Wall clock time and date at job start Mon Mar 30 2020 02:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47365 * 2 1 4 4 H 1.08999 * 109.47135 * 54.42400 * 3 2 1 5 5 C 1.50701 * 109.47106 * 174.42724 * 3 2 1 6 6 H 1.08003 * 120.00366 * 120.00114 * 5 3 2 7 7 C 1.37884 * 119.99919 * 300.27027 * 5 3 2 8 8 N 1.31507 * 119.99930 * 359.73283 * 7 5 3 9 9 Si 1.86805 * 119.99898 * 179.72559 * 7 5 3 10 10 H 1.48502 * 109.47195 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.46786 * 120.00376 * 9 7 5 12 12 H 1.48499 * 109.46891 * 240.00057 * 9 7 5 13 13 N 1.46904 * 109.47146 * 294.42507 * 3 2 1 14 14 N 1.36596 * 111.00037 * 156.23125 * 13 3 2 15 15 C 1.36346 * 125.63618 * 5.36529 * 14 13 3 16 16 C 1.34853 * 108.21465 * 179.83553 * 15 14 13 17 17 C 1.40885 * 107.41962 * 0.42635 * 16 15 14 18 18 C 1.34858 * 107.41765 * 359.73701 * 17 16 15 19 19 H 1.08998 * 109.46589 * 57.14597 * 1 2 3 20 20 H 1.08997 * 109.46962 * 177.14538 * 1 2 3 21 21 H 1.08997 * 109.46746 * 297.15178 * 1 2 3 22 22 H 1.09005 * 109.47502 * 239.99294 * 2 1 3 23 23 H 1.09003 * 109.46666 * 119.99924 * 2 1 3 24 24 H 0.97000 * 120.00040 * 179.97438 * 8 7 5 25 25 H 1.00901 * 110.99570 * 32.26991 * 13 3 2 26 26 H 1.07999 * 125.89168 * 359.96485 * 15 14 13 27 27 H 1.07995 * 126.28999 * 180.16654 * 16 15 14 28 28 H 1.07997 * 126.29578 * 179.73878 * 17 16 15 29 29 H 1.07998 * 125.88880 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5975 1.9843 0.8358 5 6 3.5407 1.4446 0.1380 6 1 4.1534 1.8866 -0.6339 7 6 4.1319 0.8774 1.2470 8 7 3.3859 0.3392 2.1868 9 14 5.9924 0.8732 1.4144 10 1 6.5974 1.5360 0.2311 11 1 6.3802 1.6082 2.6450 12 1 6.4785 -0.5273 1.5003 13 7 1.6633 2.0950 -1.2611 14 7 1.6151 3.4523 -1.1145 15 6 1.9751 4.1438 0.0040 16 6 1.7917 5.4581 -0.2357 17 6 1.2912 5.5819 -1.5469 18 6 1.1933 4.3388 -2.0606 19 1 -0.3632 0.5575 -0.8633 20 1 -0.3633 -1.0264 -0.0512 21 1 -0.3633 0.4690 0.9144 22 1 1.8934 -0.5140 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 3.8018 -0.0602 2.9669 25 1 0.7850 1.7369 -1.6052 26 1 2.3453 3.7134 0.9227 27 1 1.9880 6.2669 0.4525 28 1 1.0333 6.5029 -2.0485 29 1 0.8419 4.0888 -3.0507 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085830447.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:55 Heat of formation + Delta-G solvation = 74.222298 kcal Electronic energy + Delta-G solvation = -12311.742559 eV Core-core repulsion = 10236.808730 eV Total energy + Delta-G solvation = -2074.933829 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.55708 -36.21531 -32.89288 -31.52067 -28.47481 -27.61002 -26.09658 -23.09357 -20.75740 -19.77040 -18.54372 -17.62003 -16.45600 -15.09423 -14.51171 -13.75625 -13.53406 -13.01688 -12.72875 -12.53487 -12.07854 -11.63118 -11.40932 -11.24876 -10.98289 -10.73749 -10.18484 -10.11319 -9.98121 -9.70068 -8.87358 -8.51026 -7.43533 -7.10284 -6.17524 -4.22978 3.11595 3.23429 3.31833 3.37798 3.52796 3.72571 4.33016 5.12949 5.32242 5.89049 5.90623 5.92390 6.04078 6.16977 6.24275 6.52531 6.60864 6.69294 6.78005 6.94918 7.05824 7.24297 7.40570 7.61357 7.73580 7.87723 8.10693 8.29754 8.78577 8.97373 9.42852 10.88260 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.032040 B = 0.013864 C = 0.010683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.709974 B = 2019.119308 C = 2620.362706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.125 4.125 3 C 0.197 3.803 4 H 0.027 0.973 5 C -0.500 4.500 6 H 0.065 0.935 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.454 5.454 14 N -0.267 5.267 15 C 0.002 3.998 16 C -0.228 4.228 17 C -0.211 4.211 18 C -0.034 4.034 19 H 0.033 0.967 20 H 0.045 0.955 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.111 0.889 24 H 0.263 0.737 25 H 0.330 0.670 26 H 0.169 0.831 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.343 2.884 -3.591 6.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.164 4.164 3 C 0.091 3.909 4 H 0.045 0.955 5 C -0.539 4.539 6 H 0.084 0.916 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.729 3.271 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.177 5.177 14 N -0.025 5.025 15 C -0.133 4.133 16 C -0.253 4.253 17 C -0.238 4.238 18 C -0.167 4.167 19 H 0.052 0.948 20 H 0.064 0.936 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.129 0.871 24 H 0.073 0.927 25 H 0.151 0.849 26 H 0.186 0.814 27 H 0.146 0.854 28 H 0.145 0.855 29 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.676 2.374 -3.719 5.742 hybrid contribution 0.189 -0.168 0.583 0.635 sum -3.487 2.206 -3.136 5.182 Atomic orbital electron populations 1.21927 0.99130 1.00215 0.99942 1.21794 0.91585 0.98947 1.04122 1.19851 0.97183 0.90754 0.83102 0.95545 1.21078 0.89986 1.37490 1.05316 0.91635 1.24928 0.98774 0.95001 0.95453 1.69851 1.35050 1.38667 1.09642 0.86365 0.84821 0.77732 0.78168 1.19617 1.20887 1.20920 1.62716 1.33490 0.87366 1.34156 1.43412 1.46410 1.01398 1.11250 1.22076 1.07452 0.91435 0.92312 1.20632 1.11555 0.95107 0.97995 1.20597 1.10701 0.95767 0.96692 1.21477 1.11005 0.88572 0.95635 0.94797 0.93614 0.93432 0.93417 0.87112 0.92687 0.84901 0.81403 0.85437 0.85496 0.83015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.79 37.16 0.36 -2.45 15 2 C -0.13 -2.77 5.37 -26.73 -0.14 -2.92 15 3 C 0.20 4.72 1.62 -68.86 -0.11 4.61 15 4 H 0.03 0.70 6.36 -51.93 -0.33 0.37 15 5 C -0.50 -13.37 7.91 -34.44 -0.27 -13.64 15 6 H 0.07 1.86 7.81 -52.48 -0.41 1.45 15 7 C 0.06 1.60 5.29 -17.82 -0.09 1.50 15 8 N -0.89 -24.15 11.28 55.43 0.63 -23.53 15 9 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 15 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 13 N -0.45 -9.84 7.03 -5.65 -0.04 -9.88 15 14 N -0.27 -5.69 3.67 -12.85 -0.05 -5.74 15 15 C 0.00 0.05 9.68 -16.75 -0.16 -0.11 15 16 C -0.23 -4.41 10.86 -39.78 -0.43 -4.84 15 17 C -0.21 -3.80 10.86 -39.78 -0.43 -4.23 15 18 C -0.03 -0.63 11.67 -16.75 -0.20 -0.83 15 19 H 0.03 0.56 6.37 -51.93 -0.33 0.23 15 20 H 0.04 0.74 8.14 -51.93 -0.42 0.32 15 21 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 22 H 0.05 1.04 8.14 -51.93 -0.42 0.62 15 23 H 0.11 2.75 5.93 -51.93 -0.31 2.45 15 24 H 0.26 6.81 8.31 -40.82 -0.34 6.47 15 25 H 0.33 6.32 6.67 -181.37 -1.21 5.11 15 26 H 0.17 3.91 6.42 -52.49 -0.34 3.57 15 27 H 0.13 2.16 8.06 -52.49 -0.42 1.74 15 28 H 0.13 1.91 8.06 -52.49 -0.42 1.48 15 29 H 0.15 2.36 8.06 -52.49 -0.42 1.94 15 LS Contribution 242.35 15.07 3.65 3.65 Total: -1.00 -27.60 242.35 -6.91 -34.51 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -4.60 Total: 7.87 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: -1.48 Total: -22.91 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.54 Total: -39.15 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -27.60 -6.91 -34.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085830447.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.731 kcal (2) G-P(sol) polarization free energy of solvation -27.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds