Wall clock time and date at job start Mon Mar 30 2020 02:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47035 * 2 1 4 4 N 1.46901 * 109.47000 * 239.99870 * 2 1 3 5 5 C 1.53003 * 109.47152 * 119.99844 * 2 1 3 6 6 C 1.50694 * 109.47139 * 185.00114 * 5 2 1 7 7 C 1.41171 * 126.24565 * 269.97325 * 6 5 2 8 8 C 1.34804 * 107.51051 * 180.02562 * 7 6 5 9 9 N 1.36852 * 108.18106 * 0.02562 * 8 7 6 10 10 C 1.37494 * 125.69089 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00457 * 160.64144 * 10 9 8 12 12 C 1.38923 * 120.00144 * 340.63685 * 10 9 8 13 13 N 1.31360 * 120.00254 * 349.71408 * 12 10 9 14 14 Si 1.86803 * 120.00155 * 169.71028 * 12 10 9 15 15 H 1.48499 * 109.46873 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47192 * 120.00132 * 14 12 10 17 17 H 1.48500 * 109.47138 * 240.00091 * 14 12 10 18 18 C 1.34800 * 126.24855 * 90.00436 * 6 5 2 19 19 H 1.09002 * 109.46830 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47217 * 299.99838 * 1 2 3 21 21 H 1.09001 * 109.47238 * 59.99886 * 1 2 3 22 22 H 1.00902 * 110.99784 * 296.04465 * 4 2 1 23 23 H 1.00893 * 110.99758 * 60.00017 * 4 2 1 24 24 H 1.09002 * 109.46712 * 64.99878 * 5 2 1 25 25 H 1.08998 * 109.47369 * 305.00565 * 5 2 1 26 26 H 1.07996 * 126.24690 * 0.02985 * 7 6 5 27 27 H 1.08003 * 125.91215 * 180.02562 * 8 7 6 28 28 H 0.96998 * 120.00212 * 179.97438 * 13 12 10 29 29 H 1.08000 * 125.90706 * 359.70970 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0400 -0.7212 1.2493 6 6 3.5419 -0.6149 1.3128 7 6 4.4673 -1.5219 0.7527 8 6 5.7040 -1.0648 1.0333 9 7 5.5783 0.0949 1.7490 10 6 6.6167 0.8627 2.2210 11 1 6.4456 1.8938 2.4932 12 6 7.8859 0.3123 2.3480 13 7 8.0565 -0.9832 2.2132 14 14 9.3500 1.4144 2.7102 15 1 8.8944 2.8238 2.8158 16 1 9.9767 0.9999 3.9911 17 1 10.3427 1.2955 1.6122 18 6 4.2469 0.3635 1.9152 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 1.7502 -1.6649 -1.1908 23 1 1.6961 -0.2350 -2.0385 24 1 1.7516 -1.7715 1.2056 25 1 1.6054 -0.2618 2.1370 26 1 4.2282 -2.4185 0.2001 27 1 6.6333 -1.5327 0.7435 28 1 8.9427 -1.3675 2.3014 29 1 3.8326 1.2144 2.4355 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085587411.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:03 Heat of formation + Delta-G solvation = 14.542739 kcal Electronic energy + Delta-G solvation = -11920.927163 eV Core-core repulsion = 9843.405434 eV Total energy + Delta-G solvation = -2077.521729 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.36653 -37.49033 -35.24644 -32.29648 -30.39944 -29.18414 -27.60474 -25.62845 -21.79712 -21.36532 -19.81715 -19.29510 -17.32520 -16.81677 -16.09412 -15.38533 -14.88213 -14.37003 -14.35903 -13.79497 -13.57115 -13.45898 -13.18205 -12.99041 -12.66907 -12.56898 -12.12899 -11.89852 -11.78474 -11.55379 -11.03516 -9.29570 -9.24439 -8.58034 -8.28174 -6.27348 1.32095 1.36798 1.53342 2.04540 2.18514 2.64467 3.10293 3.48714 3.88976 4.22893 4.37162 4.56418 4.71164 4.78363 4.92671 5.06756 5.13118 5.15293 5.20763 5.27172 5.47235 5.50799 5.83053 5.97829 6.21078 6.56364 6.67462 6.85737 6.93359 7.39045 7.80522 8.49437 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.080206 B = 0.008244 C = 0.007938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.016192 B = 3395.564272 C = 3526.637850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.099 3.901 3 H 0.056 0.944 4 N -0.846 5.846 5 C -0.023 4.023 6 C -0.172 4.172 7 C -0.236 4.236 8 C -0.040 4.040 9 N -0.280 5.280 10 C -0.384 4.384 11 H 0.106 0.894 12 C -0.003 4.003 13 N -0.881 5.881 14 Si 1.014 2.986 15 H -0.255 1.255 16 H -0.269 1.269 17 H -0.269 1.269 18 C -0.111 4.111 19 H 0.060 0.940 20 H 0.063 0.937 21 H 0.061 0.939 22 H 0.341 0.659 23 H 0.341 0.659 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.117 0.883 27 H 0.137 0.863 28 H 0.280 0.720 29 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.733 1.920 -2.894 9.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.013 4.013 3 H 0.074 0.926 4 N -0.377 5.377 5 C -0.062 4.062 6 C -0.179 4.179 7 C -0.261 4.261 8 C -0.177 4.177 9 N 0.061 4.939 10 C -0.511 4.511 11 H 0.124 0.876 12 C -0.208 4.208 13 N -0.514 5.514 14 Si 0.834 3.166 15 H -0.179 1.179 16 H -0.194 1.194 17 H -0.194 1.194 18 C -0.244 4.244 19 H 0.079 0.921 20 H 0.082 0.918 21 H 0.080 0.920 22 H 0.154 0.846 23 H 0.154 0.846 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.135 0.865 27 H 0.154 0.846 28 H 0.090 0.910 29 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.542 2.177 -2.465 8.228 hybrid contribution -0.089 0.037 -0.008 0.097 sum -7.631 2.214 -2.473 8.322 Atomic orbital electron populations 1.22564 0.96076 1.02321 1.02537 1.21307 0.92248 0.97273 0.90424 0.92613 1.58659 1.68463 1.06614 1.03923 1.19853 0.89659 0.99832 0.96806 1.19101 0.94980 0.97108 1.06697 1.20407 0.91796 1.02823 1.11070 1.21903 0.98676 0.92927 1.04207 1.40422 1.04588 1.16562 1.32312 1.20375 0.88497 0.96194 1.46069 0.87579 1.26592 1.02235 0.97511 0.94443 1.70072 1.25004 1.12111 1.44183 0.84596 0.75692 0.77984 0.78283 1.17866 1.19367 1.19379 1.21651 0.83544 1.04908 1.14339 0.92101 0.91768 0.92017 0.84611 0.84609 0.92033 0.91575 0.86459 0.84550 0.90953 0.84099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.73 9.48 71.98 0.68 -3.05 15 2 C 0.10 2.92 3.36 44.92 0.15 3.07 15 3 H 0.06 1.86 8.14 -2.39 -0.02 1.84 15 4 N -0.85 -24.64 8.94 -168.67 -1.51 -26.15 15 5 C -0.02 -0.80 5.33 29.85 0.16 -0.64 15 6 C -0.17 -7.97 5.13 -19.94 -0.10 -8.07 15 7 C -0.24 -12.02 10.79 22.20 0.24 -11.78 15 8 C -0.04 -2.29 10.05 83.12 0.84 -1.45 15 9 N -0.28 -16.17 2.91 -350.09 -1.02 -17.18 15 10 C -0.38 -21.89 10.08 83.97 0.85 -21.05 15 11 H 0.11 5.69 7.85 -2.91 -0.02 5.67 15 12 C 0.00 -0.17 5.37 84.93 0.46 0.29 15 13 N -0.88 -49.96 10.82 21.65 0.23 -49.73 15 14 Si 1.01 41.04 29.56 68.60 2.03 43.07 15 15 H -0.26 -9.79 7.11 99.48 0.71 -9.08 15 16 H -0.27 -10.44 7.11 99.48 0.71 -9.74 15 17 H -0.27 -10.53 7.11 99.48 0.71 -9.82 15 18 C -0.11 -5.69 11.28 83.12 0.94 -4.75 15 19 H 0.06 1.18 8.14 -2.39 -0.02 1.16 15 20 H 0.06 1.29 8.14 -2.39 -0.02 1.27 15 21 H 0.06 1.15 8.14 -2.39 -0.02 1.13 15 22 H 0.34 8.92 8.98 -89.69 -0.81 8.11 15 23 H 0.34 8.27 9.04 -89.70 -0.81 7.46 15 24 H 0.06 2.00 8.14 -2.39 -0.02 1.98 15 25 H 0.07 2.11 8.14 -2.39 -0.02 2.09 15 26 H 0.12 5.45 8.06 -2.91 -0.02 5.43 15 27 H 0.14 8.23 6.34 -2.91 -0.02 8.21 15 28 H 0.28 14.53 8.31 -92.71 -0.77 13.76 15 29 H 0.14 6.56 8.06 -2.91 -0.02 6.54 15 Total: -1.00 -64.89 249.90 3.47 -61.42 By element: Atomic # 1 Polarization: 36.49 SS G_CDS: -0.47 Total: 36.01 kcal Atomic # 6 Polarization: -51.65 SS G_CDS: 4.21 Total: -47.44 kcal Atomic # 7 Polarization: -90.76 SS G_CDS: -2.29 Total: -93.06 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -64.89 3.47 -61.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085587411.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.961 kcal (2) G-P(sol) polarization free energy of solvation -64.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds