Wall clock time and date at job start Mon Mar 30 2020 02:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47173 * 2 1 4 4 H 1.09001 * 109.47324 * 305.93036 * 3 2 1 5 5 C 1.50705 * 109.47312 * 185.92944 * 3 2 1 6 6 H 1.07994 * 119.99968 * 243.19144 * 5 3 2 7 7 C 1.37881 * 119.99785 * 63.19570 * 5 3 2 8 8 N 1.31510 * 119.99982 * 193.67468 * 7 5 3 9 9 Si 1.86797 * 119.99864 * 13.67196 * 7 5 3 10 10 H 1.48502 * 109.47344 * 91.17133 * 9 7 5 11 11 H 1.48500 * 109.47082 * 211.16810 * 9 7 5 12 12 H 1.48499 * 109.47536 * 331.16627 * 9 7 5 13 13 N 1.46907 * 109.47315 * 65.93119 * 3 2 1 14 14 N 1.36593 * 110.99907 * 269.25837 * 13 3 2 15 15 C 1.36350 * 125.63719 * 354.30306 * 14 13 3 16 16 C 1.34849 * 108.21678 * 180.02562 * 15 14 13 17 17 C 1.40887 * 107.41843 * 0.02562 * 16 15 14 18 18 C 1.34852 * 107.41895 * 359.97438 * 17 16 15 19 19 H 1.09002 * 109.46949 * 182.41632 * 1 2 3 20 20 H 1.08992 * 109.46842 * 302.41760 * 1 2 3 21 21 H 1.08996 * 109.46969 * 62.41833 * 1 2 3 22 22 H 1.09001 * 109.47710 * 240.00070 * 2 1 3 23 23 H 1.08998 * 109.47614 * 119.99892 * 2 1 3 24 24 H 0.96996 * 120.00021 * 180.02562 * 8 7 5 25 25 H 1.00896 * 110.99357 * 33.20694 * 13 3 2 26 26 H 1.08002 * 125.88574 * 0.03414 * 15 14 13 27 27 H 1.08005 * 126.28712 * 180.26784 * 16 15 14 28 28 H 1.08007 * 126.29050 * 179.97438 * 17 16 15 29 29 H 1.07994 * 125.88800 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5926 1.9861 -0.8321 5 6 3.5399 1.4451 -0.1468 6 1 4.1593 1.8388 0.6454 7 6 4.1213 0.9448 -1.2926 8 7 5.4123 0.6958 -1.3201 9 14 3.0751 0.6206 -2.8057 10 1 3.0630 1.8299 -3.6676 11 1 3.6432 -0.5224 -3.5647 12 1 1.6874 0.2964 -2.3881 13 7 1.6707 2.0925 1.2646 14 7 0.4573 2.7111 1.1609 15 6 -0.2776 2.8323 0.0188 16 6 -1.4097 3.5024 0.3152 17 6 -1.3721 3.8065 1.6903 18 6 -0.2187 3.3102 2.1821 19 1 -0.3633 -1.0268 0.0433 20 1 -0.3633 0.5509 0.8675 21 1 -0.3633 0.4758 -0.9108 22 1 1.8935 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 5.8214 0.3442 -2.1262 25 1 1.6752 1.4306 2.0261 26 1 -0.0008 2.4563 -0.9550 27 1 -2.2016 3.7556 -0.3742 28 1 -2.1281 4.3393 2.2481 29 1 0.1126 3.3765 3.2078 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085830449.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:58 Heat of formation + Delta-G solvation = 87.756169 kcal Electronic energy + Delta-G solvation = -12461.417891 eV Core-core repulsion = 10387.070935 eV Total energy + Delta-G solvation = -2074.346957 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.97456 -36.50475 -32.90566 -31.86893 -28.63021 -28.36829 -26.31192 -22.76177 -21.34473 -20.08449 -18.67599 -18.20169 -16.46613 -15.19922 -15.12247 -14.09104 -13.52522 -13.29483 -12.90287 -12.68791 -12.14565 -11.97731 -11.83584 -11.61556 -11.22608 -10.93710 -10.79285 -10.08680 -9.79432 -9.64063 -9.10493 -8.61140 -7.68764 -7.29638 -6.26578 -4.23927 2.84156 3.14642 3.21991 3.27115 3.28047 3.47258 4.24507 4.96355 5.04882 5.56512 5.65700 5.69819 5.82370 5.86891 5.92005 6.20562 6.31527 6.35244 6.45400 6.67955 6.69516 6.83217 6.93484 7.26739 7.43696 7.48059 7.88451 8.31222 8.70615 8.85401 9.34368 10.85809 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.050611 B = 0.012219 C = 0.011532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.107211 B = 2290.914191 C = 2427.526672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.160 4.160 3 C 0.172 3.828 4 H 0.051 0.949 5 C -0.512 4.512 6 H 0.085 0.915 7 C 0.080 3.920 8 N -0.885 5.885 9 Si 0.857 3.143 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.251 1.251 13 N -0.437 5.437 14 N -0.274 5.274 15 C -0.024 4.024 16 C -0.214 4.214 17 C -0.212 4.212 18 C -0.020 4.020 19 H 0.044 0.956 20 H 0.049 0.951 21 H 0.052 0.948 22 H 0.073 0.927 23 H 0.059 0.941 24 H 0.267 0.733 25 H 0.344 0.656 26 H 0.159 0.841 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.942 0.629 2.672 11.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.199 4.199 3 C 0.064 3.936 4 H 0.068 0.932 5 C -0.551 4.551 6 H 0.103 0.897 7 C -0.123 4.123 8 N -0.521 5.521 9 Si 0.684 3.316 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.175 1.175 13 N -0.158 5.158 14 N -0.031 5.031 15 C -0.158 4.158 16 C -0.240 4.240 17 C -0.238 4.238 18 C -0.153 4.153 19 H 0.063 0.937 20 H 0.068 0.932 21 H 0.071 0.929 22 H 0.091 0.909 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.165 0.835 26 H 0.176 0.824 27 H 0.147 0.853 28 H 0.148 0.852 29 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.045 0.935 2.476 10.388 hybrid contribution -0.784 -1.063 -0.908 1.603 sum -10.828 -0.127 1.568 10.942 Atomic orbital electron populations 1.22099 0.97633 1.00597 1.01390 1.22771 0.93564 1.00684 1.02865 1.20212 0.98296 0.88912 0.86227 0.93186 1.20613 0.87537 1.41904 1.04998 0.89736 1.24808 0.94869 0.94307 0.98356 1.69910 1.10773 1.42926 1.28528 0.87349 0.81992 0.78502 0.83794 1.20193 1.20922 1.17512 1.62703 1.06353 1.36538 1.10207 1.43674 1.12004 1.39212 1.08254 1.21877 0.93301 1.08460 0.92198 1.20634 0.98979 1.08098 0.96298 1.20642 0.98711 1.09105 0.95299 1.21564 0.94486 1.05923 0.93353 0.93737 0.93223 0.92940 0.90908 0.92191 0.92263 0.83472 0.82412 0.85269 0.85188 0.82559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 8.41 37.16 0.31 -2.50 15 2 C -0.16 -3.25 4.56 -26.73 -0.12 -3.37 15 3 C 0.17 3.85 1.67 -68.86 -0.11 3.74 15 4 H 0.05 1.16 4.29 -51.93 -0.22 0.94 15 5 C -0.51 -13.82 9.31 -34.44 -0.32 -14.15 15 6 H 0.08 2.52 8.06 -52.49 -0.42 2.10 15 7 C 0.08 2.21 5.35 -17.82 -0.10 2.12 15 8 N -0.88 -25.98 13.96 55.43 0.77 -25.21 15 9 Si 0.86 20.03 25.75 -169.99 -4.38 15.65 15 10 H -0.28 -6.51 7.11 56.52 0.40 -6.10 15 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 12 H -0.25 -5.40 5.31 56.52 0.30 -5.10 15 13 N -0.44 -8.95 6.82 -5.65 -0.04 -8.99 15 14 N -0.27 -5.18 2.67 -12.85 -0.03 -5.21 15 15 C -0.02 -0.45 7.66 -16.75 -0.13 -0.58 15 16 C -0.21 -3.57 10.86 -39.78 -0.43 -4.00 15 17 C -0.21 -3.35 10.86 -39.78 -0.43 -3.78 15 18 C -0.02 -0.33 11.67 -16.75 -0.20 -0.52 15 19 H 0.04 0.70 8.14 -51.93 -0.42 0.28 15 20 H 0.05 0.87 6.07 -51.93 -0.32 0.55 15 21 H 0.05 0.91 6.80 -51.93 -0.35 0.56 15 22 H 0.07 1.56 4.57 -51.93 -0.24 1.33 15 23 H 0.06 1.19 8.00 -51.93 -0.42 0.77 15 24 H 0.27 7.35 8.31 -40.82 -0.34 7.01 15 25 H 0.34 6.41 8.49 -181.37 -1.54 4.87 15 26 H 0.16 2.94 5.32 -52.49 -0.28 2.66 15 27 H 0.13 1.85 8.06 -52.48 -0.42 1.43 15 28 H 0.13 1.71 8.06 -52.48 -0.42 1.29 15 29 H 0.16 2.18 8.06 -52.49 -0.42 1.76 15 LS Contribution 231.28 15.07 3.49 3.49 Total: -1.00 -28.77 231.28 -6.43 -35.21 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -4.71 Total: 8.10 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: -1.53 Total: -23.04 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.70 Total: -39.41 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.38 Total: 15.65 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -28.77 -6.43 -35.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085830449.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.963 kcal (2) G-P(sol) polarization free energy of solvation -28.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds