Wall clock time and date at job start Mon Mar 30 2020 02:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47259 * 2 1 4 4 N 1.46905 * 109.47309 * 240.00011 * 2 1 3 5 5 C 1.53002 * 109.47404 * 119.99978 * 2 1 3 6 6 C 1.50691 * 109.47471 * 185.00007 * 5 2 1 7 7 C 1.34805 * 125.90829 * 85.17182 * 6 5 2 8 8 C 1.41181 * 107.50850 * 180.22130 * 7 6 5 9 9 C 1.34800 * 107.50495 * 359.76876 * 8 7 6 10 10 N 1.36845 * 108.18766 * 0.02562 * 9 8 7 11 11 C 1.37500 * 125.69393 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00243 * 157.25887 * 11 10 9 13 13 C 1.38917 * 120.00051 * 337.26481 * 11 10 9 14 14 N 1.31362 * 120.00080 * 336.71199 * 13 11 10 15 15 Si 1.86796 * 120.00320 * 156.71331 * 13 11 10 16 16 H 1.48501 * 109.47464 * 179.97438 * 15 13 11 17 17 H 1.48505 * 109.47371 * 300.00169 * 15 13 11 18 18 H 1.48507 * 109.47192 * 59.99927 * 15 13 11 19 19 H 1.08994 * 109.47162 * 300.00140 * 1 2 3 20 20 H 1.09000 * 109.46914 * 60.00191 * 1 2 3 21 21 H 1.08996 * 109.46834 * 180.02562 * 1 2 3 22 22 H 1.00900 * 110.99953 * 176.04692 * 4 2 1 23 23 H 1.00900 * 110.99427 * 300.00101 * 4 2 1 24 24 H 1.09003 * 109.47047 * 64.99607 * 5 2 1 25 25 H 1.09006 * 109.46752 * 305.00434 * 5 2 1 26 26 H 1.07997 * 126.24947 * 359.97438 * 7 6 5 27 27 H 1.07995 * 126.24436 * 179.75018 * 8 7 6 28 28 H 1.08006 * 125.90842 * 179.97438 * 9 8 7 29 29 H 0.96998 * 119.99760 * 354.23472 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0401 -0.7212 1.2492 6 6 3.5419 -0.6149 1.3127 7 6 4.2403 0.4119 1.8371 8 6 5.6120 0.1125 1.6885 9 6 5.7015 -1.0887 1.0834 10 7 4.4326 -1.5453 0.8505 11 6 4.1070 -2.7378 0.2484 12 1 3.1404 -3.1859 0.4254 13 6 5.0214 -3.3662 -0.5876 14 7 5.9684 -2.6662 -1.1696 15 14 4.9043 -5.2068 -0.8842 16 1 5.9876 -5.6293 -1.8078 17 1 5.0454 -5.9263 0.4072 18 1 3.5862 -5.5280 -1.4883 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 3.0262 -0.6501 -1.2559 23 1 1.6961 -1.6479 -1.2227 24 1 1.7517 -1.7715 1.2056 25 1 1.6053 -0.2617 2.1370 26 1 3.8263 1.3031 2.2852 27 1 6.4386 0.7327 2.0021 28 1 6.6164 -1.6017 0.8259 29 1 5.9798 -1.7001 -1.0834 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085586883.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:58 Heat of formation + Delta-G solvation = 9.205146 kcal Electronic energy + Delta-G solvation = -12443.950036 eV Core-core repulsion = 10366.196852 eV Total energy + Delta-G solvation = -2077.753185 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.86121 -37.37405 -35.57809 -31.87822 -31.05407 -29.67313 -26.60507 -26.23381 -21.86821 -21.57845 -20.83835 -19.15837 -17.38943 -16.70771 -15.83656 -15.53682 -15.41521 -15.04156 -14.40861 -14.10370 -13.74000 -13.30880 -12.81137 -12.69919 -12.65406 -12.49509 -12.17241 -12.06681 -11.97005 -11.64379 -10.99906 -9.75488 -9.65315 -9.08948 -8.51791 -6.38823 1.38145 1.50551 1.76345 1.87904 2.27992 2.31741 2.88524 3.13469 3.78192 4.06635 4.21341 4.45099 4.62400 4.68416 4.69353 4.74739 4.93644 5.00812 5.11169 5.25838 5.33484 5.38991 5.68392 5.74777 5.85264 6.28839 6.45135 6.53430 6.56770 7.15343 7.52972 8.23238 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.031745 B = 0.015343 C = 0.011539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.827318 B = 1824.448668 C = 2425.909429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.094 3.906 3 H 0.066 0.934 4 N -0.838 5.838 5 C -0.060 4.060 6 C -0.053 4.053 7 C -0.241 4.241 8 C -0.244 4.244 9 C -0.087 4.087 10 N -0.261 5.261 11 C -0.448 4.448 12 H 0.099 0.901 13 C -0.011 4.011 14 N -0.866 5.866 15 Si 1.127 2.873 16 H -0.279 1.279 17 H -0.271 1.271 18 H -0.255 1.255 19 H 0.076 0.924 20 H 0.063 0.937 21 H 0.054 0.946 22 H 0.331 0.669 23 H 0.335 0.665 24 H 0.052 0.948 25 H 0.086 0.914 26 H 0.134 0.866 27 H 0.129 0.871 28 H 0.127 0.873 29 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.580 0.381 2.025 7.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.018 4.018 3 H 0.084 0.916 4 N -0.365 5.365 5 C -0.100 4.100 6 C -0.170 4.170 7 C -0.266 4.266 8 C -0.269 4.269 9 C -0.223 4.223 10 N 0.080 4.920 11 C -0.575 4.575 12 H 0.117 0.883 13 C -0.219 4.219 14 N -0.495 5.495 15 Si 0.944 3.056 16 H -0.204 1.204 17 H -0.196 1.196 18 H -0.180 1.180 19 H 0.095 0.905 20 H 0.082 0.918 21 H 0.073 0.927 22 H 0.142 0.858 23 H 0.146 0.854 24 H 0.071 0.929 25 H 0.105 0.895 26 H 0.151 0.849 27 H 0.147 0.853 28 H 0.145 0.855 29 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.334 -0.632 0.664 7.391 hybrid contribution 0.428 0.843 1.481 1.757 sum -6.906 0.211 2.145 7.235 Atomic orbital electron populations 1.21729 0.92410 1.02213 1.02624 1.21477 0.96196 0.97199 0.86938 0.91599 1.59171 1.16152 1.20895 1.40261 1.20749 0.87990 1.00606 1.00626 1.20654 0.92902 0.92034 1.11425 1.20499 0.93029 1.00571 1.12471 1.20700 0.96953 0.98226 1.11039 1.21542 0.88498 0.99534 1.12723 1.40487 1.04266 1.12397 1.34858 1.20800 1.06829 0.98715 1.31109 0.88331 1.28049 0.91595 1.11181 0.91049 1.70750 1.33292 1.09833 1.35637 0.82796 0.77961 0.67386 0.77418 1.20435 1.19632 1.17962 0.90546 0.91839 0.92673 0.85796 0.85383 0.92901 0.89522 0.84856 0.85264 0.85504 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 9.49 71.98 0.68 -2.73 15 2 C 0.09 3.20 3.40 44.91 0.15 3.35 15 3 H 0.07 2.35 8.14 -2.39 -0.02 2.33 15 4 N -0.84 -32.20 9.20 -168.67 -1.55 -33.75 15 5 C -0.06 -2.23 5.12 29.85 0.15 -2.07 15 6 C -0.05 -2.44 5.32 40.99 0.22 -2.22 15 7 C -0.24 -10.94 10.77 22.20 0.24 -10.71 15 8 C -0.24 -11.71 10.86 22.20 0.24 -11.47 15 9 C -0.09 -4.58 9.11 83.12 0.76 -3.82 15 10 N -0.26 -13.45 2.65 -336.82 -0.89 -14.34 15 11 C -0.45 -22.84 9.12 83.97 0.77 -22.08 15 12 H 0.10 4.85 7.09 -2.91 -0.02 4.82 15 13 C -0.01 -0.55 5.18 84.93 0.44 -0.10 15 14 N -0.87 -47.60 12.59 21.65 0.27 -47.33 15 15 Si 1.13 43.68 29.98 68.60 2.06 45.74 15 16 H -0.28 -11.00 7.11 99.48 0.71 -10.29 15 17 H -0.27 -10.07 7.11 99.48 0.71 -9.36 15 18 H -0.26 -8.91 7.11 99.48 0.71 -8.20 15 19 H 0.08 1.65 8.14 -2.39 -0.02 1.63 15 20 H 0.06 1.58 8.14 -2.39 -0.02 1.56 15 21 H 0.05 1.37 8.14 -2.39 -0.02 1.35 15 22 H 0.33 15.11 7.69 -89.69 -0.69 14.42 15 23 H 0.33 12.60 9.00 -89.69 -0.81 11.80 15 24 H 0.05 2.03 7.14 -2.39 -0.02 2.01 15 25 H 0.09 2.80 8.14 -2.38 -0.02 2.78 15 26 H 0.13 5.25 8.06 -2.91 -0.02 5.22 15 27 H 0.13 5.49 8.06 -2.91 -0.02 5.47 15 28 H 0.13 6.94 6.96 -2.91 -0.02 6.92 15 29 H 0.28 15.84 6.52 -92.71 -0.60 15.24 15 Total: -1.00 -57.17 245.33 3.35 -53.82 By element: Atomic # 1 Polarization: 47.89 SS G_CDS: -0.18 Total: 47.71 kcal Atomic # 6 Polarization: -55.50 SS G_CDS: 3.65 Total: -51.85 kcal Atomic # 7 Polarization: -93.24 SS G_CDS: -2.17 Total: -95.42 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.06 Total: 45.74 kcal Total: -57.17 3.35 -53.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085586883.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.026 kcal (2) G-P(sol) polarization free energy of solvation -57.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds