Wall clock time and date at job start Mon Mar 30 2020 02:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47035 * 2 1 4 4 N 1.46901 * 109.47000 * 239.99870 * 2 1 3 5 5 C 1.53003 * 109.47152 * 119.99844 * 2 1 3 6 6 C 1.50694 * 109.47139 * 185.00114 * 5 2 1 7 7 C 1.41171 * 126.24565 * 269.97325 * 6 5 2 8 8 C 1.34804 * 107.51051 * 180.02562 * 7 6 5 9 9 N 1.36852 * 108.18106 * 0.02562 * 8 7 6 10 10 C 1.37494 * 125.69089 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00457 * 160.64144 * 10 9 8 12 12 C 1.38923 * 120.00144 * 340.63685 * 10 9 8 13 13 N 1.31360 * 120.00254 * 349.71408 * 12 10 9 14 14 Si 1.86803 * 120.00155 * 169.71028 * 12 10 9 15 15 H 1.48499 * 109.46873 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47192 * 120.00132 * 14 12 10 17 17 H 1.48500 * 109.47138 * 240.00091 * 14 12 10 18 18 C 1.34800 * 126.24855 * 90.00436 * 6 5 2 19 19 H 1.09002 * 109.46830 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47217 * 299.99838 * 1 2 3 21 21 H 1.09001 * 109.47238 * 59.99886 * 1 2 3 22 22 H 1.00902 * 110.99784 * 296.04465 * 4 2 1 23 23 H 1.00893 * 110.99758 * 60.00017 * 4 2 1 24 24 H 1.09002 * 109.46712 * 64.99878 * 5 2 1 25 25 H 1.08998 * 109.47369 * 305.00565 * 5 2 1 26 26 H 1.07996 * 126.24690 * 0.02985 * 7 6 5 27 27 H 1.08003 * 125.91215 * 180.02562 * 8 7 6 28 28 H 0.96998 * 120.00212 * 179.97438 * 13 12 10 29 29 H 1.08000 * 125.90706 * 359.70970 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0400 -0.7212 1.2493 6 6 3.5419 -0.6149 1.3128 7 6 4.4673 -1.5219 0.7527 8 6 5.7040 -1.0648 1.0333 9 7 5.5783 0.0949 1.7490 10 6 6.6167 0.8627 2.2210 11 1 6.4456 1.8938 2.4932 12 6 7.8859 0.3123 2.3480 13 7 8.0565 -0.9832 2.2132 14 14 9.3500 1.4144 2.7102 15 1 8.8944 2.8238 2.8158 16 1 9.9767 0.9999 3.9911 17 1 10.3427 1.2955 1.6122 18 6 4.2469 0.3635 1.9152 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 1.7502 -1.6649 -1.1908 23 1 1.6961 -0.2350 -2.0385 24 1 1.7516 -1.7715 1.2056 25 1 1.6054 -0.2618 2.1370 26 1 4.2282 -2.4185 0.2001 27 1 6.6333 -1.5327 0.7435 28 1 8.9427 -1.3675 2.3014 29 1 3.8326 1.2144 2.4355 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085587411.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:03 Heat of formation + Delta-G solvation = 33.697207 kcal Electronic energy + Delta-G solvation = -11920.096563 eV Core-core repulsion = 9843.405434 eV Total energy + Delta-G solvation = -2076.691129 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.37664 -36.15963 -33.27666 -30.43257 -28.81934 -27.74071 -25.73056 -23.79435 -20.41492 -19.38305 -17.88627 -17.36087 -15.52885 -15.25148 -14.38431 -14.07733 -13.28116 -12.81685 -12.53849 -12.32832 -11.97409 -11.73648 -11.58174 -11.28870 -11.06606 -10.74657 -10.47962 -10.39532 -10.06898 -9.87083 -9.06574 -8.11545 -7.23793 -6.57140 -6.24521 -4.16208 3.03207 3.12351 3.17531 3.94886 4.05117 4.58856 5.01946 5.17593 5.38455 5.45420 5.55708 5.68613 6.01247 6.17255 6.24059 6.44949 6.74712 6.75615 6.84776 7.21870 7.25158 7.47101 7.69425 7.87943 7.92778 7.99232 8.21952 8.74033 8.87489 9.43346 9.86728 10.49307 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.080206 B = 0.008244 C = 0.007938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.016192 B = 3395.564272 C = 3526.637850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.094 3.906 3 H 0.075 0.925 4 N -0.827 5.827 5 C -0.023 4.023 6 C -0.186 4.186 7 C -0.234 4.234 8 C -0.005 4.005 9 N -0.260 5.260 10 C -0.345 4.345 11 H 0.101 0.899 12 C 0.043 3.957 13 N -0.848 5.848 14 Si 0.935 3.065 15 H -0.266 1.266 16 H -0.277 1.277 17 H -0.275 1.275 18 C -0.085 4.085 19 H 0.049 0.951 20 H 0.056 0.944 21 H 0.046 0.954 22 H 0.333 0.667 23 H 0.327 0.673 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.102 0.898 27 H 0.156 0.844 28 H 0.274 0.726 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.815 1.295 -2.872 8.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.018 4.018 3 H 0.093 0.907 4 N -0.355 5.355 5 C -0.061 4.061 6 C -0.194 4.194 7 C -0.258 4.258 8 C -0.142 4.142 9 N 0.082 4.918 10 C -0.473 4.473 11 H 0.119 0.881 12 C -0.165 4.165 13 N -0.480 5.480 14 Si 0.760 3.240 15 H -0.190 1.190 16 H -0.203 1.203 17 H -0.201 1.201 18 C -0.219 4.219 19 H 0.068 0.932 20 H 0.075 0.925 21 H 0.065 0.935 22 H 0.145 0.855 23 H 0.139 0.861 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.120 0.880 27 H 0.173 0.827 28 H 0.085 0.915 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.588 1.553 -2.437 7.194 hybrid contribution -0.323 0.285 0.005 0.431 sum -6.912 1.838 -2.431 7.554 Atomic orbital electron populations 1.22731 0.99328 1.01249 1.01410 1.21501 0.89792 0.98905 0.91601 0.90657 1.58715 1.67610 1.05838 1.03310 1.19733 0.93308 0.98432 0.94660 1.18574 0.92375 0.99073 1.09367 1.20158 0.92267 1.02151 1.11205 1.21894 0.98265 0.91799 1.02282 1.40167 1.03616 1.16297 1.31719 1.19911 0.87380 0.95523 1.44533 0.88120 1.25470 0.99598 0.96008 0.95463 1.69958 1.23907 1.10215 1.43886 0.85755 0.80164 0.79841 0.78251 1.18980 1.20267 1.20063 1.21093 0.83908 1.03542 1.13407 0.93171 0.92474 0.93497 0.85505 0.86109 0.93194 0.92953 0.87999 0.82665 0.91528 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.31 9.48 37.16 0.35 -1.96 15 2 C 0.09 1.48 3.36 -67.71 -0.23 1.26 15 3 H 0.08 1.31 8.14 -51.93 -0.42 0.89 15 4 N -0.83 -12.84 8.94 -4.66 -0.04 -12.89 15 5 C -0.02 -0.42 5.33 -27.88 -0.15 -0.57 15 6 C -0.19 -4.39 5.13 -104.73 -0.54 -4.93 15 7 C -0.23 -5.92 10.79 -39.69 -0.43 -6.35 15 8 C 0.00 -0.14 10.05 -16.53 -0.17 -0.30 15 9 N -0.26 -7.34 2.91 -62.01 -0.18 -7.52 15 10 C -0.35 -9.66 10.08 -14.76 -0.15 -9.81 15 11 H 0.10 2.66 7.85 -52.49 -0.41 2.25 15 12 C 0.04 1.14 5.37 -17.50 -0.09 1.05 15 13 N -0.85 -23.52 10.82 55.49 0.60 -22.92 15 14 Si 0.93 20.07 29.56 -169.99 -5.03 15.04 15 15 H -0.27 -5.55 7.11 56.52 0.40 -5.14 15 16 H -0.28 -5.86 7.11 56.52 0.40 -5.46 15 17 H -0.28 -5.83 7.11 56.52 0.40 -5.42 15 18 C -0.08 -2.16 11.28 -16.54 -0.19 -2.35 15 19 H 0.05 0.58 8.14 -51.93 -0.42 0.16 15 20 H 0.06 0.67 8.14 -51.93 -0.42 0.25 15 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 15 22 H 0.33 4.73 8.98 -39.29 -0.35 4.38 15 23 H 0.33 4.31 9.04 -39.30 -0.36 3.95 15 24 H 0.05 0.88 8.14 -51.93 -0.42 0.45 15 25 H 0.05 0.90 8.14 -51.93 -0.42 0.48 15 26 H 0.10 2.39 8.06 -52.49 -0.42 1.97 15 27 H 0.16 4.47 6.34 -52.48 -0.33 4.14 15 28 H 0.27 6.99 8.31 -40.82 -0.34 6.66 15 29 H 0.13 2.92 8.06 -52.49 -0.42 2.49 15 LS Contribution 249.90 15.07 3.77 3.77 Total: -1.00 -29.90 249.90 -6.43 -36.34 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -3.97 Total: 12.14 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -1.58 Total: -23.97 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.38 Total: -43.32 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.03 Total: 15.04 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -29.90 -6.43 -36.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085587411.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.035 kcal (2) G-P(sol) polarization free energy of solvation -29.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds