 -51.93 -0.42 0.96 15 4 N -0.84 -16.50 9.20 -4.66 -0.04 -16.54 15 5 C -0.06 -1.25 5.12 -27.89 -0.14 -1.40 15 6 C -0.05 -1.17 5.32 -81.57 -0.43 -1.60 15 7 C -0.23 -5.40 10.77 -39.68 -0.43 -5.83 15 8 C -0.24 -5.82 10.86 -39.68 -0.43 -6.26 15 9 C -0.06 -1.49 9.11 -16.53 -0.15 -1.64 15 10 N -0.25 -6.28 2.65 -57.81 -0.15 -6.43 15 11 C -0.44 -11.16 9.12 -14.76 -0.13 -11.30 15 12 H 0.10 2.36 7.09 -52.49 -0.37 1.99 15 13 C 0.03 0.67 5.18 -17.50 -0.09 0.58 15 14 N -0.84 -22.61 12.59 55.49 0.70 -21.91 15 15 Si 1.08 21.95 29.98 -169.99 -5.10 16.86 15 16 H -0.27 -5.64 7.11 56.52 0.40 -5.24 15 17 H -0.28 -5.57 7.11 56.52 0.40 -5.17 15 18 H -0.28 -5.34 7.11 56.52 0.40 -4.94 15 19 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 20 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 21 H 0.05 0.70 8.14 -51.93 -0.42 0.28 15 22 H 0.35 7.98 7.69 -39.29 -0.30 7.68 15 23 H 0.33 6.45 9.00 -39.29 -0.35 6.10 15 24 H 0.06 1.19 7.14 -51.93 -0.37 0.82 15 25 H 0.06 1.12 8.14 -51.93 -0.42 0.70 15 26 H 0.11 2.25 8.06 -52.49 -0.42 1.83 15 27 H 0.11 2.37 8.06 -52.49 -0.42 1.94 15 28 H 0.14 3.74 6.96 -52.48 -0.37 3.38 15 29 H 0.29 8.08 6.52 -40.82 -0.27 7.81 15 LS Contribution 245.33 15.07 3.70 3.70 Total: -1.00 -26.88 245.33 -6.37 -33.25 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -3.78 Total: 18.78 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: -1.69 Total: -27.70 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: 0.50 Total: -44.89 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.10 Total: 16.86 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -26.88 -6.37 -33.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085586883.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.594 kcal (2) G-P(sol) polarization free energy of solvation -26.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds